Tag: docker

What’s New in IntelliJ IDEA Ultimate 2023.3

Releases The Ultimate edition of IntelliJ IDEA goes beyond the basics, offering a comprehensive suite of features, including in-depth profiling capabilities, database tools, built-in support for many web and enterprise frameworks, and more. In this latest v2023.3 release, we’ve rolled out a suite of new features to enhance your coding…

Continue Reading What’s New in IntelliJ IDEA Ultimate 2023.3

Topic Modelling with LDA: A Comprehensive Guide for Students

2/8/24, 5:59 PMtopic-modelling-lda.ipynb – Colaboratory 1/5# This Python 3 environment comes with many helpful analytics libraries installed # It is defined by the kaggle/python Docker image: # For example, here’s several helpful packages to load import numpy as np # linear algebra import pandas as pd # data processing, CSV…

Continue Reading Topic Modelling with LDA: A Comprehensive Guide for Students

Vertex AI docker in docker: Cannot connect to the Docker daemon

So I am using kubeflow Containerized Python Components to create a Vertex AI training pipeline. As the last step of the pipeline, I would like to build and push a custom prediction container using a Custom Prediction Routine, with the newly trained model baked in. In the Dockerfile that creates…

Continue Reading Vertex AI docker in docker: Cannot connect to the Docker daemon

Amplifybio, LLC Sr./Scientist, Bioinformatics in South San Francisco, CA | 892968472

Are you passionate about significantly improving the future of medicine? Do you believe that people are the most important asset of any company? If so, join AmplifyBio! AmplifyBio is a company dedicated to building an integrated environment where clients can access technologies, platforms, capabilities and safety testing for the scale…

Continue Reading Amplifybio, LLC Sr./Scientist, Bioinformatics in South San Francisco, CA | 892968472

Top 20 Hadoop Competitors and Alternatives

Hadoop is an open-source big data analytics platform headquartered in Baltimore, Maryland. The solution evolved from the Google File System paper published by Doug Cutting and Mike Cafarella in October 2003 as part of the Apache Nutch project. The co-founders moved the platform to the Hadoop subproject in 2006. In…

Continue Reading Top 20 Hadoop Competitors and Alternatives

Software Developer (m/w/d), Austria – SaluteMyJob

EMBO is a not-for-profit organization that promotes excellence in life sciences in Europe and beyond. We fund talented researchers at all stages of their careers, stimulate scientific exchanges through high-quality academic publishing, conferences and lectures, and help build a research environment where scientists can achieve their best work. Our international…

Continue Reading Software Developer (m/w/d), Austria – SaluteMyJob

Getting 401 in openapi scan for authenticated APIs.

Hi all I am trying to perform scan on an openapi definition file (api-qa-clone.json) .Some APIs in this definition file are open and some require token in ‘Authorization’ request header. To achieve this I am using below multi-stage Dockerfile: FROM python AS pybuildWORKDIR /tmpCOPY zap_api_automation.py .COPY options.prop .COPY api-qa-clone.json .RUN…

Continue Reading Getting 401 in openapi scan for authenticated APIs.

How To Build AI App from Scratch

Learn how to create your own AI app from scratch using the latest technologies and tools In the rapidly evolving landscape of technology, artificial intelligence (AI) has emerged as a transformative force, influencing various industries. Building an AI app from scratch might seem daunting, but with the right approach and…

Continue Reading How To Build AI App from Scratch

Sr. Software Engineer in Test (Bioinformatics or Data Sciences) / SDET – Key Infotek LLC

Job Title: Sr. Software Engineer in Test (Bioinformatics or Data Sciences) Location: Mississauga, CAD Pay Rate: DOE   Requirements: B.S. or M.S. in Computer Science, Data Sciences, Bioinformatics, Biomedical engineering or equivalent field 5+ years of experience in software development or software test engineering or data engineering Proficiency in Python,…

Continue Reading Sr. Software Engineer in Test (Bioinformatics or Data Sciences) / SDET – Key Infotek LLC

Diving into PyTorch: A Beginner’s Tale of Contribution | by Weinheimergracia | Dec, 2023

Hey there, fellow code wranglers and AI enthusiasts! I’m Cami, your friendly neighborhood tech explorer, and I’m about to take you on a wild ride through my latest adventure: contributing to PyTorch without being an expert in it. Yes, you read that right! My Unexpected Journey into PyTorch So, I…

Continue Reading Diving into PyTorch: A Beginner’s Tale of Contribution | by Weinheimergracia | Dec, 2023

Vimerse InfoTech Inc hiring Sr. Software Engineer (Bioinformatics) in Mississauga, Ontario, Canada

Job Title: Sr. Software Engineer in Test (Bioinformatics or Data Sciences) Location: Mississauga, CAD Impact Healthcare Roche Sequencing is not only changing science, but we are changing lives. Our software teams are laying the groundwork for the future by developing powerful bioinformatics algorithms, data analysis tools, and software/systems infrastructures so…

Continue Reading Vimerse InfoTech Inc hiring Sr. Software Engineer (Bioinformatics) in Mississauga, Ontario, Canada

Drupal CMS Back End Developer at Accenture

Job description Accenture Interactive is one of the most innovative and fastest growing [Email Address Removed]ining the feel of a start-up and the advantages of being a global player, Accenture Interactive truly has a diverse and multi-talented team. We are now strengthening our highly skilled team and are looking for…

Continue Reading Drupal CMS Back End Developer at Accenture

KeyInfo hiring SDET must have (Bioinformatics or Data Sciences) in Canada

Job Title: Sr. Software Engineer in Test (Bioinformatics or Data Sciences) Remote Description: Responsibilities: •         Implement and maintain an end-to-end automation test framework for running UI integration tests and quality dashboards using various tools: Java, JavaScript/TypeScript, Cypress, Selenium WebDriver, Cucumber, TestNG, Junit •         Design and develop requirements based test cases •         Implement automated…

