Tag: ExPASy

Bioconductor – cleaver

    This package is for version 2.13 of Bioconductor; for the stable, up-to-date release version, see cleaver. Cleavage of polypeptide sequences Bioconductor version: 2.13 In-silico cleavage of polypeptide sequences. The cleavage rules are taken from: web.expasy.org/peptide_cutter/peptidecutter_enzymes.html Author: Sebastian Gibb [aut, cre] Maintainer: Sebastian Gibb <mail at sebastiangibb.de> Citation (from…

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Expasy – Wikipedia @ WordDisk

Expasy is an online bioinformatics resource operated by the SIB Swiss Institute of Bioinformatics. It is an extensible and integrative portal which provides access to over 160 databases and software tools and supports a range of life science and clinical research areas, from genomics, proteomics and structural biology, to evolution…

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KEGG ENZYME: 1.14.14.86

Entry EC 1.14.14.86               Enzyme                                  Name ent-kaurene monooxygenase;ent-kaurene oxidase (misleading) Class Oxidoreductases;Acting on paired donors, with incorporation or reduction of molecular oxygen;With reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen into the other donorBRITE hierarchy Sysname ent-kaur-16-ene,[reduced NADPH—hemoprotein reductase]:oxygen oxidoreductase (hydroxylating) Reaction(IUBMB) ent-kaur-16-ene + 3 [reduced NADPH—hemoprotein…

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Can an enzyme have multiple EC numbers?

Can an enzyme have multiple EC numbers? 2 Can an enzyme have multiple EC numbers? I have used run_dbcan and taken the hotpep output to identify all carbohydrate active enzymes in my metagenomic sample. I have more unique EC numbers than enzymes in the output when those EC numbers are…

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comparing and aligning two sequences to spot protein level differences using Expasy / Uniprot clustalO : bioinformatics

Hi there, confused student. I’ve been using expasy translate to convert two nucleotide sequences into protein where I can then see open reading frames. By then using uniprot clustalO I hoped to paste the open reading frames for both sequences and align them to spot any differences between the two….

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Biopython Contact Map | Contact Information Finder

Listing Results Biopython Contact Map Protein Contact Maps using Biopython Warwick 9 hours ago Warwick.ac.uk View All Protein Contact Maps using Biopython. When working with protein 3D structures, a contact map is usually defined as a binary matrix with the rows and columns representing the residues of two different chains….

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highly accurate protein structure prediction with alphafold

In: StatPearls [Internet]. team at our virtual booth on the exhibitor tab. Published online 22 07; DOI: 10.1038/s41586-021-03819-2. Extended Data Fig. Found insideAn important feature of this work is the S-plus subroutines provided for analyzing actual data sets. Coupled with the discussion of new theoretical research, the book should benefit…

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KEGG ORTHOLOGY: K15816

Entry EC 4.2.1.128                Enzyme                                  Name lupan-3beta,20-diol synthase;LUP1 (gene name) Class Lyases;Carbon-oxygen lyases;Hydro-lyasesBRITE hierarchy Sysname (3S)-2,3-epoxy-2,3-dihydrosqualene hydro-lyase (lupan-3beta,20-diol-forming) Reaction(IUBMB) lupan-3beta,20-diol = (3S)-2,3-epoxy-2,3-dihydrosqualene + H2O [RN:R09743] Reaction(KEGG) Substrate lupan-3beta,20-diol [CPD:C19863] Product (3S)-2,3-epoxy-2,3-dihydrosqualene [CPD:C01054]; H2O [CPD:C00001] Comment The reaction occurs in the reverse direction. The recombinant enzyme from Arabidopsis thaliana gives a 1:1 mixture of…

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