Tag: EMBL

Ants of French Guiana: 16S rRNA sequence dataset

doi: 10.3897/BDJ.11.e91577. eCollection 2023. Affiliations Expand Affiliations 1 UMR Écologie des Forêts de Guyane (AgroParisTech, CIRAD, CNRS, INRAE, Université de Guyane, Université des Antilles), Kourou, French Guiana UMR Écologie des Forêts de Guyane (AgroParisTech, CIRAD, CNRS, INRAE, Université de Guyane, Université des Antilles) Kourou French Guiana. 2 Laboratoire Evolution et…

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Ubuntu Manpage: gt-encseq-encode – Encode sequence files (FASTA/FASTQ, GenBank, EMBL) efficiently.

Provided by: genometools_1.6.5+ds-2_amd64 NAME gt-encseq-encode – Encode sequence files (FASTA/FASTQ, GenBank, EMBL) efficiently. SYNOPSIS gt encseq encode sequence_file [sequence_file [sequence_file …]] DESCRIPTION -showstats [yes|no] show compression results (default: no) -ssp [yes|no] output sequence separator positions to file (default: yes) -des [yes|no] output sequence descriptions to file (default: yes) -sds [yes|no]…

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Researcher/Postdoc to enhance computational resources for regulatory genomics with deep learning

Description: The Computational Biology & Gene Regulation group led by Anthony Mathelier at the NCMM, a part of the Nordic EMBL Partnership for Molecular Medicine, is seeking a highly motivated Researcher or Postdoctoral Fellow for a two-year position, starting as soon as possible in 2024. The selected candidate will play…

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Doctoral Researchers in Molecular Medicine and Life Sciences job with UNIVERSITY OF HELSINKI

As part of the Nordic EMBL Partnership for Molecular Medicine, the Institute for Molecular Medicine Finland (FIMM) invites applications for the positions of Doctoral Researchers in Molecular Medicine and Life Sciences We currently have 2-4 openings for doctoral researchers as part of the FIMM-EMBL international PhD programme starting in August 2024. In this interdisciplinary…

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Life Science Project Manager jobs in East of England | Fixed term

Broaden your search Refine your search Sign up for job alerts Get new jobs for this search by email Found 2 Fixed term jobs About the team/job We are seeking to recruit a part-time (ideally…

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[ccp4bb] Several Positions available at EMBL Grenoble

Dear All, We have several job openings at EMBL Grenoble */Full-Stack Developer / * www.embl.org/jobs/position/GR00219 */Research Technician/* www.embl.org/jobs/position/GR00220 /*Structural Biology Data Platform Developer*/ www.embl.org/jobs/position/GR00221 <www.embl.org/jobs/position/GR00221&gt; Best wishes — _________________________________________________________ Jose A. Marquez, Senior Scientist Head of the Crystallization Facility European Molecular Biology Laboratory, Grenoble. Delivery address: EMBL, 71, Avenue des…

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PA in Director’s Office – EMBL-EBI

PA in Director’s Office EMBL-EBI – European Bioinformatics Institute Hinxton, United Kingdom Organisation data: Directors OfficeJob Number: EBI02200Contract Type: Staff MemberAdvertised Grade-Grading: Grade 5 – 6 (depending on experience) Monthly salary from £3,090 – £3,456 after tax – other benefits based on family circumstancesContract Duration-Length of Time (years/months): 3 years…

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Software Developer (m/w/d), Austria – SaluteMyJob

EMBO is a not-for-profit organization that promotes excellence in life sciences in Europe and beyond. We fund talented researchers at all stages of their careers, stimulate scientific exchanges through high-quality academic publishing, conferences and lectures, and help build a research environment where scientists can achieve their best work. Our international…

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Blazing the trail to empower agrigenomics research and conservation

Sequencing data for a single human genome, at 30× coverage, takes up to 70 gigabytes of storage. Illumina instruments produced 280 million gigabytes of data in 2021 alone, and by 2025, we’ll need storage capacity for 40 billion gigabytes—and that’s just for human genomes. The Genomics & Bioinformatics Service of…

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European Bioinformatics Institute | EMBL-EBI hiring PA in Director’s Office in Hinxton, England, United Kingdom

Join our dynamic team as a Personal Assistant, providing top-notch administrative and organisational support within the EMBL-EBI Directors’ Office to the EMBL-EBI Joint Director; the Hinxton-based EMBL Head of Human Resources; and the Hinxton-based EMBL Head of Strategy. If you’re an experienced and proactive Personal Assistant, excited to contribute to…

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Senior Programme Manager – EMBL-EBI

Senior Programme Manager EMBL-EBI – European Bioinformatics Institute Hinxton, United Kingdom Organisation data: Directors OfficeJob Number: EBI02202Contract Type: Staff MemberContract Duration-Length of Time (years/months): 3 years (renewable to a maximum of 9 years)Advertised Grade-Grading: Grade 8 – monthly salary from £4,513.65 after tax plus benefitsClosing date: 22 January 2024 About…

