Tag: EdU

Bioinformatics Programmer 4 (Hybrid) – 120485

UCSD Layoff from Career Appointment: Apply by 12/13/22 for consideration with preference for rehire. All layoff applicants should contact their Employment Advisor. Special Selection Applicants: Apply by 12/22/22. Eligible Special Selection clients should contact their Disability Counselor for assistance. This position will remain posted until a suitable candidate has been…

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Faculty Positions in Biological Sciences, Immunology job with XIAN JIAOTONG LIVERPOOL UNIVERSITY (XJTLU)

School: School of Science Department: Biological Sciences Position: Faculty Positions in Biological Sciences_Immunology Location: Suzhou, China Contract Type: Fixed-term, renewable. 3rd contract is open-ended ABOUT XJTLU In 2006 Xi’an Jiaotong-Liverpool University (XJTLU) was created by the University of Liverpool and Xi’an Jiaotong University – a top ten university in China….

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Any good tools for biological annotation of ChIP-seq broadpeak (H3K9me3, H3K27me3)?

Any good tools for biological annotation of ChIP-seq broadpeak (H3K9me3, H3K27me3)? 0 Hi, I have called ChIP-seq broadpeak (H3K9me3, H3K27me3) using SICER2 in mm10. The peak looks good and consistent with the IGV findings. Is there any good tools to annotate these broad peaks to coding genes? I know GREAT(great.stanford.edu/public/html/)…

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Lecturer / Associate Professor (Biostatistics), Curtin Medical School job with CURTIN UNIVERSITY

$125,937-166,536 (ALC/D) plus 17% superannuation 4-year fixed contract, full-time role Based within the Curtin Medical School Your new role We have an exciting opportunity for a senior biostatistician or bioinformatics expert experienced in analysing medical related data to work for Curtin University on a full-time basis….

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Postdoctoral Research in Bioinformatics at Harvard University

We seek individuals with programming experience using Next Generation Sequencing data. A Bioinformatics/Genomics postdoctoral fellow position is available immediately in the Department of Pathology at Harvard Medical School/Beth Israel Deaconess Medical Center to study microRNAs in diagnostic and therapeutic applications for Alzheimer’s Disease. The position is under the direction of…

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Research Fellow, Bioinformatics job with NATIONAL UNIVERSITY OF SINGAPORE

Job Description We are seeking for a full-time bioinformatician in the cancer biology laboratory of Dr. Shruti Bhatt in the Department of Pharmacy at the National University of Singapore.  Check out Bhatt lab research focus, via this link:   pharmacy.nus.edu.sg/team/asst-prof-shruti-bhatt/ We are looking for candidates who share our excitement to…

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scRNA-seq for Microcephaly Research [I]: Single-Cell Droplet Encapsulation, mRNA Capture, and cDNA Synthesis

doi: 10.1007/978-1-0716-2752-5_8. Affiliations Expand Affiliations 1 Department of Medicine, Division of Immunology, Lowance Center for Human Immunology, Emory University School of Medicine, Atlanta, GA, USA. ben.babcock@emory.edu. 2 Department of Neurology, University of North Carolina Medical School, Chapel Hill, NC, USA. Item in Clipboard Benjamin Babcock et al. Methods Mol Biol. 2023….

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Risk for lymphoma after postmastectomy breast implant reconstruction ‘still extremely low’

November 22, 2022 2 min read Source/Disclosures Published by: Source: Kinslow CJ, et al. JAMA Netw Open. 2022;doi:10.1001/jamanetworkopen.2022.43396. Disclosures: Kinslow reports no relevant financial disclosures. Please see the study for all other authors’ relevant financial disclosures. ADD TOPIC TO EMAIL ALERTS Receive an email when new articles are posted on…

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University of Alabama at Birmingham Open Rank – Division of Genomic Diagnostics & Bioinformatics (GDB) in Birmingham, AL

Department of Pathology University of Alabama at Birmingham Division of Genomic Diagnostics & Bioinformatics The Department of Pathology, at the University of Alabama at Birmingham (UAB) is inviting applications from qualified candidates at the Assistant, Associate, and Full Professor level for a full-time, open tenure earning position through the Department…

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Part-Time Lecturer, Science Courses for Bioinformatics Graduate Programs job with Northeastern University

Part-Time Lecturer, Science Courses for Bioinformatics Graduate Programs About the Opportunity About the Opportunity Responsibilities include the following: review and learn key teaching points within existing instructor guides; be willing to support high-quality teaching and standards through preparation of lectures based on course materials provided; facilitate rich respectful debates and…

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Postdoc position Infectious Disease Epidemiology

The lab of professor Moradigaravand at KAUST has an opening for one postdoctoral fellowship in Bioinformatics (postdoc.kaust.edu.sa), as part of the KAUST Smart Health Initiative, to investigate the genetic basis of key clinical features of bacterial infections. This position suits recent PhDs, MD/PhDs, with a career interest in computational biology,…

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Professor/Associate Professor/Assistant Professor, Department of Computer Science and Engineering job with CHINESE UNIVERSITY OF HONG KONG

Applications are invited for:- Department of Computer Science and Engineering Professor(s) / Associate Professor(s) / Assistant Professor(s) (Ref: 220002PK) (Closing date: May 31, 2023) The Department of Computer Science and Engineering (CSE) at the Chinese University of Hong Kong has multiple tenure-track faculty positions at all ranks to pursue new…

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Bioconductor – RLHub (development version)