Continue Reading KeyInfo hiring SDET must have (Bioinformatics or Data Sciences) in Canada

NVIDIA GPU Optimized AMI is missing drivers and can’t run the PyTorch NGC Dockerfile – Amazon Web Services (AWS)

jaan1 December 18, 2023, 6:04pm 1 This AMI (AWS Marketplace: NVIDIA GPU-Optimized AMI – ami ID “ami-041855406987a648b”) should be preconfigured to run NVIDIA GPU Cloud (NGC) containers such as the PyTorch one. However it fails on launch on AWS (on a p3.2xlarge instance). After sshing in, I see this error…

Continue Reading NVIDIA GPU Optimized AMI is missing drivers and can’t run the PyTorch NGC Dockerfile – Amazon Web Services (AWS)

Accessing Snowflake with R Studio via ODBC on SPCS | by Gabriel Mullen | Snowflake | Dec, 2023

In a previous post, I was able to deploy a R Studio container into Snowpark Container Service. This allows me to run R code directly in Snowflake, but I still need to connect to Snowflake to grab data. So when I attempted to use the dbConnect syntax from the original…

Continue Reading Accessing Snowflake with R Studio via ODBC on SPCS | by Gabriel Mullen | Snowflake | Dec, 2023

How to entry user-selectable page with Dockerlized Jupyterhub – JupyterHub

I am currently building JupyterHub on single machine using Docker, and I want users to access a page where they can select the Docker image they want upon logging in, like the below page. But whenever I log in using any account, the system always redirects me to the JupyterLab…

Continue Reading How to entry user-selectable page with Dockerlized Jupyterhub – JupyterHub

jupyterhub/jupyterhub image fails (`alembic.ini` missing) by default

I’m not sure what the intented behavior of the jupyterhub/jupyterhub image is, but currently it fails to startup by default without additional mounted configuration files etc via a docker run docker.io/jupyterhub/jupyterhub:main command. docker run docker.io/jupyterhub/jupyterhub:main [I 2023-10-02 10:16:39.360 JupyterHub app:3076] Running JupyterHub version 5.0.0.dev [I 2023-10-02 10:16:39.360 JupyterHub app:3106] Using…

Continue Reading jupyterhub/jupyterhub image fails (`alembic.ini` missing) by default

First report of cutaneous leishmaniasis caused by Leishmania donovani in Ethiopia | Parasites & Vectors

Alvar J, Vélez ID, Bern C, Herrero M, Desjeux P, Cano J, et al. Leishmaniasis worldwide and global estimates of its incidence. PLoS ONE. 2012. doi.org/10.1371/journal.pone.0035671. Article  PubMed  PubMed Central  Google Scholar  Gadisa E, Tsegaw T, Abera A, Elnaiem DE, Den Boer M, Aseffa A, et al. Eco-epidemiology of visceral…

Continue Reading First report of cutaneous leishmaniasis caused by Leishmania donovani in Ethiopia | Parasites & Vectors

Diversity and dissemination of viruses in pathogenic protozoa

Wang, A. L. & Wang, C. C. Viruses of the protozoa. Annu. Rev. Microbiol. 45, 251–263 (1991). Article  CAS  PubMed  Google Scholar  Banik, G., Stark, D., Rashid, H. & Ellis, J. Recent advances in molecular biology of parasitic viruses. Infect. Disord. – Drug Targets 14, 155–167 (2015). Article  Google Scholar …

Continue Reading Diversity and dissemination of viruses in pathogenic protozoa

Senior Bioinformatics Engineer / Software Developer| Science, Engineering & Life Science Recruitment, Jobs & Staffing | SRG

A Bioinformatics Engineer is required to join a small but rapidly expanding company – by joining early in the journey you will gain exposure to the various facets of start-up life and have a unique chance to contribute to the technology and influence company culture. As the company expands this…

Continue Reading Senior Bioinformatics Engineer / Software Developer| Science, Engineering & Life Science Recruitment, Jobs & Staffing | SRG

Running RStudio in Snowpark Container Services | by Gabriel Mullen | Dec, 2023

I ran across this article on Running R in Snowpark Container Services. It’s great! But when I tried to duplicate it, aside from not having a Posit Workspace Key, I had some issues with the details. So I wanted to just document the steps that I took to get RStudio…

Continue Reading Running RStudio in Snowpark Container Services | by Gabriel Mullen | Dec, 2023

Senior R Studio Administrator – Remote – EPAM Systems

If you are looking for a high-impact Senior R Studio Administrator with a global leader in digital transformation, EPAM is the perfect next step in your career! As an EPAMer, you’ll have the opportunity to work with a supportive team, on a variety of interesting projects for some of the…

Continue Reading Senior R Studio Administrator – Remote – EPAM Systems

Docker Hub for Jupyter/PyTorch is missing – JupyterLab

Hi Everyone. Kindly help me to refer where to pull docker image for Jupyter/PyTorch-Notebook for the tag first semester of 2023 and goes backward to Year 2022. As I unable to found the relevant link on Docker Hub Jupyter I need it in order to setup my past projects along…

Continue Reading Docker Hub for Jupyter/PyTorch is missing – JupyterLab

Significant Slowdown in Training Speed After Using compile() in PyTorch 2.1.0 – torch.compile

Hello everyone, I’m currently experiencing a substantial decrease in training speed after using the compile() function in my PyTorch model. Before the inclusion of compile(), my training iterations were completed in approximately 1 second per iteration. However, after integrating compile(), the speed has drastically reduced to about 70 seconds per…

Continue Reading Significant Slowdown in Training Speed After Using compile() in PyTorch 2.1.0 – torch.compile

Loading R Packages In RStudio: A Step-By-Step Approach

Article Summary Box Preparing RStudio for package management is pivotal, involving setting up workspace directories and ensuring R version compatibility for optimal package functionality. In Understanding Package Libraries, the intricacies of library paths and package storage locations reveal strategies for streamlined package accessibility and organization. Advanced Techniques for Package Loading…

Continue Reading Loading R Packages In RStudio: A Step-By-Step Approach

Bioinformatics Analyst at Volta Labs, Inc.