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Probing the conformational changes of in vivo overexpressed cell cycle regulator 6S ncRNA

join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Probing the conformational changes of in vivo overexpressed cell cycle regulator 6S ncRNA Makraki, E. ; Miliara, S. ; Pagkalos, M. ; Kokkinidis, M. ; Mylonas, E. (Corresponding author)Extern*EMBL* ; Fadouloglou, V. E. (Corresponding author)Extern*EMBL* 2023Frontiers Lausanne This record in other databases:   Please use a persistent id in citations: doi:10.3389/fmolb.2023.1219668  doi:10.3204/PUBDB-2023-07967 Abstract: The…

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‘X-ray vision’ for investigation of mRNA nanomedicines

EMBL Staff Scientist Melissa Graewert together with two users from the Johannes Gutenberg University Mainz are performing measurements of RNA using small-angle X-ray scattering at the EMBL beamline P12 in Hamburg. Credit: Dorota Badowska/EMBL A new technology co-developed at EMBL Hamburg provides new insights into mRNA pharmaceuticals and other nanomedicines,…

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List of Artificial Intelligence Models for Medical Landscape (2023)

Given the number of advancements artificial intelligence (AI) has made this year itself, it’s no surprise that it has been a significant point of discussion throughout 2023. AI now finds its use case in almost every realm, and one of its exciting and useful applications is in healthcare and medicine….

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Bioinformatics Unravelling the Intricate Thread of Biological Information Fabric

Bioinformatics is an interdisciplinary field that develops methods and software tools for understanding biological data, especially genetic data. With the advances in biotechnology and sequencing technologies, a huge amount of biological and genetic data is being generated each day which needs to be analyzed using computational techniques. This is where…

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EMBL-EBI / French Embassy Internships

About the program This prestigious program in an international laboratory is a unique opportunity to explore new frontiers in biomedical, biotech, agri-food, marine, and biodiversity research. It illustrates the collaboration of EMBL’s European Bioinformatics Institute (EMBL-EBI) and the French Embassy’s Department for Higher Education, Research and Innovation to promote the…

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Q&A Report from the workshop_ _Exploring EMBL-EBI sequence analysis tools and managing bioinformatics workflows | PDF | Sequence Alignment

  Q&A Report from the workshop: QuestonWha is he bes msa ool?clusal 2 and clusal omega are he sameHow would we ener multple sequences? because here is only one inpu boxCould he legend explaining symbiols (*, -,…) be shown in he resul window?Wha is he max number of sequences one…

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File:FAM86B1 540px.gif – Wikipedia

Summary DescriptionFAM86B1 540px.gif English: Protein structure of human FAM86B1 isoform 1 predicted by AlphaFold. Colored by secondary structure, with alpha helices in red and beta strands in yellow. The SKL2 peroxisomal targeting signal is shown in green. Remaining coils are blue. gif shows FAM86B1 slowly spinning, so that the full…

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McWilliam H, Li W, Uludag M (2013). Analysis Tool Web Services from the EMBL-EBI” Nucleic acids research: 41(Web Server issue): W597-600.

1Institute of Endemic Diseases, University of Khartoum, Khartoum, Sudan 2Department of microbiology, Faculty of medicine, university of Khartoum, Sudan 3Head department of biotechnology, Biotechnology Park, Africa city of technology, Sudan 4Botany department, Faculty of Science, University of Khartoum, Sudan American Journal of Microbiological Research. 2014, Vol. 2 No. 6, 217-223DOI:…

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Global BioImaging – Scientific Manager “Imaging for All – i4A” job with European Molecular Biology Laboratory (EMBL)

About the team/job The Global BioImaging team at the Euro-BioImaging Bio-Hub hosted by the EMBL is seeking a highly motivated international scientific management and imaging professional to launch and coordinate the new “Imaging 4 All – i4A” project under the Global BioImaging network (www.globalbioimaging.org). Global BioImaging (GBI) is a growing…

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Single Cell Data Scientist at European Molecular Biology Laboratory (EMBL)

About the team/job We are looking for a Bioinformatician to join the Open Targets data team. We are seeking an enthusiastic team member to expand our informatics platforms through the integration of single cell omics data to enhance drug discovery. This role would suit someone with experience in data integration…

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ELIXIR Senior Project Manager – EMBL-EBI

ELIXIR Senior Project Manager EMBL-EBI – European Bioinformatics Institute Hinxton, United Kingdom Organisation data: ELIXIR Project Management UnitJob Number: EX00062Contract Type: Staff MemberSchedule Type: Full Time/Part TimeAdvertised Grade-Grading: Grade 6 (monthly salary from £3,456.96 after tax + benefits)Contract Duration-Length of Time (years/months): 3 yearsClosing date: 1 January 2024 About the…

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Data Science Community & Internal Support Lead

Your role You will provide project leadership and coordination to shape data science-related internal support activities and training programs, spanning programming, consulting in complex data analysis, and specialised courses. Engaging with both the scientific community at EMBL and external representatives, your work will enhance training and consulting offerings across EMBL…