DOI: 10.18129/B9.bioc.RLHub     This is the development version of RLHub; for the stable release version, see RLHub. An ExperimentHub package for accessing processed RLSuite data sets Bioconductor version: Development (3.17) | RLHub provides a convenient interface to the processed data provided within RLSuite, a tool-chain for analyzing R-loop-mapping data…

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Postdoctoral Scholar- Bioinformatics job with University of Florida

Postdoctoral Scholar- Bioinformatics Job No: 524142Work Type: Location: Main Campus (Gainesville, FL), AlachuaCategories: RealCatDepartment: 32030000 – PH-MEDICINAL CHEMISTRY Job Description Classification Title: Postdoctoral Associate Job Description: The Postdoctoral Scholar will work independently and collaboratively to develop a bioinformatics platform for discovering bioactive compounds directly from less-explored marine organisms. Additional duties…

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Bioinformatics Programmer 3 – 119617

UCSD Layoff from Career Appointment: Apply by 10/25/2022 for consideration with preference for rehire. All layoff applicants should contact their Employment Advisor. Special Selection Applicants: Apply by 11/3/2022. Eligible Special Selection clients should contact their Disability Counselor for assistance. The Bioinformatics Programmer’s will apply complex bioinformatics concepts to design and…

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Genome-wide identification of disease-causing copy number variations in 450 individuals with anorectal malformations

CNV analysis After the application of quality filter step I (gender mismatch), two patients were excluded. Through step II (call rate <98%), 40 patients were discarded and after step III (exceeded double of standard deviation), 12 more patients were excluded. In the remaining 396 individuals with ARM, a total of…

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Postdoc Positions in Bioinformatics and Computer aided drug-design [BIDD]

Postdoc Positions in Bioinformatics and Computer aided drug-design: Applications are invited for two SMA research fellow positions in either bioinformatics, or biomodeling and drug-design. The initial appointment is for two years and the salary is S$4,000 (US$2350) per month. There is opportunity…

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Algorithm helps in massive global effort to develop a more complete human reference genome

October 27, 2022October 27, 2022 A Clemson University professor has found himself at the heart of a monumental, international effort to sequence the human reference genome. Feng Luo, the Marvin J. Pinson, Jr. ’46 Distinguished Professor in Clemson’s School of Computing, helped develop an algorithm used in the project’s…

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Completed: Quarterly Cluster Maintenance Tuesday October 25 | crc.pitt.edu

Dear CRC User Community, We have completed our quarterly maintenance and have returned the clusters to production. The key changes to the CRC clusters are the following: Storage Systems updates – Improved performance of iX with cache upgrades SLURM Workload Manager –  Update to newest version (22.05) Due to incompatibility between…

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Phenotypic plasticity and genetic control in colorectal cancer evolution

Sample preparation and sequencing The method of sample collection and processing is described in a companion article (ref. 23). Sequencing and basic bioinformatic processing of DNA-, RNA- and ATAC-seq data are included there as well. Gene expression normalization and filtering The number of non-ribosomal protein-coding genes on the 23 canonical chromosome pairs…

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Syracuse University Online Employment Site | Post Doc

Job # 076742 Job Title Post Doc – Genomics and Bioinformatics Location Syracuse, NY Pay Range Commensurate with Experience FLSA Status Exempt Hours As determined by PI. Job Type Full-time Rank Post Doc Campus Syracuse, NY Unionized Position Code Not Applicable Job Description The Ahmed-Brimah Lab at Syracuse University invites…

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Postdoctoral Fellow in AI / Bioinformatics, Genetics and Sys Bio

Job Description Job Details: General Notes Prof. S. Stephen Yi’s lab at the University of Texas at Austin invites applications for a postdoctoral fellowship in Bioinformatics, Genetics and Systems Biology starting immediately. We have a longstanding interest in the fundamental question on genotype-phenotype relationships. Prof. Yi is Director of Bioinformatics…

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UCSC Genome Browser | Encyclopedia MDPI

1. History Initially built and still managed by Jim Kent, then a graduate student, and David Haussler, professor of Computer Science (now Biomolecular Engineering) at the University of California, Santa Cruz in 2000, the UCSC Genome Browser began as a resource for the distribution of the initial fruits of the…

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Bioconductor – clusterExperiment

DOI: 10.18129/B9.bioc.clusterExperiment     Compare Clusterings for Single-Cell Sequencing Bioconductor version: Release (3.5) Provides functionality for running and comparing many different clusterings of single-cell sequencing data or other large mRNA Expression data sets. Author: Elizabeth Purdom [aut, cre, cph], Davide Risso [aut], Marla Johnson [ctb] Maintainer: Elizabeth Purdom <epurdom at…

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Inferring and perturbing cell fate regulomes in human brain organoids

Experimental methods Stem cell and organoid culture We used six human iPS cell lines (Hoik1, Wibj2, Kucg2 from the HipSci resource47; 409B2 from the RIKEN BRC cell bank; 01F49i-N-B7 (B7) from Institute of Molecular and Clinical Ophthalmology Basel; and WTC from the Allen Institute) and three human ES cell lines (H1-PAX6YFP…

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Bioconductor – MafH5.gnomAD.v3.1.1.GRCh38 (development version)

DOI: 10.18129/B9.bioc.MafH5.gnomAD.v3.1.1.GRCh38     This is the development version of MafH5.gnomAD.v3.1.1.GRCh38; for the stable release version, see MafH5.gnomAD.v3.1.1.GRCh38. Minor allele frequency data from gnomAD version 3.1.1 for GRCh38 Bioconductor version: Development (3.16) Store minor allele frequency data from the Genome Aggregation Database (gnomAD version 3.1.1) for the human genome version…

