Tag: DNAseq

This contract position provides the opportunity to implement and deliver bioinformatics tools for a wide range of applications working with proteomics. The candidate will join a team focused on infrastructure developments for proteomics and collaboration with many research groups in Genentech, working with both bioinformatics and bench biology teams. Responsibilities…

This is a Stanford Health Care job. A Brief Overview Senior Staff Scientist will be part of a growing clinical genomics team of bioinformaticians, lab scientists, data curation scientists, clinicians and medical fellows. The Clinical Genomics Program (CGP) is a collaboration between Stanford Hospitals and Stanford School of Medicine to…

Abstract Paired DNA-RNA sequencing analyses enhance diagnostic yield in rare disorders by revealing pathogenic splice mutations that cannot be identified using DNAseq based methods alone. However, such analyses are typically restricted to known disease gene panels and focus on causal variants close to intron-exon boundaries. Here, we developed SpliPath (Splicing…

DOI: 10.18129/B9.bioc.karyoploteR     This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see karyoploteR. Plot customizable linear genomes displaying arbitrary data Bioconductor version: 3.13 karyoploteR creates karyotype plots of arbitrary genomes and offers a complete set of functions to plot arbitrary data on them….

Sunrise System Inc. is currently looking for Bioinformatics Data Scientist in Lawrenceville, NJ with one of our top clients. Job Title: Bioinformatics Data ScientistJob Id: 23-04105Location: Lawrenceville, NJ 08648Duration: 12 monthsPosition Type: Hourly contract Position (W2 only) Note: 50%Onsite Job Description: Senior Research Scientist, Disease Strategy and Late Stage Hematology, Translational Bioinformatics 5+ years of…

Sunrise System Inc. is currently looking for Bioinformatics Scientist in Lawrenceville, NJ with one of our top clients. Job Title: Bioinformatics Scientist Job Id: 23-04105 Location: Lawrenceville, NJ 08648 Duration: 12 months Position Type: Hourly contract Position (W2 only) Note: 50%Onsite Job Description: Senior Research Scientist, Disease Strategy and Late…

TRANSLATIONAL BIOINFORMATICS RESEARCH SCIENTIST LAWRENCEVILLE, NJ 5+ years of bioinformatics data analysis experience in the Cancer Research setting or Biopharma space 50% onsite/50% remote Required Skills: Ph.D. Or M.Sc. With 3+ years of experience- in computational biology, bioinformatics, biostatistics, or another relevant field. Experience in cancer research institutions, biotech or…

DOI: 10.18129/B9.bioc.miaSim   This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see miaSim. Microbiome Data Simulation Bioconductor version: 3.16 Microbiome time series simulation with generalized Lotka-Volterra model, Self-Organized Instability (SOI), and other models. Hubbell’s Neutral model is used to determine the abundance matrix. The…

Bioinformatics Analyst Location: South San Francisco, California Type: Contract Job #39364 We are seeking a highly motivated Bioinformatics Analyst to work on the analysis and interpretation of high-throughput genomic and clinical data, to investigate immune cell crosstalk within the tumor microenvironment. This individual will be affiliated primarily with developing software to simulate…

News:Bioinformatics Pipeline Development with Nextflow (May 15-17 in Leipzig, Germany) 0 Streamline your research through the development of reproducible analysis pipelines In a nutshell Learn the fundamental best-practices of bioinformatic pipeline development Understand how workflow management systems can accelerate your research Use state-of-the-art, open source software to make complex analyses…

Tool Tool Name Description Removes adapter sequences and trims low quality bases from the 3′ end of reads. Overlapping paired-ended reads can be merged into consensus sequences and adapter sequence can be found for paired-ended data if not known. Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data….

1. Download of sequence data When we start to understand the processing flow of the sequence, we first need to know the sequence download URL. One of the well-known websites is NCBI (National Center for Biotechnology Information) US National Center for Biotechnology Information. 1. Enter NCBI through the following website,…

DOI: 10.18129/B9.bioc.samExploreR     This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information. This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see samExploreR. samExploreR…

This blog post was contributed by Don Freed, Senior Bioinformatics Scientist, and Brendan Gallagher, Head of Business Development at Sentieon; and Olivia Choudhury, PhD, Senior Partner Solutions Architect, Sujaya Srinivasan, Genomics Solutions Architect, and Aniket Deshpande, Senior Specialist, HPC HCLS at AWS. The year 2022 was an exciting one for genomics…

Director of Bioinformatics Research Location:  Remote Status:  Full-time ExemptReports to:  VP Bioinformatics & BiostatisticsDirect Reports:  Build and lead a team consisting of bioinformatics research scientists that support internal business development client engagements, as well as, external academic partner research projects and biopharma sponsored bioinformatics services Who we are M2GEN is…

DOI: 10.18129/B9.bioc.ALDEx2     This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ALDEx2. Analysis Of Differential Abundance Taking Sample Variation Into Account Bioconductor version: 3.9 A differential abundance analysis for the comparison of two or more conditions. Useful for analyzing data from standard…

DOI: 10.18129/B9.bioc.Clomial     This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see Clomial. Infers clonal composition of a tumor Bioconductor version: 3.12 Clomial fits binomial distributions to counts obtained from Next Gen Sequencing data of multiple samples of the same tumor. The trained…