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Mint Explainer: The implications of AI creating new materials in seconds

For instance, computational approaches led by the Materials Project and other groups have helped develop 28,000 new materials till date. But this is an expensive and time-consuming process, and researchers may find it difficult to develop radically different structures since they mostly work with existing materials. Recently, though, Google unit…

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European Bioinformatics Institute | EMBL-EBI hiring Machine Learning Data Scientist in Hinxton, England, United Kingdom

Open Targets (OT) is a unique public-private partnership working to deliver experimental data and informatics platforms that enable researchers to make more informed decisions about target selection for drug discovery. OT is a shared initiative between the European Bioinformatics Institute (EMBL-EBI), a global leader in the management, integration and analysis…

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Support Specialist for Deicpher Project – EMBL-EBI

Support Specialist for Deicpher Project EMBL-EBI – European Bioinformatics Institute Hinxton, United Kingdom Organisation data: Genome Assembly & AnnotationJob Number: EBI02203Contract Type: Staff MemberContract Duration-Is this renewable to 9 years?: if suficient funds renewedContract Duration-Length of Time (years/months): 2 years (Project based contract until May 2026)Advertised Grade-Grading: Grade 5 monthly…

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Harlow’s Kao Data form partnership with technology agency

KAO DATA, the specialist developer and operator of data centres engineered for AI and advanced computing, has formed a new commercial partnership with Jisc, the UK’s digital, data and technology agency focused on tertiary education, research and innovation.  As part of a new data centre referral agreement, Jisc has chosen…

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Metagenomic species profiling using universal phylogenetic marker genes

Standard Metagenomic species profiling using universal phylogenetic marker genes. / Sunagawa, Shinichi; Mende, Daniel R.; Zeller, Georg; Izquierdo-Carrasco, Fernando; Berger, Simon A.; Kultima, Jens Roat; Coelho, Luis Pedro; Arumugam, Manimozhiyan; Tap, Julien; Nielsen, Henrik Bjørn; Rasmussen, Simon; Brunak, Søren; Pedersen, Oluf Borbye; Guarner, Francisco; de Vos, Willem M; Wang, Jun;…

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Phenotypic profiling of solute carriers characterizes serine transport in cancer

Cell culture All cell lines used in this study were cultured at 37 °C in 5% CO2 in a humidified incubator. Human cell lines were authenticated by STR profiling using Promega GenePrint 10 and tested for Mycoplasma using Mycoalert (Lonza). Other than HCT116 p21−/− (a gift of B. Vogelstein60) all cell…

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EIPOD-LinC Fellowship Programme, Interdisciplinary Postdoc

EIPOD-LinC Fellowship Programme: Embark on a transformative journey with the EIPOD-LinC Fellowship Programme, a postdoctoral fellowship initiative fostering interdisciplinary research. This programme, hosted by the European Molecular Biology Laboratory (EMBL), supports researchers worldwide, providing mentorship, training, and career development to cultivate leaders in academia, industry, and beyond. Dive into our…

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Strategy Officer at European Molecular Biology Laboratory (EMBL)

About the team/job EMBL is Europe’s life sciences laboratory – an intergovernmental organisation with more than 110 independent research groups and service teams covering the spectrum of molecular biology. It operates across six sites in Heidelberg (headquarters), Barcelona, Cambridge, Grenoble, Hamburg and Rome. Our mission is to perform basic research…

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December 2023: Added AlphaFold linked proteins to select organisms

We created tracks with Alphafold-linked proteins for selected genome browsers allowing for links to predicted 3D structures. Publication: Jumper et al. Nature (2021) – “The AlphaFold Protein Structure Database is available through EMBL-EBI” In those select browsers, you will find the following protein track: The following organisms contain protein tracks…

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The Next Generation of Protein Folding Prediction:Alphafold 3 | by Shibil | Dec, 2023

In late 2023, DeepMind unveiled the latest iteration of its revolutionary protein structure prediction system, AlphaFold. Dubbed “AlphaFold 3”, this new version represents a major leap forward, with the ability to predict structures not just for proteins, but for other crucial biological molecules with unparalleled accuracy. The Origins of AlphaFold…

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EMBO announces new Young Investigators

5 December 2023 – 26 scientists have been selected to join the EMBO Young Investigator Programme, an initiative that supports excellent young group leaders in the early stages of their independent careers. Starting in January 2024, the new EMBO Young Investigators will receive a wide range of financial and practical support….

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Research Assistant Full time jobs in France | Fixed term

Broaden your search Refine your search Sign up for job alerts Get new jobs for this search by email Found 2 Fixed term jobs About the team/job The European Molecular Biology Laboratory (EMBL) is a…

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Operations Manager – Data Science Centre at European Molecular Biology

About the team/job:EMBL is a leading life sciences laboratory in Europe, comprised of over 110 independent research groups and service teams focused on molecular biology. It operates across six sites and is dedicated to performing basic research, providing training and services, developing new methods, and actively engaging in technology transfer….