Volta Labs is an MIT spin-off that has unlocked powerful new DNA sequencing capabilities by developing novel fluidic technology. Building off of this core technology, Volta has created a product that streamlines DNA sequencing sample prep. Volta is at the forefront of a sequencing revolution, driving sequencing towards seamless ease…

Continue Reading Bioinformatics Analyst at Volta Labs, Inc.

SRA Staffing – SRA Group hiring QA Analyst with Bioinformatics in Mississauga, Ontario, Canada

Title: QA Analyst with Bioinformatics Work location: Mississauga, Canada (Hybrid) Duration: 1 Year Plus Contract Job Description: B.S. or M.S. in Computer Science, Data Sciences, Bioinformatics, Biomedical engineering or equivalent field • Min 5 years of experience in software development or software test engineering or data engineering • Proficiency in…

Continue Reading SRA Staffing – SRA Group hiring QA Analyst with Bioinformatics in Mississauga, Ontario, Canada

What Is Mistral AI? – Open AI Master

Mistral AI has officially announced the Mistral 7B and Mistral 7B Instruct Foundation models based on the transformer model, which offer low latency and can handle long sequences. They can take 8000 tokens to generate content, making them one of the best-performing foundation models. They deliver capabilities similar to those…

Continue Reading What Is Mistral AI? – Open AI Master

Small-scale mutations are infrequent as mechanisms of resistance in post-PARP inhibitor tumour samples in high grade serous ovarian cancer

Peter MacCallum Cancer Centre, Melbourne, VIC, 3000, Australia Nikki L. Burdett, Madelynne O. Willis, Ahwan Pandey, Sian Fereday, D. Bowtell, N. Traficante, S. Fereday, L. Bowes, L. Galletta, D. Giles, J. Hendley, K. Alsop, L. Mileshkin, G. Au-Yeung, K. Phillips, D. Rischin, S. Fox, D. Johnson, S. Lade, M. Loughrey, N. O’Callaghan, W. Murray, David D. L. Bowtell & Elizabeth L. Christie Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria, 3010,…

Continue Reading Small-scale mutations are infrequent as mechanisms of resistance in post-PARP inhibitor tumour samples in high grade serous ovarian cancer

JupyterHub + SingleUserServer in API only mode – JupyterHub

Hi, My goal is to run both JupyterHub and the SingleUser servers in API only mode. I have not been able to do so for either and any guidance would be greatly appreciated. Does anyone have any tips on what I could do to put JupyterHub and SingleUser server in…

Continue Reading JupyterHub + SingleUserServer in API only mode – JupyterHub

yatendra jha | Analytics Vidhya

Participated in DataHour: Deep Dive into Kubernetes and Concepts of Containerization Participated in DataHour: Basics of Big Data File Formats Participated in DataHour: Google Cloud Vertex AI Platform Participated in DataHour: Apache Airflow – An Open Source Workflow Manager Participated in DataHour: Data Availability Through Data Lake in Large Organization…

Continue Reading yatendra jha | Analytics Vidhya

How to push PaaS usage beyond 12-factor apps

Sylvain Kalache Contributor Sylvain Kalache is the co-founder of Holberton, an edtech company training digital talent in more than 10 countries. An entrepreneur and software engineer, he has worked in the tech industry for more than a decade. Part of the team that led SlideShare to be acquired by LinkedIn,…

Continue Reading How to push PaaS usage beyond 12-factor apps

Problem with DockerSpawner volumes – JupyterHub

Hi Guys!Nice to meet you all here.I have a problem with permissions for user volumes.They are being created with root:root ownership and user does not have permission to write there.def create_dir_hook(spawner):username = spawner.user.name # get the usernamevolume_path = os.path.join(‘/volumes/jupyterhub/’, username)print(f”Checking if {volume_path} exists…”) if not os.path.exists(volume_path): print(f”{volume_path} does not exist….

Continue Reading Problem with DockerSpawner volumes – JupyterHub

Testing a PyTorch machine learning model with pytest

This tutorial covers: PyTorch is an open-source machine learning (ML) framework that accelerates the path from research prototyping to production deployment. You can work with PyTorch using regular Python without delving into the underlying native C++ code. It contains a full toolkit for building production-worthy ML applications, including layers for…

Continue Reading Testing a PyTorch machine learning model with pytest

python – Pytorch unexpected behaviour after fork

I have an application with PyTorch and Gunicorn. Firstly, I build models(torch Modules) in the Gunicorn Master Worker, and then Gunicorn forks the process, creates workers and serves requests. All the calculations are done on the CPU. The new feature is parallel computation per request, so I fork the Gunicorn…

Continue Reading python – Pytorch unexpected behaviour after fork

Revolutionizing Machine Learning with Large Model Training on AWS & PyTorch

🌐 Large models are reshaping our digital and physical existence, revolutionizing technology and solving more interesting use cases. 🛡️ AWS takes security seriously, scanning daily for vulnerabilities and patching critical issues regularly to ensure the lowest possible TCU for running distributed training jobs. 💡 Model training for recommendation use cases…

Continue Reading Revolutionizing Machine Learning with Large Model Training on AWS & PyTorch

Cannot connect to the server, what am I missing? – JupyterHub

The hub on the host severed directly on my machine (not via docker image). I run the jupyterhub with command arg –debug, and got the terminal infomation as follows: root@DESKTOP-L60P4Q8:~/my_docker/main# jupyterhub –debug -f ../jupyterhub_config.py [D 2023-12-07 23:00:23.417 JupyterHub application:908] Looking for ../jupyterhub_config in /root/my_docker/main [D 2023-12-07 23:00:23.417 JupyterHub application:929] Loaded…

Continue Reading Cannot connect to the server, what am I missing? – JupyterHub

ServerApp.iopub_data_rate_limit – Zero to JupyterHub on Kubernetes

escader December 6, 2023, 12:43pm 1 Hello. I deployed jupyterhub using helm chart v.2.0.0 and jupyterhub version 3.4.6. I get an error when doing a task. !!! I tried to set the jupyter notebook parameter –NotebookApp.iopub_data_rate_limit=100000000 when building docker, but I get ‘iopub_data_rate_limit’ has moved from NotebookApp to ServerApp. I…

Continue Reading ServerApp.iopub_data_rate_limit – Zero to JupyterHub on Kubernetes

r – How do I run(and access) multiple instances of RStudio Server using Docker?