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Bioinformatics Analyst job in Lexington, Kentucky at University of Kentucky

Posting Details Posting Details Job Title Bioinformatics Analyst Requisition Number RE35885 Working Title Department Name 7H025:CANCER CENTER-CORE SUPPORT Work Location Lexington, KY Grade Level 46 Salary Range $50,981-84,115/year Type of Position Staff Position Time Status Full-Time Required Education MS Click here for more information about equivalencies: www.uky.edu/hr/employment/working-uk/equivalencies Required Related Experience…

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NCSU Job Openings – Full Professor – Bioinformatics

Posting Details Posting Information Posting Number PG191392EP Internal Recruitment No Working Title Assistant/Associate/Full Professor – Bioinformatics Anticipated Hiring Range Commensurate With Credentials, Qualifications, And Experience Work Schedule Academic position – schedule varies. Job Location Raleigh, NC Department Chancellor’s Faculty Excellence Program About The Department NC State University provides a vibrant…

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Duke University, Biostatistics & Bioinformatics

Postdoctoral Research Fellow in Biostatistics and Bioinformatics Established in 1930, Duke University School of Medicine is the youngest of the nation’s top medical schools. Ranked tenth among its peers, the School takes pride in being an inclusive community of outstanding learners, investigators, clinicians, and staff where traditional barriers are…

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As of July 2015, the VCFtools project has been moved to github! Please visit the new website here: vcftools.github.io/man_0112a.html

NAME SYNOPSIS DESCRIPTION EXAMPLES BASIC OPTIONS SITE FILTERING OPTIONS INDIVIDUAL FILTERING OPTIONS GENOTYPE FILTERING OPTIONS OUTPUT OPTIONS COMPARISON OPTIONS AUTHOR NAME VCFtools v0.1.12a − Utilities for the variant call format (VCF) and binary variant call format (BCF) SYNOPSIS vcftools [ –vcf FILE | –gzvcf FILE | –bcf FILE]…

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Engineered LwaCas13a with enhanced collateral activity for nucleic acid detection

doi: 10.1038/s41589-022-01135-y. Online ahead of print. Jie Yang #  1 , Yang Song #  2   3 , Xiangyu Deng  4 , Jeffrey A Vanegas  1 , Zheng You  1 , Yuxuan Zhang  2   3 , Zhengyan Weng  2   3 , Lori Avery  5 , Kevin D Dieckhaus  6 , Advaith Peddi  4 , Yang Gao  7 , Yi Zhang  8…

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Genetic footprints of assortative mating in the Japanese population

Study cohort description We used data on a total of 172,270 individuals of Japanese and East Asian ancestry. Of these, data on 165,098 individuals were obtained from BBJ, which has enrolled ≥200,000 participants to date. BBJ is a multi-institutional hospital-based genome cohort that collected participants affected with at least one…

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Senior/Junior Postdoctoral fellow in Bioinformatics

Highly motivated candidates are invited to apply for a 2-year postdoctoral position (with the possibility of an extension) in the laboratory of Assoc. Professor David Gomez-Cabrero in the Biological and Environmental Sciences and Engineering (BESE) Division at the King Abdullah University of Science and Technology (KAUST) (www.kaust.edu.sa/en/study/faculty/david-gomez-cabrero). The project investigates…

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Post-Doctoral Associate in the Division of Science Biology, Dr. Fabio Piano job with NEW YORK UNIVERSITY ABU DHABI

Description Our laboratory at New York University Abu Dhabi is expanding our expert team working on molecular networks and analysis of bioactive molecules in animal development using C. elegans. We use muti-disciplinary approaches to uncover mechanisms underlying fundamental biomolecular and biochemical processes during embryonic development.  A long standing interest in the laboratory has…

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A Phase 3, Open-Label, Randomized Study of Futibatinib Versus Gemcitabine-Cisplatin Chemotherapy as First-Line Treatment of Patients with Advanced Cholangiocarcinoma Harboring FGFR2 Gene Rearrangements

Official Trial Title A phase 3, open-label, randomized study of futibatinib versus germcitabine-cisplatin chemotherapy as first-line treatment of patients with advanced cholagiocarcinoma harboring FGFR2 gene rearrangements (FOENIX-CCA3) Study Description The University of Virginia is participating in a global clinical research study for adults ages 18 years of age, and over…

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Can AlphaFold be used?MIT new research: not much better than random guessing, still needs to continue to improve

After AlphaGo defeated Ke Jie, the world’s No. 1 Go player in 2017, AlphaFold 2 was born in 2020, making artificial intelligence (AI) successful again. 2 years later, what about AlphaFold today? In July this year, DeepMind and EMBL-EBI used AlphaFold to predict almost all known proteins on the earth,…

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Bioinformatics Programmer 2 – 118717

UCSD Layoff from Career Appointment: Apply by 09/09/2022 for consideration with preference for rehire. All layoff applicants should contact their Employment Advisor. Special Selection Applicants: Apply by 09/21/2022. Eligible Special Selection clients should contact their Disability Counselor for assistance. The Bioinformatics Programmer will work with a multi-disciplinary group to adapt…

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Bioinformatics Analyst II – Medical College of Wisconsin