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EMBL-EBI Training | Introduction to RNA-seq and functional interpretation

Gain an introduction to the technology, data analysis, tools, and resources used in RNA sequencing and transcriptomics. The content will provide a broad overview of the subject area, and introduce participants to basic analysis of transcriptomics data using the command line. It will also highlight critical public data repositories and…

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the future of disease treatment

Like many people I know, I am badly undereducated in biology. Whatever I was taught in high school was instantly forgotten when I left, and I never got near it again. Except that it is in our faces daily — diet, health, diseases, cures — we are all bouncing against…

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Digital Content Editor – EMBL-EBI

Digital Content Editor – EMBL-EBI – European Bioinformatics Institute, Hinxton Digital Content Editor EMBL-EBI – European Bioinformatics Institute Hinxton, United Kingdom We are looking for a talented Digital Content Editor to join the ELIXIR Hub. In this role you will write and edit text for the main ELIXIR website as…

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The Global Biodiversity Data Portal: enabling

image:  The Global Biodiversity Data Portal: enabling biodiversity research worldwide   view more  Credit: Karen Arnott/EMBL-EBI EMBL’s European Bioinformatics Institute (EMBL-EBI) has launched the Global Biodiversity Portal – an open access data portal that will consolidate genomic information from different biodiversity projects within the Earth BioGenome Project.  Sequencing and storing…

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Which program, tool, or strategy do you use to visualize genomic rearrangements?

Which program, tool, or strategy do you use to visualize genomic rearrangements? 5 Which program, tool, or strategy do you use to visualize genomic rearrangements? In relation to my master thesis I’m working on tools to visualize fusion genes. In that regard I’m interested in any and all strategies and…

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The Global Biodiversity Portal: enabling biodiversity research worldwide

The new initiative brings together genomic data from various biodiversity projects to aid conservation and biodiversity efforts The Global Biodiversity Data Portal. Credit: Karen Arnott/EMBL-EBI Summary The Global Biodiversity Portal is a centralised open-access database that consolidates genomic information collected from projects that make up the Earth BioGenome Project,…

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Two mitochondrial HMG-box proteins, Cim1 and Abf2, antagonistically regulate mtDNA copy number in Saccharomyces cerevisiae | Nucleic Acids Research

Abstract The mitochondrial genome, mtDNA, is present in multiple copies in cells and encodes essential subunits of oxidative phosphorylation complexes. mtDNA levels have to change in response to metabolic demands and copy number alterations are implicated in various diseases. The mitochondrial HMG-box proteins Abf2 in yeast and TFAM in mammals…

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ELIXIR Digital Content Editor job with European Molecular Biology Laboratory (EMBL)

About the team/job We are looking for a talented Digital Content Editor to join the ELIXIR Hub, which coordinates ELIXIR, the European data infrastructure for life science. In this role you will write and edit text for the main ELIXIR website (elixir-europe.org) as well as smaller project websites like the…

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Software Developer – Backend at European Molecular Biology Laboratory (EMBL)

About the team/job We are looking for an enthusiastic and driven Backend Software Developer to join Open Targets at EMBL-EBI. We are open to applicants at different career stages, but we are keen to find someone who wants to embrace cutting-edge technologies in order to tackle complex challenges in drug…

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Computational and bioinformatics tools for life sciences

In recent decades, the development of computational and bioinformatics tools and websites for life sciences has increased exponentially. This great development has gone hand in hand with the availability of genome, proteome and macromolecule structure databases, and also of functional experiments, including microarray and RNAseq expression data, RNA-protein interactions, ChIP-seq,…

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EMBL’s European Bioinformatics Institute (EMBL-EBI) in 2023 | Nucleic Acids Research

Abstract The European Molecular Biology Laboratory’s European Bioinformatics Institute (EMBL-EBI) is one of the world’s leading sources of public biomolecular data. Based at the Wellcome Genome Campus in Hinxton, UK, EMBL-EBI is one of six sites of the European Molecular Biology Laboratory (EMBL), Europe’s only intergovernmental life sciences organisation. This…

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Scientific collaboration paves the way to cleaner technologies for industry

Interdisciplinarity and an exchange of innovative ideas allowed researchers to gain insights into the structure and function of a heat-resistant enzyme found in an exotic microbe living in extreme conditions. Credit: Isabel Romero Calvo/EMBL During the nearly five decades of its operation, the European Molecular Biology Laboratory (EMBL) in Hamburg…

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hg38 RepeatMasker v4.0.7 Dfam_2.0 question

Dear UCSC Genome Browser Support Team:   I hope this message finds you well.   I am writing to you as a postdoctoral researcher from Dr. Xianjun Dong’s Lab at Harvard Medical School. Firstly, I would like to extend my heartfelt gratitude for your significant efforts in developing the human…

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Ancient diversity in host-parasite interaction genes in a model parasitic nematode