I have an image that I’ve built that is built from the rocker team’s tidyverse docker image, which has multiple tools installed within the container. This container was built for use by multiple people. Two people are attempting to launch this image one after the other. These are the docker…

Continue Reading r – How do I run(and access) multiple instances of RStudio Server using Docker?

Sr. Scientist of Computational Biology/Bioinformatics at Flagship Pioneering, Inc. – Cambridge, MA USA

Company Summary: Each day, the lives of more than 2 billion people across the globe are impacted by chronic diseases. Moreover, the economic burden on society of treating chronic disease is spinning out of control. Today, this dire situation appears unlikely to change as >95% of global healthcare costs are…

Continue Reading Sr. Scientist of Computational Biology/Bioinformatics at Flagship Pioneering, Inc. – Cambridge, MA USA

Django-Ninja Unleashed: Crafting Stellar APIs | by StartxLabs Technologies | Dec, 2023

Django-Ninja Unleashed: Crafting Stellar APIs In the dynamic realm of web development, the quest for the perfect framework to build robust and efficient REST APIs has led developers to explore alternatives beyond the traditional. Enter Django-Ninja, a Python web framework tailored specifically for crafting RESTful APIs. In this comprehensive guide,…

Continue Reading Django-Ninja Unleashed: Crafting Stellar APIs | by StartxLabs Technologies | Dec, 2023

Issues with setting up z2jh with nbgrader – JupyterHub

Hello,I’m trying to deploy z2jh with nbgrader. here is the information about courses courses_data = [ { “name”:”course101″, “instructors”: [“instructor1”], “grader”: “grader-course101”, “docker_image_instructors”: “path/to/image”, “students”: [“student1”], “docker_image_students”: “path/to/image” }, { “name”: “course123”, “instructors”: [“instructor2”], “grader”: “grader-course123”, “students”: [“student1”], “docker_image_instructors”: “path/to/image”, “docker_image_students”: “path/to/image” } ] For each course I have a…

Continue Reading Issues with setting up z2jh with nbgrader – JupyterHub

Top 7 Generative AI Jobs in India

A year ago, OpenAI introduced its generative AI chatbot as a research prototype, and unexpectedly, it became highly sought after in 2023. The demand for generative AI is evident in the doubling of global job postings mentioning AI or generative AI on LinkedIn from July 2021 to July 2023. This…

Continue Reading Top 7 Generative AI Jobs in India

Panic: Could not run ‘torchvision::roi_pool’ with arguments from the ‘CUDA’ backend – Jetson Nano

Hi, Team! I have such errors, when I run my code in docker container: root@de87551d73cf:/app/src# ./main WARN[0032] CUDA is valid WARN[0044] CUDA is valid INFO[0044] Forwarding… [W TensorImpl.h:1156] Warning: Named tensors and all their associated APIs are an experimental feature and subject to change. Please do not use them for…

Continue Reading Panic: Could not run ‘torchvision::roi_pool’ with arguments from the ‘CUDA’ backend – Jetson Nano

BentoML vs RayServe: a comparative analysis

As a seasoned enthusiast and practitioner of machine learning, I have delved into the complexities of model serving platforms, investigating their advantages and disadvantages as well as the overall value propositions that they offer. Throughout this journey, two names have emerged as frontrunners: BentoML vs RayServe. Developers and data scientists…

Continue Reading BentoML vs RayServe: a comparative analysis

Bioinformatics Machine Learning Engineer – Biomedial Diagnostics – German Language Skills job with Umbilical Life

I am currently working with several clients across EU looking for Biomedical Data Scientists / ML Engineers for applications in R&D. My client based in Munich are searching for ML engineers for applications in Bioinformatics & Diagnostics.  German Language skills are essential for this client (B2 and above). Responsibilities  …

Continue Reading Bioinformatics Machine Learning Engineer – Biomedial Diagnostics – German Language Skills job with Umbilical Life

AI Scientist Job in Intangles at Other Maharashtra,Pune -Job Description #13551199

AI Scientist Job in Intangles at Other Maharashtra,Pune -Job Description #13551199 – Shine.com Hi Job Details Brief Description of position: Machine Learning and Deep Learning has many potential applications in the automotive domain such as advanced driving assistance systems (ADAS), autonomous driving, driver behaviour, vehicle health, and during development, manufacturing,…

Continue Reading AI Scientist Job in Intangles at Other Maharashtra,Pune -Job Description #13551199

Azure Docker image build cache past attempts?

Closed. This question is seeking recommendations for books, tools, software libraries, and more. It does not meet Stack Overflow guidelines. It is not currently accepting answers. We don’t allow questions seeking recommendations for books, tools, software libraries, and more. You can edit the question so it can be answered with…

Continue Reading Azure Docker image build cache past attempts?