Job Profile: Bioinformatics Analyst II Requisition ID #: 28991 Job Category: Research Employment Type: Full Time Experience Level: Postdoctoral City, State: Milwaukee, WI Work Location: Health Research Center Department: Surgery Education: Doctorate Degree Position Description: Every great life-changing discovery begins the same way—with new knowledge. It can change everything, from a single life to the future of entire…

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Ncbi Wgs Portal

Login page for ncbi wgs portal is presented below. Log into ncbi wgs portal page with one-click or find related helpful links. Last Updated: 17th August, 2022 WGS – NCBI – NIH   www.ncbi.nlm.nih.gov/genbank/wgs Nov 13, 2017 – Whole Genome Shotgun (WGS) projects are genome assemblies of incomplete genomes or…

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[gmx-users] box type

Post by Sana Saeedhi gmx userscan we use truncated octahedron as -bt (box type) in gromacs. The user manual knows the answer. -Justin—================================================== Justin A. Lemkul, Ph.D.Ruth L. Kirschstein NRSA Postdoctoral Fellow Department of Pharmaceutical SciencesSchool of PharmacyHealth Sciences Facility II, Room 629University of Maryland, Baltimore20 Penn St.Baltimore, MD 21201…

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“Increasing Production of Therapeutic mAbs in CHO Cells through Genetic” by Charles Barentine

Abstract Between 2014 and 2018, the global market for therapeutic monoclonal antibodies (mAbs) rose from $60 billion to $115.2 billion with a projected value of $300 billion by 2025. These molecules are used to effectively treat some of the most challenging illnesses from auto-immune diseases to cancer. While mAbs are…

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Live-seq enables temporal transcriptomic recording of single cells

Biological materials RAW264.7, 293T and HeLa cells were obtained from ATCC. RAW264.7 cells with Tnf-mCherry reporter and relA-GFP fusion protein (RAW-G9 clone) were kindly provided by I.D.C. Fraser (National Institutes of Health). The IBA cell line derived from the stromal vascular fraction of interscapular brown adipose tissue of young male…

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mapping – STAR error in snakemake pipeline: “EXITING because of FATAL ERROR: could not open genome file”

I’m trying to use a 2 pass STAR mapping strategy (also explained here informatics.fas.harvard.edu/rsem-example-on-odyssey.html), but I’m getting an error. I’ve read through this page [https://github.com/alexdobin/STAR/issues/181] and I have a similar issue, but the discussed solutions don’t seem to help. Perhaps this is more a snakemake issue rather than a STAR…

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Bioconductor – mvoutData (development version)

DOI: 10.18129/B9.bioc.mvoutData     This is the development version of mvoutData; for the stable release version, see mvoutData. affy and illumina raw data for assessing outlier detector performance Bioconductor version: Development (3.16) affy and illumina raw data for assessing outlier detector performance Author: VJ Carey <stvjc at channing.harvard.edu> Maintainer: VJ…

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Senior Research Fellow, Quantitative Research Scientist – CHILD job with NATIONAL UNIVERSITY OF SINGAPORE

Job Description An exciting position is available with the NUS Yong Loo Lin School of Medicine’s Centre for Holistic Initiatives for Learning and Development (CHILD) for an enthusiastic, collaborative senior research fellow (research scientist) with strong quantitative skills. The scientist will work within highly transdisciplinary teams across multiple projects aiming…

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UMaine, UNH researchers to study how foraging adaptations affect Arctic charr resilience or vulnerability to climate change – UMaine News

Photo of former University of Maine graduate student Mitch Paisker releasing a female Arctic charr that was captured, tagged and measured back into Floods Pond in 2018.Photo by Bradley Erdman. University of Maine and University of New Hampshire researchers will investigate how the diversity and evolution of feeding habits among…

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Lecturer / Senior Lecturer in Bioengineering job with KING ABDULLAH UNIVERSITY OF SCIENCE & TECHNOLOGY

Location King Abdullah University of Science and Technology Description KAUST is accepting applications for two Lecturer / Senior Lecturer positions in its newly launched Bioengineering Degree Program (Master and PhD levels). This Program will bridge KAUST’s strengths in Engineering, Chemistry and Biology. In particular, it will integrate elements of electrical…

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Lecturer/Senior Lecturer in Bioinformatics and Computational Biology | University of New South Wales

Job Details Salary Lecturer – Level B, $111,563 to $131,517 per annum + 17% superannuation Senior Lecturer – Level C, $135,504 to $155,460 per annum + 17% superannuation Full time 5-year Convertible Tenure Track (CTT) Location: Kensington – Sydney, Australia The Opportunity Join the School of Computer Science and Engineering…

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Postdoctoral Associate in Bioinformatics, Genomics or AI/Machine Learning

Job Description:    We are seeking a post-doctoral associate in the Intelligent Comparative Oncology Lab directed by Dr. Jon Kim in the College of Veterinary Medicine at the University of Florida (UF). Kim lab focuses on developing novel diagnostic and clinical applications in the field of comparative oncology by utilizing…

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Postdoctoral Research Associate in Soil Viral Diversity job with UNIVERSITY OF SYDNEY

Full time 2 years fixed term (with a possible extension of 1 year) located on the Camperdown Campus, at Biomedical building at the School of Life and Environmental Sciences Opportunity to make valuable contributions to research in Soil Viral Diversity Base Salary Level A $97,043 p.a. –…

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A*STAR Research hiring #SGUnitedJobs Bioinformatics Specialist, Laboratory of Systems Biology & Data Analytics, GIS in Singapore, Singapore

