Tag: dnasp

Novel equi merozoite antigen (ema-1) gene heterogeneity in a geographically isolated Theileria equi population in Croatia | Parasites & Vectors

Richter S. Vrste haemosporidia u konja i goveda NR Hrvatskoj. Thesis: Veterinary faculty university of zagreb; 1954. Google Scholar  Rothschild CM. Equine piroplasmosis. J Equine Vet Sci. 2013;33:497–508. Article  Google Scholar  Ueti MW, Palmer GH, Scoles GA, Kappmeyer LS, Knowles DP. Persistently infected horses are reservoirs for intrastadial tick-borne transmission…

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Remarkably low host specificity in the bat fly Penicillidia fulvida (Diptera: Nycteribiidae) as assessed by mitochondrial COI and nuclear 28S sequence data | Parasites & Vectors

Zachos FE. Species concepts in biology: historical development, theoretical foundations and practical relevance. Berlin: Springer; 2016. Google Scholar  Perkins SL. Species concepts and malaria parasites: detecting a cryptic species of Plasmodium. Proc Biol Sci. 2000;267:2345–50. CAS  PubMed  PubMed Central  Google Scholar  Mayr E. Systematics and the origin of species. New…

Continue Reading Remarkably low host specificity in the bat fly Penicillidia fulvida (Diptera: Nycteribiidae) as assessed by mitochondrial COI and nuclear 28S sequence data | Parasites & Vectors

Comparative chloroplast genome and phylogenetic analyses of Chinese Polyspora

Choo, L. M., Niissalo, M. A., Leong, P. K. F. & Khew, G. S. The complete plastome sequence of Gordonia penangensis Ridl. supports the transfer of Asian Gordonia into Polyspora (Theaceae). Phytotaxa 458, 159–166 (2020). Nguyet, H. N. L. et al. An updated checklist of Theaceae and a new species…

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Plastomes of limestone karst gesneriad genera Petrocodon and Primulina, and the comparative plastid phylogenomics of Gesneriaceae

Features of the newly sequenced Petrocodon and Primulina plastomes Sizes of the nine newly sequenced plastomes of Petrocodon and Primulina range from 152,323 bp in Pr. medica (D.Fang ex W.T.Wang) Yin Z.Wang to 153,786 bp in Pr. cordata Mich.Möller & A.Weber (Tables 1, S1). These nine plastomes display the typical quadripartite structure…

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Unveiling new perspective of phylogeography, genetic diversity, and population dynamics of Southeast Asian and Pacific chickens

Food and Agriculture Organization. The state of the world’s animal genetic resources for food and agriculture (Rome, 2007). Lawler, A. Dawn of the chicken revealed in Southeast Asia. Science 368, 1411 (2020). ADS  CAS  PubMed  Article  Google Scholar  Sykes, N. A social perspective on the introduction of exotic animals: the…

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Antiplatelet response to clopidogrel is associated with a haplotype in CYP2C19 gene in Pakistani patients

Amsterdam, E. A. et al. 2014 AHA/ACC guideline for the management of patients with non-ST-elevation acute coronary syndromes: Executive summary: A report of the American College of Cardiology/American Heart Association Task Force on Practice Guidelines. Circulation 130, 2354–2394 (2014). Google Scholar  Kernan, W. N. et al. Guidelines for the prevention…

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The Clam Cyclina sinensis (Gmelin) Phylogeography Study with 28S rRNA Gene and Potential of Nuclear rRNA Genes in Genetic Assessments of Molluscs

Avise, J. C., 2009. Phylogeography: Retrospect and prospect. Journal of Biogeography, 36: 3–15. Article  Google Scholar  Beheregaray, L. B., 2008. Twenty years of phylogeography: The state of the field and the challenges for the Southern Hemisphere. Molecular Ecology, 17: 3754–3774. Google Scholar  Clement, M., Posada, D., and Crandall, K. A.,…

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New insight into the taxonomic resolution of the genus Bythotrephes Leydig (Crustacea: Cladocera) based on molecular data from Central Europe

1. Therriault, T. W. et al. Taxonomic resolution of the genus Bythotrephes Leydig using molecular markers and re-evaluation of its global distribution. Divers. Distrib. 8, 67–84 (2002). Google Scholar  2. Karpowicz, M., Ejsmont-Karabin, J., Kozłowska, J., Feniova, I. & Dzialowski, A. R. Zooplankton community responses to oxygen stress. Water 12,…

Continue Reading New insight into the taxonomic resolution of the genus Bythotrephes Leydig (Crustacea: Cladocera) based on molecular data from Central Europe