Van Valen, L. A new evolutionary law. Evol. Theory 1, 1–30 (1973). Google Scholar  Woolhouse, M. E. J., Webster, J. P., Domingo, E., Charlesworth, B. & Levin, B. R. Biological and biomedical implications of the co-evolution of pathogens and their hosts. Nat. Genet. 32, 569–577 (2002). Article  CAS  PubMed  Google…

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Researcher Full time jobs in France | Fixed term, PhD, Academia

Broaden your search Refine your search Sign up for job alerts Get new jobs for this search by email Found 1 Fixed term, PhD, Academia job About the team/job We are looking for a Research…

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Tools for Efficient Retrieval from GEO and SRA Databases | by Denis Odinokov, MBBS, MSc, PMP | Nov, 2023

Image by Gerd Altmann from Pixabay For downloading data and standardized metadata from GEO (Gene Expression Omnibus) and SRA (Sequence Read Archive), several bioinformatics and command-line tools and scripts are available, primarily hosted on GitHub. ARA: An automated pipeline developed for better sampling of NCBI SRA database records, allowing full…

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EMBO Workshop: Computational structural biology

This conference will take place at EMBL Heidelberg, with the option to attend virtually. www.embl.org/about/info/course-and-conference-office/events/csb23-01/  Conference overview The field of computational structural biology is undergoing a revolution. AlphaFold, a program based on Artificial Intelligence (AI), has transformed the structural modeling of proteins and protein complexes by reaching accuracy similar to…

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Remote Senior Site Reliability Engineer – Saffron Walden, Essex, United Kingdom – EMBL-EBI Careers

Description As we navigate a period of transformation, our Operations Team is excited to announce a significant expansion. Currently, we comprise a dynamic group of 9 colleagues, spanning a spectrum of experience from Java developers to Site Reliability Engineers (SREs). Our team, previously known as Software Development & Operations and…

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Role of gut microbes in cancer therapy

Stock image Medical researchers have confirmed the role of a complex community of gut organisms in the effectiveness of cancer treatments and reducing toxicity. The comprehensive review of evidence from more than 200 publications was conducted by SAHMRI and Flinders University research led by Professor David Lynn and Dr Stephen…

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Head of Campus Operations – EMBL-EBI

Head of Campus Operations EMBL-EBI – European Bioinformatics Institute Hinxton, United Kingdom Organisation data: AdministrationJob Number: EBI02194Contract Type: Staff MemberAdvertised Grade-Grading: Grade 10 (monthly salary from £6,915.59 after tax plus benefits)Contract Duration-Is this renewable to 9 years?: YesClosing date: 03 December 2023 About the team/job The European Molecular Biology Laboratory…

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2023 EMBL Interdisciplinary Postdocs Fellowships-Exploring Life In Context: call for applications job with European Molecular Biology Laboratory (EMBL)

About the team/job The European Molecular Biology Laboratory (EMBL) is one of the top life sciences research institutions in the world with sites in Grenoble, France; Heidelberg and Hamburg, Germany; Hinxton, UK; Rome, Italy; and Barcelona, Spain. The institute hosts an interdisciplinary Postdoctoral fellowship programme: the EMBL Interdisciplinary Postdoc programme…

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Software Developer job with European Molecular Biology Laboratory (EMBL)

About the team/job EMBO is a not-for-profit organization that promotes excellence in life sciences in Europe and beyond. We fund talented researchers at all stages of their careers, stimulate scientific exchanges through high-quality academic publishing, conferences and lectures, and help build a research environment where scientists can achieve their best…

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European Bioinformatics Institute | EMBL-EBI hiring Head of Campus Operations in Hinxton, England, United Kingdom

The European Molecular Biology Laboratory (EMBL), is a non-profit, Intergovernmental Organisation funded by 27 EMBL member states and 2 associate member states. EMBL has over 2,000 members of personnel from over 80 nations based across its six sites: Heidelberg (Germany), Hinxton near Cambridge (UK), Grenoble (France), Hamburg (Germany), Rome (Italy)…

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DESY, Fraunhofer, Hereon and EMBL increase co-operation

Research institutes driving technological performance and competitiveness – Memorandum of Understanding signed The German Electron Synchrotron (DESY),  the Fraunhofer-Gesellschaft, the Helmholtz Center Hereon and the European Molecular Biology Laboratory (EMBL) signed Monday (November 13, 2023) a Memorandum of Understanding on a new strategic partnership. The four institutes are pooling their…

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European Bioinformatics Institute | EMBL-EBI hiring Full Stack Engineer in Hinxton, England, United Kingdom

We are looking for a Software Developer to join the European Variation Archive (EVA – www.ebi.ac.uk/eva/) team. The EVA is a cutting-edge genetic data repository that plays a pivotal role in the field of genomics. The EVA hosts billions of variants across hundreds of species and is expected to grow…

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REMBI Lab Guide < BioImage Archive < EMBL-EBI

The aim of this guide is to help you prepare in advance to submit your data to the BioImage Archive. In particular, it provides an overview of what data you should submit, as well as the information you’ll need to provide with your images so that you can think about…