The Genome Institute of Singapore (GIS) is an institute of the Agency for Science, Technology and Research (A*STAR). It has a global vision that seeks to use genomic sciences to achieve extraordinary improvements in human health and public prosperity. GIS is dedicated to creating a social culture that is focused…

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Postdoctoral Research Associate – Bioinformatics in Boston, MA for Northeastern University

Details Posted: 13-Jul-22 Location: Boston, Massachusetts Type: Full-time Salary: Open Postdoctoral Research Associate – Bioinformatics About the Opportunity We are seeking a creative scientist with a background in computational biology and microbiology to work on a genomics analysis-based antibiotic discovery project. The successful applicant will join a team of talented…

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Assistant Professor( Ladder Rank/In-Res) Ophthalmology Bioinformatics Research in La Jolla, CA for University of California San Diego

Details Posted: 13-Jul-22 Location: La Jolla, California Type: Full-time Salary: Open Categories: Academic/Faculty Healthcare Administration Assistant Professor( Ladder Rank/In-Res) Ophthalmology Bioinformatics Research University of California San Diego Application Window Open date: July 11th, 2022 Next review date: Sunday, Aug 14, 2022 at 11:59pm (Pacific Time)Apply by this date to ensure…

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Postdoctoral Research Associate – Bioinformatics job with Northeastern University

Postdoctoral Research Associate – Bioinformatics About the Opportunity We are seeking a creative scientist with a background in computational biology and microbiology to work on a genomics analysis-based antibiotic discovery project. The successful applicant will join a team of talented researchers at the Antimicrobial Discovery Center. Several drug lead candidates…

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Assistant/Associate Teaching Professor, Bioinformatics job with Northeastern University

Assistant/Associate Teaching Professor, Bioinformatics About the Opportunity The successful applicant will have the knowledge to develop and teach Bioinformatics courses at the Master’s level. The person in this position reports to the Director of the Biotechnology and Bioinformatics Programs. Responsibilities: Assistant /Associate Teaching Professor is sought to teach full time…

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(PDF) High-resolution mtDNA evidence for the late-glacial resettlement of Europe from an Iberian refugium | Ana Goios

(PDF) High-resolution mtDNA evidence for the late-glacial resettlement of Europe from an Iberian refugium | Ana Goios – Academia.edu Academia.edu no longer supports Internet Explorer. To browse Academia.edu and the wider internet faster and more securely, please take a few seconds to upgrade your browser. Log in with FacebookLog in with…

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Bioinformatics postdoc Position at Harvard Medical School

Our educational programs advance Harvard Medical School’s core mission to alleviate human suffering by nurturing a diverse group of leaders and future leaders in both clinical care and biomedical inquiry. These individuals are on the front lines of medicine and science serving individuals and populations locally, nationally, and globally. Post…

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PeerJ expertRxiv – Postdoctoral Associate in Bioinformatics

Job description Location: Boca Raton, Florida Job Description: The College of Medicine of Florida Atlantic University, the 5th public university in Florida, is seeking a Bioinformatics Postdoctoral Associate with experience in bioinformatics pipeline development and genomics data analysis for a Bioinformatics and Computational Genomics laboratory which focuses on high-throughput…

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Open Rank Bioinformatics Software Engineer I and Bioinformatics Engineer II in Baltimore, MD for University of Maryland, Baltimore

Open Rank Bioinformatics Software Engineer I and Bioinformatics Software Engineer II The Institute for Genome Sciences (IGS), Informatics Resource Center, is recruiting for a Open Rank Bioinformatics Software Engineer I and Bioinformatics Software Engineer II position. This position will be filled as either the Bioinformatics Software Engineer I or II.IGS…

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A*STAR RESEARCH ENTITIES hiring #SGUnitedJobs Bioinformatics Specialist, Laboratory of Computational Cancer Genomics, GIS in Singapore, Singapore

Why do cancer treatments work in some patients, but not in others? How can we use genomics data to discover new drug targets? We seek an energetic and team-oriented Data Scientist with expertise in software development (especially web-based data visualisation) to join a multi-disciplinary effort to discover new biomarkers and…

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Research Faculty- Department of Biostatistics and Bioinformatics in UNAVAILABLE, for Emory Healthcare

Details Posted: 24-Jun-22 Location: UNAVAILABLE, Salary: Open Categories: Physicians/Surgeons Discover Your Career at Emory University Emory University is a leading research university that fosters excellence and attracts world-class talent to innovate today and prepare leaders for the future. We welcome candidates who can contribute to the diversity and excellence of…

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(PDF) An eQTL biological data visualization challenge and approaches from the visualization community | Jan Aerts

(PDF) An eQTL biological data visualization challenge and approaches from the visualization community | Jan Aerts – Academia.edu Academia.edu uses cookies to personalize content, tailor ads and improve the user experience. By using our site, you agree to our collection of information through the use of cookies. To learn more,…

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Bioinformatics Programmer I – 115257

UCSD Layoff from Career Appointment: Apply by 04/04/2022 for consideration with preference for rehire. All layoff applicants should contact their Employment Advisor. Special Selection Applicants: Apply by 04/14/2022. Eligible Special Selection clients should contact their Disability Counselor for assistance. The Department of Medicine (DOM) is the largest department within the…

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Identification of the genetic elements involved in biofilm formation by Salmonella enterica serovar Tennessee using mini-Tn10 mutagenesis and DNA sequencing

doi: 10.1016/j.fm.2022.104043. Epub 2022 Apr 23. Affiliations Expand Affiliations 1 Department of Food Science and Technology, The University of Georgia, 1109 Experiment Street, Griffin, GA, 30223-1797, USA. 2 Department of Food Science and Technology, The University of Georgia, 1109 Experiment Street, Griffin, GA, 30223-1797, USA. Electronic address: jchen@uga.edu. Item in…