Artificial Intelligence Developer Job in SquareShift at Chennai,Other Tamil Nadu -Job Description #13524939

Artificial Intelligence Developer Job in SquareShift at Chennai,Other Tamil Nadu -Job Description #13524939 – Shine.com Hi Job Details The AI Developer or Machine Learning Engineer is responsible for designing, developing, and deploying machine learning models and AI solutions using Python, long-chain and Google Vertex AI. The primary focus is on…

Continue Reading Artificial Intelligence Developer Job in SquareShift at Chennai,Other Tamil Nadu -Job Description #13524939

r – Copying host libraries in the image build from my Dockerfile

Is it possible to copy a local .Rprofile file from the host, during the building of the image with a Dockerfile ? I would like to copy this .Rprofile file in the following directory : /home/rstudio I had my Dockerfile as follow : FROM rocker/rstudio:4.2.0 as builder ARG bioc_ver=3.16 RUN…

Continue Reading r – Copying host libraries in the image build from my Dockerfile

Kaggle vs Paperspace – Finding the Optimal Platform for Data Science and Machine Learning

In this ever evolving field of A.I., Data Science, and Machine Learning, the choice of platform plays a crucial role in determining the best path to take on any real world problem. In this era with so many options, both Kaggle and Paperspace have become prominent spaces for providing necessary…

Continue Reading Kaggle vs Paperspace – Finding the Optimal Platform for Data Science and Machine Learning

Exporting your Vertex AI app to Android Studio for Jetpack UI design

Exporting your Vertex AI app to Android Studio for Jetpack UI design involves several steps: Create a Vertex AI App: Begin by creating a Vertex AI app that incorporates the search and conversation functionalities using the Vertex AI console or SDKs. Ensure your app is well-structured and organized for easy…

Continue Reading Exporting your Vertex AI app to Android Studio for Jetpack UI design

Generate client from CDF openapi spec for Go

I am unable to generate client code for the CDF openapi spec at api-docs.cognite.com/20230101/ using deepmap/oapi-codegen for Go, seemingly because the spec contains some errors. Do anyone know of a way to generate an api-client in go for the CDF-api spec?   Both commands below rely on having openapi spec…

Continue Reading Generate client from CDF openapi spec for Go

Can I start a JupyterHub server for multiple users without using Docker? – JupyterHub

I’m new to JupyterHub and Docker, and I’ve read the document carefully, but I still have no idea how to start a server.It seems that to create a server for multiple users you have to use Docker image. My goal is simple: let the user use the notebook just like…

Continue Reading Can I start a JupyterHub server for multiple users without using Docker? – JupyterHub

20 Best Neural Network Software for 2024

Image: Siarhei/Adobe Stock eWEEK content and product recommendations are editorially independent. We may make money when you click on links to our partners. Learn More. Neural network software enables the implementation, deployment and training of artificial neural networks. These networks are designed to mimic the behavior of the human brain…

Continue Reading 20 Best Neural Network Software for 2024

Unlock the Power of Vertex AI for End-to-End Solutions

Unlock the Power of Vertex AI for End-to-End Solutions Introduction What is Vertex AI? Overview of Vertex AI products Streamlining model development with Vertex AI Data gathering with managed datasets Training methods: AutoML and Custom Training Deploying models with Vertex AI Introduction to MLOps Vertex Feature Store for centralized feature…

Continue Reading Unlock the Power of Vertex AI for End-to-End Solutions

R script in docker

R script in docker 0 Hello, I am new in docker and try to run this tutorial: www.r-bloggers.com/2019/02/running-your-r-script-in-docker/ Through this tutorial, I try to run R script insider the container through the visual studio code. In the first part of tutorial when using the docker file that run the R…

Continue Reading R script in docker

Senior Bioinformatics Software Engineer – Land A Remote Job From Top Employers

The Center for Applied Bioinformatics (CAB) at the St. Jude Children’s Research Hospital (SJCRH) is seeking a creative Software Engineer with a strong background in bioinformatics to join our development team to create and maintain our vital analytical infrastructure. The new hire will work closely with a team of computer…

Continue Reading Senior Bioinformatics Software Engineer – Land A Remote Job From Top Employers

A Comprehensive Guide to Google’s Machine Learning Platform

Vertex AI is not merely another product in the machine learning (ML) landscape; it’s Google’s cohesive effort to harmonize the ML workflow under a singular, streamlined umbrella. Launched in Spring 2021, Vertex AI embodies Google Cloud’s ambition to democratize artificial intelligence, combining Google Cloud AI’s best features and services into…

Continue Reading A Comprehensive Guide to Google’s Machine Learning Platform

JupyterHub custom server options drop down menus – Zero to JupyterHub on Kubernetes

gcerar November 27, 2023, 3:22pm 1 Is it possible to achieve something similar on bare-metal Z2JH deployment, as shown in the Figure below? I’m thinking of revamping our cluster and I would offering a selection of docker images, where users could pick any number of GPUs and reserve a certain…

Continue Reading JupyterHub custom server options drop down menus – Zero to JupyterHub on Kubernetes

PyTorch vs TensorFlow in 2023

The Ultimate Comparison: PyTorch vs TensorFlow in 2023 Practical Considerations when Comparing PyTorch with TensorFlow Availability of Models Model Deployment Ecosystem Differences Comparing PyTorch and TensorFlow on Model Availability Hugging Face Hub TensorFlow Models Migration Trends Jacks Conclusion Comparing PyTorch and TensorFlow on Model Deployment TensorFlow Serving TensorFlow Lite Torch…

Continue Reading PyTorch vs TensorFlow in 2023

5 Ways to Boost Your Marketability as a Tech Contractor

Whether you’re looking to earn some cash before the next full-time hiring boom or elevate your tech freelance career, knowing what employers are looking for when they hire tech contractors and how to market your skill-set can work to your advantage. The good news is there’s no shortage of opportunities….

Continue Reading 5 Ways to Boost Your Marketability as a Tech Contractor

Senior ML/AI Developer VAN465 Job in Airstack at Delhi -Job Description #13366250

Senior ML/AI Developer VAN465 Job in Airstack at Delhi -Job Description #13366250 – Shine.com Hi Job Details About Airstack Airstack is a developer platform that empowers developers to seamlessly query and integrate any web3 on-chain data and associated off-chain data into their applications. Superior to preceding platforms, Airstack facilitates intricate…

Continue Reading Senior ML/AI Developer VAN465 Job in Airstack at Delhi -Job Description #13366250

Microservices for beginners. Spam service. Python. Scikit-learn. Kafka.