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Shotgun metagenomes from productive lakes in an urban region of Sweden

Williamson, C. E., Saros, J. E., Vincent, W. F. & Smol, J. P. Lakes and reservoirs as sentinels, integrators, and regulators of climate change. Limnology and Oceanography 54, 2273–2282, doi.org/10.4319/lo.2009.54.6_part_2.2273 (2009). Article  ADS  Google Scholar  Cavicchioli, R. et al. 2019. Scientists’ warning to humanity: microorganisms and climate change. Nature Reviews…

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Full Stack Developer – European Variation Archive Team at European Molecular Biology Laboratory (EMBL)

About the team/job The European Bioinformatics Institute (EMBL-EBI) is seeking a Software Developer to join the European Variation Archive (EVA – www.ebi.ac.uk/eva/) team. The EVA is a cutting-edge genetic data repository that plays a pivotal role in the field of genomics. The EVA hosts billions of variants across hundreds of…

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BioImage Archive Search Engineer at European Molecular Biology Laboratory (EMBL)

About the team/job We are searching for a talented individual to work on systems to enable better search and discoverability of life sciences images and their annotations. The role will suit a creative, innovative person who enjoys being part of a high performing team working on critical scientific infrastructure. The…

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Awards and honours (Issue 101)

The work and excellence of EMBL researchers have been recognised with multiple awards and honours during the past six months. Three EMBL predocs, Constantin Ahlmann-Eltze in the Huber Group at EMBL Heidelberg, Charlie Barker in the Petsalaki Group at EMBL-EBI, and Sora Matsumoto in the Saka Group at EMBL Heidelberg…

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GenBank

GenBank® is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences. GenBank is part of the International Nucleotide Sequence Database Collaboration, which comprises the DNA DataBank of Japan (DDBJ), the European Molecular Biology Laboratory (EMBL), and GenBank at NCBI. These three organizations exchange data…

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[ccp4bb] Two positions available at EMBL Grenoble

Dear All, We have two job openings at EMBL Grenoble Full-Stack Developer www.embl.org/jobs/position/GR00219 Research Technician www.embl.org/jobs/position/GR00220 Best wishes _________________________________________________________ Jose A. Marquez, Senior Scientist Head of the Crystallization Facility European Molecular Biology Laboratory, Grenoble. Delivery address: EMBL, 71, Avenue des Martyrs 38000 Grenoble, France Postal address: EMBL, 71, Avenue des…

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Global Engagement Manager – EMBL-EBI

Global Engagement Manager EMBL-EBI – European Bioinformatics Institute Hinxton, United Kingdom Organisation data: Directors OfficeJob Number: EBI02195Contract Type: Staff MemberContract Duration-Length of Time (years/months): 2 yearsAdvertised Grade-Grading: Grade 6 (monthly salary from £3,456.96 after tax + benefits)Closing date: 13 December 2023 About the team/job We are seeking a Global Engagement…

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Deciphering the data deluge: how large language models are transforming scientific data curation

Large language models are changing the way we carry out scientific data curation, annotation, and research, setting the stage for a more efficient understanding of scientific literature Credit: Karen Arnott/EMBL-EBI In a world inundated with data, curating valuable information has never been more challenging, or more important. From academic papers…

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Global Engagement Manager at European Molecular Biology Laboratory (EMBL)

About the team/job We are seeking a Global Engagement Manager to lead a two-year pilot programme of engagement that will be pivotal in defining our future strategy to deliver the EMBL-EBI data resources in a more globally equitable way.  EMBL is Europe’s flagship laboratory for the life sciences. An intergovernmental…

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Fraunhofer, DESY, Hereon and EMBL sign memorandum of understanding for closer collaboration

A delegation from the Fraunhofer-Gesellschaft, the Deutsches Elektronen-Synchrotron (German Electron Synchrotron, DESY), the Helmholtz-Zentrum Hereon (Helmholtz Center Hereon) and the European Molecular Biology Laboratory (EMBL) signed a memorandum of understanding (MoU) in Hamburg today. With this declaration of intent, the four research institutions have confirmed their plans to work together,…

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ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era | Nucleic Acids Research

Abstract ChannelsDB 2.0 is an updated database providing structural information about the position, geometry and physicochemical properties of protein channels—tunnels and pores—within deposited biomacromolecular structures from PDB and AlphaFoldDB databases. The newly deposited information originated from several sources. Firstly, we included data calculated using a popular CAVER tool to complement…

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Bioconductor – GeneR

    This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see GeneR. R for genes and sequences analysis Bioconductor version: 2.8 Package manipulating nucleotidic sequences (Embl, Fasta, GenBank) Author: L. Cottret, A. Lucas <antoinelucas at gmail.com>, E. Marrakchi, O. Rogier, V. Lefort, P. Durosay,…

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Precision Mechanic CNC – EMBL Mechanical Workshop job with European Molecular Biology Laboratory (EMBL)

About the team/job EMBL is seeking an experienced precision mechanic for its Mechanical Workshop. EMBL’s Mechanical Workshop is equipped to carry out a great variety of tool-making and precision engineering work on a wide range of materials, facilitating development of new technologies as well as enhancements to existing scientific instruments….