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Biotechnology Careers

Images for Biotechnology Careers Biotechnology Careers: In-Demand Jobs Shaping Our Future ICAR-NRCB Recruitment 2020 – BSc Microbiology & Biotechnology Job Govt RGCB Research Jobs – Biotechnology & Bioinformatics JRF Position Biotech Jobs | CT19 Biotechnology Job Outlook | A Career in High Demand 9 of the Best Biotechnology Careers For…

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RCSB PDB – 7SBA: Structure of type I-D Cascade bound to a dsDNA target

CRISPR-Cas systems are adaptive immune systems that protect prokaryotes from foreign nucleic acids, such as bacteriophages. Two of the most prevalent CRISPR-Cas systems include type I and type III. Interestingly, the type I-D interference proteins contain characteristic features of both type I and type III systems … CRISPR-Cas systems are…

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Allelic expression imbalance of PIK3CA mutations is frequent in breast cancer and prognostically significant

Subjects Normal breast and tumor samples were obtained with the written informed consent from donors and appropriate approval from local ethical committees, with the detailed information described in the respective original publications: normal tissue9, METABRIC14, TCGA35. Differential allelic expression analysis DNA and total RNA from 64 samples of normal breast…

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Bioconductor – sSNAPPY (development version)

DOI: 10.18129/B9.bioc.sSNAPPY     This is the development version of sSNAPPY; for the stable release version, see sSNAPPY. Single Sample directioNAl Pathway Perturbation analYsis Bioconductor version: Development (3.16) A single sample pathway pertrubation testing methods for RNA-seq data. The method propagate changes in gene expression down gene-set topologies to compute…

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Imaging Replicative Domains in Ultrastructurally Preserved Chromatin by Electron Tomography

This protocol presents a technique for high-resolution mapping of replication sites in structurally preserved chromatin in situ that employs a combination of pre-embedding EdU-streptavidin-Nanogold labeling and ChromEMT. We present a protocol for the electron microscopic visualization of the replicative domains in the cell by the EdU labeling of the newly…

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Allele-specific H3K9me3 and DNA methylation co-marked CpG-rich regions serve as potential imprinting control regions in pre-implantation embryo

. 2022 May;24(5):783-792. doi: 10.1038/s41556-022-00900-4. Epub 2022 Apr 28. Affiliations Expand Affiliations 1 Institute for Regenerative Medicine, Shanghai East Hospital, Shanghai Key Laboratory of Signaling and Disease Research, Frontier Science Center for Stem Cell Research, School of Life Sciences and Technology, Tongji University, Shanghai, China. 2 Shanghai Institute of Stem…

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Research Associate, Synthetic Biology job with NATIONAL UNIVERSITY OF SINGAPORE

Job Description The National University of Singapore invites applications for Research Associate position in the Synthetic Biology Translational Research Programme, Yong Loo Lin School of Medicine. Appointments will be on a 1-year contract in the first instance, with the possibility of extension. Fresh graduates are encouraged to apply. Purpose of…

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Neural Stem Cell Reactivation in Cultured Drosophila Brain Explants

A method to reactivate quiescent neural stem cells in cultured Drosophila brain explants has been established. Using this method, the role of systemic signals can be uncoupled from tissue-intrinsic signals in the regulation of neural stem cell quiescence, entry and exit. We developed a method to reactivate quiescent neural stem…

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Tempo and drivers of plant diversification in the European mountain system

Hughes, C. E. & Atchinson, G. W. The ubiquity of alpine plant radiations: from the Andes to the Hengduan Mountains. N. Phytol. 207, 275–282 (2015). Article  Google Scholar  Rahbek, C. et al. Humboldt’s enigma: what causes global patterns of mountain biodiversity? Science 365, 1108–1113 (2019). ADS  CAS  PubMed  Article  Google…

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RNAseq analysis of treatment-dependent signaling changes during inflammation in a mouse cutaneous wound healing model | Ian Toma

RNAseq analysis of treatment-dependent signaling changes during inflammation in a mouse cutaneous wound healing model | Ian Toma – Academia.edu Academia.edu uses cookies to personalize content, tailor ads and improve the user experience. By using our site, you agree to our collection of information through the use of cookies. To…

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Assistant Project Scientist, Bioinformatics in Los Angeles, CA for University of California Los Angeles

Details Posted: 15-May-22 Location: Los Angeles, California Type: Full-time Salary: Open Categories: Academic/Faculty Physical Sciences Assistant Project Scientist, BioinformaticsUniversity of California Los Angeles Requisition Number: JPF07378 The Department of Molecular and Medical Pharmacology is recruiting for a bioinformatics Project Scientist at the Assistant level. The candidate will investigate the human…

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MND1 Expression as a Predictor of Breast Cancer Survival

Introduction Breast cancer (BC) is the most commonly diagnosed cancer in women, and it is the main cause of cancer mortality in women around the world.1 Although standard treatments for breast cancer, including surgery, radiotherapy, chemotherapy, endocrine therapy, targeted therapy, and immunotherapy, have greatly improved during the last few decades.2,3…

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Genetic and chemotherapeutic influences on germline hypermutation