Two divergent haplogroups of a sacsin-like gene in Acropora corals

Verification of coding sequence (CDS) of a sacsin-like gene The genomic assembly version 2.01 of A. millepora13 was downloaded from the web site (przeworskilab.com/acropora-millepora-genome/). RNA-seq reads of one A. millepora (accession: SRR2086157) were mapped (similarity fraction > 0.8, length fraction > 0.9) to the genome assembly using CLC Genomics Workbench (www.qiagenbioinformatics.com/). Mapping results were…

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The mtDNA Control Region Variability of Microtus rossiaemeridionalis (Rodentia, Arvicolini) from Two Invasive Populations of the Russian Far East

1 Hobbs, R.J., Arico, S., Aronson, J., et al., Novel ecosystems: theoretical and management aspects of the new ecological world order, Global Ecol. Biogeography, 2006, vol. 15, pp. 1–7. doi.org/10.1111/j.1466-822x.2006.00212.x Article  Google Scholar  2 Bellard, C., Cassey, P., and Blackburn, T.M., Alien species as a driver of recent extinctions, Biol….

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Drug resistance mutations & genetic diversity of HIV1 in ART

Introduction At the end of 2018, 19.5 million people living with HIV were accessing ART globally.1 However, virological failure and development of drug resistance are becoming a bottleneck for the success of ART program. A global study involving 36 countries and 1926 patients with treatment failure from 1998–2015 reported that…

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Organelle DNA sequence data provide new insights into the maternal and paternal lineages of Musa species germplasms

Argent GCG (1976) The wild bananas of Papua new Guinea. Notes Roy Bot Gard Edinb 35:77–114 Google Scholar  Baker JG (1893) A synopsis of the genera and species of Musaceae. Ann Bot 7:189–229. doi.org/10.1093/aob/os-7.2.189 Article  Google Scholar  Barrett CF, Specht CD, Leebens-Mack J, Stevenson DW, Zomlefer WB, Davis JI (2014)…

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Following the Trace of HVS II Mitochondrial Region Within the Nine Iranian Ethnic Groups Based on Genetic Population Analysis

Akbari MT, Izadi P, Izadyar M, Kyriacou K, Kleanthous M (2008) Molecular basis of thalassemia intermedia in Iran. Hemoglobin 32:462–470 CAS  Article  Google Scholar  Al-Allawi NA, Jubrael JM, Hughson M (2006) Molecular characterization of β-thalassemia in the Dohuk region of Iraq. Hemoglobin 30:479–486 CAS  Article  Google Scholar  Alibakhshi R, Kianishirazi…

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Haplotype Diversity of Mongolian and Tuvan Goat Breeds (Capra hircus) Based on mtDNA and Y-Chromosome Polymorphism

1 Zonaed Siddiki, A., Miah, G., Islam, M.S., et al., Goat genomic resources: the search for genes associated with its economic traits, Int. J. Genomics, 2020, 5940205. doi.org/10.1155/2020/5940205 2 Amills, M., Capote, J., and Tosser-Klopp, G., Goat domestication and breeding: a jigsaw of historical, biological and molecular data with missing…

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Cenozoic climatic changes drive evolution and dispersal of coastal benthic foraminifera in the Southern Ocean

1. Thomson, M. R. A. Geological and palaeoenvironmental history of the Scotia Sea region as a basis for biological interpretation. Deep Sea Res. II 51, 1467–1487 (2004). Article  ADS  Google Scholar  2. Maldonado, A. et al. A model of oceanic development by ridge jumping: Opening of the Scotia Sea. Glob….

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Connectivity, diversity, and hybridization between two endemic fish species (Percilia spp.) in a complex temperate landscape

Anderson EC, Thompson EA (2002) A model-based method for identifying species hybrids using multilocus genetic data. Genetics 160:1217–1229. doi.org/10.1175/1520-0442(1992)0052.0.CO;2 CAS  Article  PubMed  PubMed Central  Google Scholar  Arratia G (1982) A Review of freshwater percoids from South America (Pisces, Osteichthyes, Perciformes, Percichthyidae, and Peciliidae). Abh Senckenb Naturforsch Ges 15:1–52 Google Scholar …

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Dnasp Tutorial For Beginner

Dnasp Tutorial For Beginner 1 Hi Can someone help me? I need to know which data is required to perform different test with DNAsp: intra or interspecies sequences thank you • 6.1k views The “sp” in DNAsp stands for “sequence polymorphism” which reflects that this software is principally designed for…

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