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EMBL-EBI: coordinating biological data | InfraPortal

The European Bioinformatics Institute (EMBL-EBI) is part of the European Molecular Biology Laboratory (EMBL) and home to the world’s most comprehensive range of freely available molecular data resources. EMBL-EBI underpins flagship large-scale science programmes such as UK Biobank 500,000 whole genome sequence analysis, the Human Cell Atlas and the Darwin…

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Bioinformatician at European Molecular Biology Laboratory (EMBL)

About the team/job The Cortes-Ciriano group co-leads the CRUK-funded Stratified Medicine Pediatrics Programme (SMPEDS). SMPEDS is the UK national molecular profiling platform for children with relapsed cancer and it successfully provides infrastructure to triage patients into clinical trials by identifying molecular abnormalities in rapid turnaround, with clinical reporting through a…

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ELIXIR Financial Officer at European Molecular Biology Laboratory (EMBL)

About the team/job We are excited to offer a brand new role for an experienced Accountant with a flair for both management and financial accounting within the ELIXIR Administration and Operations team, located in Hinxton, near Cambridge. Within this varied position you will add value, overseeing ELIXIR’s budget and financial…

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Software Engineer – Data Discovery

Candidatul Ideal You have •Degree in computer science or a related field;•minimum two years experience in software development;•good knowledge of Java, at least one Javascript framework like React or Angular, as well as indexing and database technologies like Lucene, SolR, SQL;•knowledge of REST APIs and how to interface with them;•experience…

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The DNA-binding induced (de)AMPylation activity of a Coxiella burnetii Fic enzyme targets Histone H3

Statistics and reproducibility Anti-AMP IP for LC-MS/MS analysis was performed in three independent biological replicates (n = 3). TSA assay data represents technical triplicates. Time-resolved (de)AMPylation analyzed by LC-MS was performed as biological triplicates. CD measurements were performed in technical triplicates. Anisotropy data is shown as technical triplicates. Anisotropy measurements were repeated…

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Research Management Officer – EMBL-EBI

Research Management Officer EMBL-EBI – European Bioinformatics Institute Hinxton, United Kingdom Organisation data: Genome Assembly & AnnotationJob Number: EBI02182Contract Type: Staff MemberContract Duration-Length of Time (years/months): 3 years (renewable to a maximum of 9 years)Advertised Grade-Grading: Grade 5 (monthly salary starting at £3090.08 after tax) plus benefitsClosing date: 26 November…

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Europe’s coastal ecosystems being mapped out

The TREC expedition – “Traversing European Coastlines”, which began in April 2023 and is scheduled to conclude in June next year, travels for the first time along the European coast, from the Baltic Sea to the Mediterranean Sea, in an initiative led by the European Molecular Biology Laboratory (EMBL). In…

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Full time jobs in Cambridgeshire | Professional certification

Broaden your search Refine your search Sign up for job alerts Get new jobs for this search by email Found 2 Professional certification jobs About the team/job EMBL is looking for a highly motivated Open…

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06 Postdoctoral Fellowship at European Molecular Biology Laboratory (EMBL), Germany

European Molecular Biology Laboratory (EMBL), Germany, Germany invites online Application for various Postdoctoral Fellowship in their different Departments. We are providing a list of Postdoc Fellowship positions available at European Molecular Biology Laboratory (EMBL), Germany, Germany. Eligible candidate may Apply as soon as possible.   (01) Postdoctoral Fellowship Position Postdoc…

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Catalytically inactive long prokaryotic Argonaute systems employ distinct effectors to confer immunity via abortive infection

Bacterial strains and phages Escherichia coli DH5a was routinely grown in Lysogeny broth (LB) medium and used for plasmid cloning, while E. coli BL21 (DE3) was used for protein production and the in vivo assays. E. coli phages T5, T7 and Lambda-vir are gifts from Shi Chen lab (Wuhan University,…

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New molecular insights on medical cannabis

A study explores some key biological mechanisms that help explain the therapeutic effects of medicinal cannabis on inflammation and other disease states. Here, researchers from the European Molecular Biology Laboratory outline their investigations into the effect of tetrahydrocannabinol (THC) on the enzyme Autotaxin. Autotaxin (ATX) is a 99-125 kDa lysophospholipase…

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A glimpse of the next generation of AlphaFold

Progress update: Our latest AlphaFold model shows significantly improved accuracy and expands coverage beyond proteins to other biological molecules, including ligands ‍ Since its release in 2020, AlphaFold has revolutionised how proteins and their interactions are understood. Isomorphic Labs and Google DeepMind have been working together to build the foundations…

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Google DeepMind, Isomorphic Labs Unveil Next Generation of AlphaFold

In collaboration with the AI-powered drug discovery company Isomorphic Labs, Google DeepMind has released a new iteration of the protein structure prediction model, AlphaFold 2. The latest model can predict structures for most molecules in the Protein Data Bank (PDB) with high accuracy, often reaching atomic precision, in various important…