DNM filtering in 100,000 Genomes Project We analysed DNMs called in 13,949 parent–offspring trios from 12,609 families from the rare disease programme of the 100,000 Genomes Project. The rare disease cohort includes individuals with a wide array of diseases, including neurodevelopmental disorders, cardiovascular disorders, renal and urinary tract disorders, ophthalmological…

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Mulugeta Metaferia – Academia.edu

Mulugeta Metaferia – Academia.edu Academia.edu no longer supports Internet Explorer. To browse Academia.edu and the wider internet faster and more securely, please take a few seconds to upgrade your browser. Academia.edu uses cookies to personalize content, tailor ads and improve the user experience. By using our site, you agree to our…

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(PDF) Intraspecific variability (rDNA ITS and mtDNA Cyt b) of Phlebotomus sergenti in Spain and Morocco | Montserrat Gallego

(PDF) Intraspecific variability (rDNA ITS and mtDNA Cyt b) of Phlebotomus sergenti in Spain and Morocco | Montserrat Gallego – Academia.edu Academia.edu uses cookies to personalize content, tailor ads and improve the user experience. By using our site, you agree to our collection of information through the use of cookies….

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Assistant Professor of Bioinformatics in Charlotte, NC for The University of North Carolina at Charlotte

Details Posted: 07-May-22 Location: Charlotte, North Carolina Salary: Open Categories: Academic/Faculty Medical – Research Position Number: 003980 Department: Coll of Computing&Informatics (Col) Employment Type: Permanent – Full-time Months Per Year: 9 Essential Duties and Responsibilities: The successful candidate will mentor and teach at both the undergraduate and graduate levels.  This…

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A*STAR – Agency for Science, Technology and Research hiring Bioinformatics Specialis, Laboratory of Systems Biology & Data Analytics, GIS in Singapore, Singapore

 The Genome Institute of Singapore (GIS) is an institute of the Agency for Science, Technology and Research (A*STAR). It has a global vision that seeks to use genomic sciences to achieve extraordinary improvements in human health and public prosperity. GIS is dedicated to creating a social culture that is…

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Director, Institute of Bioinformatics-UGA FACULTY INTERNAL SEARCH – Athens

*Posting Number:*F0672P*Working Title:*Director, Institute of Bioinformatics-UGA FACULTY INTERNAL SEARCH*Department:*VPR-Inst of Bioinformatics*About the University of Georgia:*The University of Georgia (UGA), a land-grant and sea-grant university with statewide commitments and responsibilities, is the state’s oldest, most comprehensive, and most diversified institution of higher education ([www.uga.edu/%5D(www.uga.edu/)). UGA is currently ranked among the top…

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nf-core presentation – HackMD

<!– .slide: data-background=”raw.githubusercontent.com/maxulysse/maxulysse.github.io/main/assets/img/svg/green_white_bg.svg&#8221; –> <a href=”nf-co.re”><img src=”raw.githubusercontent.com/nf-core/logos/master/nf-core-logos/nf-core-logo-darkbg.svg&#8221; width=”60%”></img></a> # What is nf-core\? [Maxime U Garcia](https://maxulysse.github.io/) ▸ [<i class=”fa fa-twitter” aria-hidden=”true”></i>@gau](https://twitter.com/gau/) | [<i class=”fa fa-github” aria-hidden=”true”></i>@maxulysse](https://github.com/maxulysse/) [Karolinska Institutet](https://ki.se/) | [Science for Life Laboratory](https://www.scilifelab.se/) Sweden — ## Overview – 🗄️ [Barntumörbanken](https://ki.se/forskning/barntumorbanken/) – 🧬 [NGI](https://ngisweden.scilifelab.se/) – 🍬 [Nextflow](https://www.nextflow.io/) – 🧙 [nf-core](https://nf-co.re/) — ##…

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Multiplexed genome regulation in vivo with hyper-efficient Cas12a

. 2022 Apr;24(4):590-600. doi: 10.1038/s41556-022-00870-7. Epub 2022 Apr 12. Lucie Y Guo #  1   2 , Jing Bian #  3 , Alexander E Davis  4 , Pingting Liu  4 , Hannah R Kempton  3 , Xiaowei Zhang  3 , Augustine Chemparathy  3 , Baokun Gu  3 , Xueqiu Lin  3 , Draven A Rane  3 , Xiaoshu Xu  3 , Ryan M…

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Director of Bioinformatics in Chicago, IL for University of Chicago (UC)

Details Posted: 03-May-22 Location: Chicago, Illinois Type: Full-time Salary: Open Categories: Research – Laboratory/Non-Laboratory Staff/Administrative Location: Hyde Park Campus Job Description: Provides technical expertise in the selection, validation, and implementation of the appropriate internal and external data analytic and bioinformatic solutions needed to analyze specimens, process and integrate data, and…

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Programmer or Software Developer in Bioinformatics

Job:Programmer or Software Developer in Bioinformatics 0 Dr. Vikas Bansal’s research group (bansal-lab.github.io) in the School of Medicine at the University of California San Diego is looking for a programmer or software developer to advance the development of computational tools and methods for human genome analysis. Research in the group…

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Bioinformatics Specialist at The University of Chicago in Chicago, IL – 4091

Job Info Department BSD PED – Section Administrator: Hematology, Oncology, and Stem Cell Transplantation About the Department The Section of Pediatric Hematology/Oncology provides care for patients and families with acute and chronic medical conditions, or other hematologic diseases, requiring the specialty knowledge and skills of Hematology, Oncology and Stem Cell…