Whole series: Microservices for beginners Microservices for beginners. Front-end service. Vue js. Socket.io. Microservices for beginners. Api Gateway service. Nest js. Kafka. Microservices for beginners. User service. Nest js. Mongodb. Kafka. Microservices for beginners. Message service. Nest js. Mongodb. Kafka. Microservices for beginners. Spam service. Python. Scikit-learn. Kafka. Microservices for…

Continue Reading Microservices for beginners. Spam service. Python. Scikit-learn. Kafka.

PDF Programming PyTorch for Deep Learning: Creating and Deploying Deep Learning Applications

Programming PyTorch for Deep Learning: Creating and Deploying Deep Learning ApplicationsMore:wldwakabooks.blogspot.com/?book=1492045357 Book Summary:Take the next steps toward mastering deep learning, the machine learning method thatâ??s transforming the world around us by the second. In this practical book, youâ??ll get up to speed on key ideas using Facebookâ??s open source PyTorch…

Continue Reading PDF Programming PyTorch for Deep Learning: Creating and Deploying Deep Learning Applications

Lead data scientist ml ops pytorch pyspark nlp – London – Job November 2023

Posted: 15h ago Offer description Lead Data Scientist (ML Ops Pytorch Pyspark NLP), London – Gradsouthwest * Register * Log In * Recruiters Home >Job Search Results >Lead Data Scientist (ML Ops Pytorch Pyspark NLP), London Lead Data Scientist (ML Ops Pytorch Pyspark NLP) * Job Reference: 1166205272-2 * Date…

Continue Reading Lead data scientist ml ops pytorch pyspark nlp – London – Job November 2023

Docker Container Request

Generally, we’ve been asking people to host a Docker image, generally on Dockerhub that will contain the additional dependencies needed. We happen to have an old file laying around for Pytorch + Scipy and can rebuild that. It will be available here: If you have more dependencies, I recommend providing us with…

Continue Reading Docker Container Request

Tools for Efficient Retrieval from GEO and SRA Databases | by Denis Odinokov, MBBS, MSc, PMP | Nov, 2023

Image by Gerd Altmann from Pixabay For downloading data and standardized metadata from GEO (Gene Expression Omnibus) and SRA (Sequence Read Archive), several bioinformatics and command-line tools and scripts are available, primarily hosted on GitHub. ARA: An automated pipeline developed for better sampling of NCBI SRA database records, allowing full…

Continue Reading Tools for Efficient Retrieval from GEO and SRA Databases | by Denis Odinokov, MBBS, MSc, PMP | Nov, 2023

Vertex AI MLOps Engineer – IBU Consulting Pvt Ltd

Job Description: Job Summary: The Vertex AI MLOps Engineer plays a crucial role in the design, implementation, and maintenance of machine learning operations (MLOps) processes within the organization. The primary focus is on deploying and managing machine learning models using Google Cloud’s Vertex AI platform. This role requires a strong…

Continue Reading Vertex AI MLOps Engineer – IBU Consulting Pvt Ltd

Analyzing somatic mutations by single-cell whole-genome sequencing

Failla, G. The aging process and cancerogenesis. Ann. N. Y. Acad. Sci. 71, 1124–1140 (1958). Article  CAS  PubMed  Google Scholar  Szilard, L. On the nature of the aging process. Proc. Natl Acad. Sci. USA 45, 30–45 (1959). Article  CAS  PubMed  PubMed Central  Google Scholar  Vijg, J. & Dong, X. Pathogenic…

Continue Reading Analyzing somatic mutations by single-cell whole-genome sequencing

[Hiring] QA Engineer Release Manager @Lifebit Biotech Ltd at Lifebit Biotech Ltd

Nov 22, 2023 – Lifebit Biotech Ltd is hiring a remote QA Engineer Release Manager. 📍Location: Europe. At Lifebit, we carve our own path. We’re open-source pioneers and our driving mission is to revolutionise bioinformatics and biomedical data analysis forever. Our product, Lifebit CloudOS, is the world’s first federated genomics…

Continue Reading [Hiring] QA Engineer Release Manager @Lifebit Biotech Ltd at Lifebit Biotech Ltd

NuGet Gallery | Microsoft.AspNetCore.OpenApi 7.0.0-preview.5.22303.8

Product Versions Compatible and additional computed target framework versions. .NET net7.0 net7.0 is compatible.  net7.0-android net7.0-android was computed.  net7.0-ios net7.0-ios was computed.  net7.0-maccatalyst net7.0-maccatalyst was computed.  net7.0-macos net7.0-macos was computed.  net7.0-tvos net7.0-tvos was computed.  net7.0-windows net7.0-windows…

Continue Reading NuGet Gallery | Microsoft.AspNetCore.OpenApi 7.0.0-preview.5.22303.8

Allen Institute for AI (AI2) hiring Head of Bioinformatics at Stealth Life Science Startup in Seattle, WA

About UsWe are an early stage startup using generative AI to fundamentally change life sciences research and accelerate the pace of biomedical discovery. Genomic data are at the heart of most modern molecular studies and tools, from basic research to clinical decision support, but these data are hard to work…

Continue Reading Allen Institute for AI (AI2) hiring Head of Bioinformatics at Stealth Life Science Startup in Seattle, WA

Salmon index problem

Salmon index problem 0 Hello, I’m trying to use Salmon in the mapping-based mode, and I downloaded the full decoy salmon indices via refgenie list here using the refgenie command refgenie pull hg38/salmon_sa_index and it download the full folder locally. Now I have this index folder and SRR21898893_1.fastq.gz and SRR21898893_2.fastq.gz…

Continue Reading Salmon index problem

AMD arms three of its gaming GPUs with PyTorch and ROCm support for AI development

AMD announced that three of its RDNA3 desktop graphics cards, the Radeon RX 7900 XT, 7900 XTX, and the Radeon Pro 7900, will now support machine learning development via PyTorch and its ROCm software. PyTorch was originally made by Meta AI but is currently a part of the Linux Foundation….