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Reducing the carbon footprint of scientific computing

As science increasingly relies on big data and AI tools, the carbon footprint of computational work is on the rise Credit: Karen Arnott/EMBL-EBI Source article(s) GREENER principles for environmentally sustainable computational science Lannelongue, L., et al. Nature Computational Science 26 June 2023 10.1038/s43588-023-00461-y Tags: artificial intelligence, bioinformatics, cloud computing, computational biology,…

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European Bioinformatics Institute | EMBL-EBI hiring Facilities and Maintenance Officer in Hinxton, England, United Kingdom

EMBL-EBI is an intergovernmental organisation who specialises in managing big data in biology. Growing rapidly over the last decade, EMBL-EBI hosts over 800 members of personnel in two permanent office buildings of different generations and designs, with one temporary office facility and a third permanent office building currently under construction…

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LocationI.pm | searchcode

PageRenderTime 18ms CodeModel.GetById 8ms RepoModel.GetById 0ms app.codeStats 0ms /Bio/LocationI.pm github.com/gjuggler/bioperl-live Perl | 435 lines | 291 code | 126 blank | 18 comment | 23 complexity | d714bd170931ca330fd7baf26e25b1c9 MD5 | raw file # # BioPerl module for…

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Sequence Submission to Gen Bank – SEQUENCE SUBMISSION TO GENBANK The GenBank DNA sequence database

SEQUENCE SUBMISSION TO GENBANK The GenBank DNA sequence database is an international collection of all known DNA sequences. GenBank is produced and distributed by the National Center for Biotechnology Information (NCBI), a division of the National Library of Medicine at National Institute of Health (NIH). One of the most important…

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EMBL-UNESCO Residency in Infection Biology Research

2 weeks ago in Morocco, with support from our local partner MEGAFLEX, Illumina participated in the African BioGenome Project Open Institute – Northern Africa Regional Workshop, and it was a great success! This is part of the series of workshops run by the African BioGenome Project (AfricaBP) to connect scientists…

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How do you deal with proteins having large loop? – User discussions

GROMACS version: GROMACS 2023.3GROMACS modification: No I am preparing files for protein-ligand simulation for PPAR alpha. The protein structure available on PDB has two truncated loops. These truncated loops introduced the artifact of long bond distances during energy minimization. If I include the loop, the system will be very large,…

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Bioinformatics Record – SRM INSTITUTE OF SCIENCE AND TECHNOLOGY Faculty of Science and Humanities

Preview text SRM INSTITUTE OF SCIENCE AND TECHNOLOGY Faculty of Science and Humanities Kattankulathur – 603203 Bioinformatics Practical Record Notebook 2023 – 2024 DEPARTMENT OF BIOCHEMISTRY RECORD NOTEBOOK DEPARTMENT OF BIOCHEMISTRY BIOINFORMATICS RECORD NOTE M. BIOCHEMISTRY 2023 – 2024 NAME: …………………………………………………… REG…………………………………………………… CONTENTS DATE EXP TITLE OF EXP PG SIGN…

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[ccp4bb] AlphaFold Database introduces sequence-based search and structure cluster members

Dear all, We are excited to announce two significant functionalities added to the AlphaFold Protein Structure Database (AlphaFold DB). The database has expanded since its inception in 2021 to cover over 214 million predicted structures from Google Deepmind’s AlphaFold 2 system. We now introduce sequence similarity-based search and enhanced prediction…

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Spotlight: Creating artificial uterus | Mirage News

EMBL researchers have created an engineered uterus that allows a closer look at a mouse embryo’s development and its interactions with the uterine environment The early stages of development of a mouse embryo, in which the embryo reaches its proper shape and internal structure. The extraembryonic ectoderm cells (green) slowly…

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European Bioinformatics Institute | EMBL-EBI hiring Service Desk Technician in Hinxton, England, United Kingdom

We are seeking two talented and enthusiastic IT support engineers to join our growing Service Desk function, providing both remote and on-site support to EMBL-EBI’s 850 users. You’ll be part of a friendly team providing first line support to a diverse user base, with requirements ranging from daily desktop issues…

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AI at EMBL: enabling responsible innovations in the life sciences

EMBL stands as a leader, exemplifying how to harmoniously integrate AI in research and through its delivery of data services   Ewan Birney, Deputy Director General of EMBL and Director of EMBL-EBI. Photo credit: Jeff Dowling/EMBL-EBI By Ewan Birney, Deputy Director General of EMBL and Director of EMBL’s European…

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Exploring EMBL-EBI sequence analysis tools and managing bioinformatics workflows

The European Bioinformatics Institute (EMBL-EBI) offers a wide range of bioinformatics sequence analysis applications for free through web and programmatic access. This two-day course is designed to provide a comprehensive overview of sequence analysis tools and how to use the workflows effectively, covering hands-on exercises and demonstrations throughout.  The first…

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