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Frontiers | COMMD2 Upregulation Mediated by an ncRNA Axis Correlates With an Unfavorable Prognosis and Tumor Immune Infiltration in Liver Hepatocellular Carcinoma

Introduction Liver hepatocellular carcinoma (LIHC) is the most common type of primary cancer in the liver and third leading cause of cancer-related mortality worldwide (1). Although substantial improvements have been made in LIHC therapy, particularly in molecular targeted therapy and immunotherapy (2, 3), the 5-year survival rate of LIHC is…

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On a reference pan-genome model (Part II)

12 July 2019 I wrote a blog post on a potential reference pan-genome model. I had more thoughts in my mind. I didn’t write about them because they are immature. Nonetheless, a few readers raised questions related to my immature thoughts, so I decide to add this “Part II” as…

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Postdoc Fellow on Cancer Genomics, Epigenetics, Metabolism, and Bioinformatics

Multiple postdoctoral positions are available in the lab of Dr. Jian Xu at Children’s Research Institute (CRI), UT Southwestern Medical Center to study the gene regulatory processes that control stem cell development and cancers. We employ genomics, epigenetics, genome editing, metabolomics, and mouse genetics to define disease-associated epigenetic and genetic programs…

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The Fifth Annual YCC Trainee Colloquium

Yale Cancer Center (YCC) will hold its Fifth Annual Trainee Colloquium virtually on Friday, June 10, 2022 from 8:30am – 1:15pm. This will be a forum for Yale trainees to highlight their research, exchange ideas, and initiate collaborations. We invite predoctoral MD, PhD, MD-PhD students, postdoctoral associates, postdoctoral fellows, residents,…

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Post-Doctoral Associate in the Center for Genomics and Systems Biology job with NEW YORK UNIVERSITY ABU DHABI

Description The Center for Genomics and Systems Biology (CGSB) at New York University Abu Dhabi (NYUAD) invites applications from individuals to be appointed as a Postdoctoral Associate. The position will be based at NYU Abu Dhabi and supervised by Dr. Kirsten Sadler Edepli. The Postdoctoral Associate will use bioinformatics tools…

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Transcription Start Site

Transcription Start Site 2 What are the best databases to check out the transcription start sites of specific genes in human genome? TSS • 130 views wget -q -O – “http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/wgEncodeGencodeBasicV19.txt.gz” | gunzip -c | awk ‘(int($7)< int($8)) {if($4==”+”) {printf(“%s\t%d\t%d\t%s\t%s\n”,$3,$7,int($7)+1,$2,$4);}else {printf(“%s\t%d\t%d\t%s\t%s\n”,$3,int($8)-3,$8,$2,$4);}}’ chr1 69090 69091 ENST00000335137.3 + chr1 139306 139309 ENST00000423372.3…

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Bioconductor – AHEnsDbs

DOI: 10.18129/B9.bioc.AHEnsDbs     This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see AHEnsDbs. EnsDbs for AnnotationHub Bioconductor version: 3.10 Supplies AnnotationHub with EnsDb Ensembl-based annotation databases for all species. EnsDb SQLite databases are generated separately from Ensembl MySQL databases using functions from the…

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Ubuntu Manpage: Bio::Tools::Seg – parse “seg” output

Provided by: libbio-perl-perl_1.7.2-2_all NAME Bio::Tools::Seg – parse “seg” output SYNOPSIS use Bio::Tools::Seg; my $parser = Bio::Tools::Seg->(-file => ‘seg.fasta’); while ( my $f = $parser->next_result ) { if ($f->score < 1.5) { print $f->location->to_FTstring, ” is low complexity\n”; } } DESCRIPTION “seg” identifies low-complexity regions on a protein sequence. It is…

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Bioconductor – bladderbatch

DOI: 10.18129/B9.bioc.bladderbatch     This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see bladderbatch. Bladder gene expression data illustrating batch effects Bioconductor version: 3.12 This package contains microarray gene expression data on 57 bladder samples from 5 batches. The data are used as an…

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Postdoc / Research Scientist in Bioinformatics and Computational Genomics

Job Description Are you a computer geek with a strong interest in genomics? Do you want to use your computational skills to solve human diseases? At the Department of Neurology at Harvard Medical School and Brigham & Women’s Hospital, we have two vacant positions: postdoctoral fellow and research scientist in…

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Bioinformatics Scientist for Whole Genome and Whole Exome Sequencing

** Bioinformatics Scientist for Whole Genome and Whole Exome Sequencing ** The NeuroGenomics and Informatics (NGI) Center lead by Dr. Carlos Cruchaga at Washington University School of Medicine is recruiting a Bioinformatics Scientist to work on Whole Genome and Whole Exome Sequencing. We are seeking an experienced, self-motivated, self-driven scientist…

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Manager of Bioinformatics in Chicago, IL for University of Chicago (UC)

Details Posted: 22-Apr-22 Location: Chicago, Illinois Type: Full-time Salary: Open Categories: Research – Laboratory/Non-Laboratory Staff/Administrative Location: Hyde Park Campus Job Description: Leads a team of bioinformaticians and provides technical guidance for the team to follow best practices and deliver data production timely. Collaborates cross-functionally with our user services, software engineering,…

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Bioinformatics Salary Entry Level at Level

Bioinformatics Salary Entry Level. Similar to any other job, their salary will increase as they gain experience. What is the average salary of a bioinformatics scientist? Senior Software Engineer from www.dreamjobs.lk $31,220 to $37,970 per year. The estimated base pay is $109,228 per year….

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