Continue Reading AMD arms three of its gaming GPUs with PyTorch and ROCm support for AI development

JetPack 4.6.1 (L4T R32.7.1): PyTorch allocates all the memory + swap! – Jetson Nano

Hi, I’m trying to use my Jetson Nano with PyTorch by using this official docker image: nvcr.io/nvidia/l4t-pytorch:r32.7.1-pth1.10-py3However, when I move anything to the “GPU” memory, it allocates all the memory + swap making it unusable.Want to reproduce it, just try python3 -c “import torch; torch.rand(1).cuda();” from inside the container.According to…

Continue Reading JetPack 4.6.1 (L4T R32.7.1): PyTorch allocates all the memory + swap! – Jetson Nano

Pass reads file form host to container

Docker: Pass reads file form host to container 0 Hello, I need your help please. I want to create docker container to analyse my reads, to run it via nextflow or wdl worflow. I have a python script, and I would like to pass my reads as argument something like…

Continue Reading Pass reads file form host to container

Awesome List Updates on Nov 22, 2023

6 awesome lists updated today. 🏠 Home · 🔍 Search · 🔥 Feed · 📮 Subscribe · ❤️ Sponsor CI / Tools & Plugins Lightning – Framework to integrate JMeter non-functional tests with CI/CD server. Tools / Utilities Hamster (⭐9) – Swiftly launch your JMeter test plans from Mac menubar….

Continue Reading Awesome List Updates on Nov 22, 2023

Hub.db.type usage – Zero to JupyterHub on Kubernetes

Hello, members. Could someone tell me about hub.db.type database feature? Zero to JupyterHub with Kubernetes Configuration Reference The JupyterHub Helm chart is configurable by values in your config.yaml. In this way, you can extend user resources, build off of different Docker images, manage security and authentication, and mo… What pod…

Continue Reading Hub.db.type usage – Zero to JupyterHub on Kubernetes

Software Developer job with European Molecular Biology Laboratory (EMBL)

About the team/job EMBO is a not-for-profit organization that promotes excellence in life sciences in Europe and beyond. We fund talented researchers at all stages of their careers, stimulate scientific exchanges through high-quality academic publishing, conferences and lectures, and help build a research environment where scientists can achieve their best…

Continue Reading Software Developer job with European Molecular Biology Laboratory (EMBL)

JupyterHubSingleUser – Failed to connect to my Hub at http://127.0.0.1:8081/hub/api – JupyterHub – Jupyter Community Forum

After updating the base notebook image to Quay (base-notebook:2023-10-31) getting these connection errors in single user server spawn. Earlier used version jupyter/base-notebook:2023-04-14 this working without any errors. (python3.10 version used in working docker image) Environment:Used helm chart version “3.0.3” to deploy the 4.0.2 version of application on AWS EKS Cluster….

Continue Reading JupyterHubSingleUser – Failed to connect to my Hub at http://127.0.0.1:8081/hub/api – JupyterHub – Jupyter Community Forum

Only 1 OpenAPI scan found.

I’m trying to scan openapi with the docker version of ZAP from localhost. Here is the command. docker run -t ghcr.io/zaproxy/zaproxy:stable zap-api-scan.py -t 10.231.232.31:3000 -f openapi -z “-addoninstall OpenAPI Support -openapifile /Users/(my_app_path)/swagger.json” Here is the log after execution. 2023-11-21 00:47:52,648 Number of Imported URLs: 1 Total of 79 URLs PASS:…

Continue Reading Only 1 OpenAPI scan found.

Problems spawning single-user-servers (using groups) – JupyterHub

csee November 20, 2023, 10:35am 1 I have a JupyterHub 4.0 running, and it works fine with “normal” users.Using dockerspawner those users can spawn and use their own servers.But when I define a special group of users (that should have additional rights accessing a service), those users cannot spawn single-user-severs…

Continue Reading Problems spawning single-user-servers (using groups) – JupyterHub

Doing cheap PyTorch inference with Modal.com

(Disclaimer: This is not a paid endorsement and I have no affiliation with Modal Labs) A startup recently asked me to help them design an infrastructure where they can: run pretrained PyTorch model on some inputs, such that the execution happens after some customer actions, but shouldn’t last more than…

Continue Reading Doing cheap PyTorch inference with Modal.com

python 3.x – Can’t create Vertex AI (GCP) notebook with custom container

I’m trying to create a Vertex AI notebook using a Custom Container to train my torch model on GCP. I wasn’t able to correctly generate a notebook using this custom container and I can’t understand why. I tried to look at the documentation but wasn’t able to identify any pages…

Continue Reading python 3.x – Can’t create Vertex AI (GCP) notebook with custom container

RStudio Docker running successfully on Debian 12, can’t see on the browser at localhost:port

I have a Dockerfile and YAML file to docker compose up on a port. rstudio4.3.1.Dockerfile: FROM rocker/rstudio:4.3.1 ENV PASSWORD=password RUN apt update && apt install libsodium-dev libopenmpi-dev libmpfr-dev openmpi-bin \ libgsl-dev gsl-bin coinor-clp coinor-libclp-dev gdal-bin libgdal-dev libgeos-dev \ libudunits2-dev libpoppler-glib-dev libpoppler-cpp-dev -y RUN install2.r –error –deps TRUE \ tidytable #…

Continue Reading RStudio Docker running successfully on Debian 12, can’t see on the browser at localhost:port

Delivery Hero’s GitHub-Vertex AI Voucher Fraud Detection | by Agarapu Ramesh | Nov, 2023

Read more on Govindhtech.com Effective model maintenance is essential in machine learning’s ever-changing world. Fraud detection models must be redeployed often to combat human opponents that may reverse-engineer fraud engine logic and change their methods. At Delivery Hero, a prominent local delivery platform, the Incentive Fraud team builds ML-powered, rule-based…

Continue Reading Delivery Hero’s GitHub-Vertex AI Voucher Fraud Detection | by Agarapu Ramesh | Nov, 2023

European Bioinformatics Institute | EMBL-EBI hiring Full Stack Engineer in Hinxton, England, United Kingdom

We are looking for a Software Developer to join the European Variation Archive (EVA – www.ebi.ac.uk/eva/) team. The EVA is a cutting-edge genetic data repository that plays a pivotal role in the field of genomics. The EVA hosts billions of variants across hundreds of species and is expected to grow…

Continue Reading European Bioinformatics Institute | EMBL-EBI hiring Full Stack Engineer in Hinxton, England, United Kingdom

Sr Scientist I, Bioinformatics Engineer job with AbbVie

The Genomics Research Center (GRC) is a center of excellence for genetics and genomics that supports both Discovery and Development. The GRC plays an integral role towards our goal of developing extraordinary genetics and genomics research, focusing on finding the right targets and helping us better understand not only human…

Continue Reading Sr Scientist I, Bioinformatics Engineer job with AbbVie

NeoGenomics Laboratories Careers – Bioinformatics Scientist

Are you motivated to participate in a dynamic, multi-tasking environment? Do you want to join a company that invests in its employees? Are you seeking a position where you can use your skills while continuing to be challenged and learn? Then we encourage you to dive deeper into this opportunity….

Continue Reading NeoGenomics Laboratories Careers – Bioinformatics Scientist

MAJOR Computational Biology Research Lab

MAJOR Computational Biology Research Lab (MCBRL) uses computer science algorithms to solve biology related problems, bioinformatics software development and develop bioinformatics cloud computing platforms or services for handling and analyzing large-scale biological data.. The workflow of hdWGCNA analysis for Single-cell Spatial Transcriptomics data RNA-seq Schematicsc/nRNA-seq Schematic ” RNA-seq Schematic 空间转录共表达网络分析流程…

Continue Reading MAJOR Computational Biology Research Lab

Create a Movie Recommendation Engine with Milvus and Python

Recommender systems or recommendation engines are information-filtering systems that aim to predict and suggest things users might be interested in. These items include products, services and content such as movies, books, music or news articles. There are various types of recommender systems, such as collaborative filtering, content-based filtering, hybrid recommendation…

Continue Reading Create a Movie Recommendation Engine with Milvus and Python

Run PyTorch Docker Container on Ubuntu with Lambda Stack

Run PyTorch Docker Container on Ubuntu with Lambda Stack Introduction Installing Lambda Stack The One-Line Command Install Installing Nvidia Drivers Installing Deep Learning Libraries and Frameworks Keeping Libraries Up-to-Date Rebooting the System Installing Docker and Nvidia Container Toolkit Installing the Latest Version of Docker Installing the Nvidia Container Toolkit Checking…

Continue Reading Run PyTorch Docker Container on Ubuntu with Lambda Stack

Serving a PyTorch Model with FastAPI and Docker | by Marcello Politi | Nov, 2023

Photo by SpaceX on Unsplash Learn how to develop a complete Machine Learning Service Working on personal Machine/Deep Learning projects is very enjoyable. In the evenings, in front of the laptop, you code things you like, you read interesting papers, and you don’t have any deadlines to meet. We all…

Continue Reading Serving a PyTorch Model with FastAPI and Docker | by Marcello Politi | Nov, 2023

sql – What is the error in the code.? It is not getting executed. What to do?

I am working on kaggle notebook to clean a dataset using SQL. I intent to convert the ‘Saledate’ column of table ‘housing’ which has timestamp to date datatype. below is the code # This Python 3 environment comes with many helpful analytics libraries installed # It is defined by the…

Continue Reading sql – What is the error in the code.? It is not getting executed. What to do?

Full Stack Developer – European Variation Archive Team at European Molecular Biology Laboratory (EMBL)

About the team/job The European Bioinformatics Institute (EMBL-EBI) is seeking a Software Developer to join the European Variation Archive (EVA – www.ebi.ac.uk/eva/) team. The EVA is a cutting-edge genetic data repository that plays a pivotal role in the field of genomics. The EVA hosts billions of variants across hundreds of…

Continue Reading Full Stack Developer – European Variation Archive Team at European Molecular Biology Laboratory (EMBL)

Boost Your Model Training and Experimentation with Vertex AI

Boost Your Model Training and Experimentation with Vertex AI Introduction Why Hyperparameter Tuning and Distributed Training? Basics of Vertex AI Setting Up the Environment Preparing the Training Code Containerizing the Code Launching the Hyperparameter Tuning Job Monitoring and Analyzing the Results Alternative Method: Using the UI Conclusion In this article,…

Continue Reading Boost Your Model Training and Experimentation with Vertex AI

Docker TLJH Reason – The Littlest JupyterHub

testa November 15, 2023, 4:28pm 1 Hi. I am running TLJH on a local (powerfull) server as a docker container since few weeks now. I exchanged the base image to use a cuda-enabled one. It’s working like charm. But since day one I wonder about the statement on the webpage:Running…

Continue Reading Docker TLJH Reason – The Littlest JupyterHub

PyTorch on ROCm in Docker in QEMU fails – deployment

I know the obvious answer to this is probably that there are just too many layers of jank, and it’s even worse than the title. I’m running PyTorch from the rocm/pytorch Docker container. I’m starting the container by running: docker run -it –network=host –device=/dev/kfd –device=/dev/dri –group-add=video –ipc=host –cap-add=SYS_PTRACE –security-opt seccomp=unconfined…

Continue Reading PyTorch on ROCm in Docker in QEMU fails – deployment

AVX error with Deepvariant caller

I installed Deepvariant 1.6.0 on a: Dell poweredge R910, 128 Gb of RAM, 36 cores. The is machine has windows 10 LTSC installed on it. However, also installed on it is: Virtual box 6.0 Ubuntu 20.04 LTS Controller ID: Vboxguestaddtions_6.06 Deepvariant was installed on ubuntu 20.04 LTS using docker: github.com/google/deepvariant…

Continue Reading AVX error with Deepvariant caller