Tag: fData

Bioconductor Code: phenomis

— editor_options: markdown: wrap: 72 — # **phenomis**: An R package for post-processing and univariate analysis [![Travis build status](https://travis-ci.org/SciDoPhenIA/phenomis.svg?branch=master)](https://travis-ci.org/odisce/phenomis) ## Description This package provides methods to perform the statistical analysis of phenomics datasets (e.g. in proteomics and metabolomics). These methods include the reading of datasets (as 3 table *dataMatrix*, *sampleMetadata*…

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Changed from an Icarus to a Icarus_SoM gaves error compiling – Nordic Q&A – Nordic DevZone

Hi, I’m trying to use the code of a board from Actinius in another board from Actinius but a SoM. When compiling I’ve got one error that I can’t understand. This is probably because of the configurations. [133/311] Building C object CMakeFiles/app.dir/src/modules/gpios/gpios.c.objFAILED: CMakeFiles/app.dir/src/modules/gpios/gpios.c.obj C:\ncs\toolchains\v2.3.0\opt\zephyr-sdk\arm-zephyr-eabi\bin\arm-zephyr-eabi-gcc.exe -DKERNEL -DLFS_CONFIG=zephyr_lfs_config.h -DMBEDTLS_CONFIG_FILE=\”nrf-config.h\” -DMBEDTLS_USER_CONFIG_FILE=\”nrf-config-user.h\” -DNRF9160_XXAA -DNRF_SKIP_FICR_NS_COPY_TO_RAM…

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Density plot for Quantile and Quartile normalization in geomx workflow

I am analyzing geomx data with quantile and quartile normalization , while workflow has background expression and quartile normalization in R package: GeoMX workflow, GeoMX tools. I am getting the nice normalize table with quantile normalization but when I am trying to make density plot. It is not creating a…

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west build MCUboot failed – Nordic Q&A – Nordic DevZone

Procedure to reproduce this issue is as follows.1. cd D:\ncs\v2.3.0\bootloader\mcuboot\boot\zephyr2. west build -b nrf5340dk_nrf5340_cpuapp Log messages of west build are as follows.D:\ncs\v2.3.0\bootloader\mcuboot\boot\zephyr>west build -b nrf5340dk_nrf5340_cpuapp— west build: generating a build system…[100/281] Building C object CMakeFiles/app.dir/nrf_cleanup.c.objFAILED: CMakeFiles/app.dir/nrf_cleanup.c.objD:\ncs\toolchains\v2.3.0\opt\zephyr-sdk\arm-zephyr-eabi\bin\arm-zephyr-eabi-gcc.exe -DKERNEL -DMBEDTLS_CONFIG_FILE=\”mcuboot-mbedtls-cfg.h\” -DNRF5340_XXAA_APPLICATION -DNRF_SKIP_FICR_NS_COPY_TO_RAM -DUSE_PARTITION_MANAGER=0 -D__PROGRAM_START -D__ZEPHYR__=1 -I../include -I../targets -ID:/ncs/v2.3.0/bootloader/mcuboot/boot/bootutil/include -ID:/ncs/v2.3.0/zephyr/include -Izephyr/include/generated -ID:/ncs/v2.3.0/zephyr/soc/arm/nordic_nrf/nrf53 -ID:/ncs/v2.3.0/zephyr/soc/arm/nordic_nrf/common/….

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Compilation Fail – Nordic Q&A – Nordic DevZone

ncsĀ 2.3.0 Good morning,for a few days, I can no longer compile a firmware that I use regularly. I don’t understand what could have happened. I’ll post the compilation with the errors if anyone has any ideas about it.Thank you CMAKE/BUILD [cmake] CMake Error at /opt/nordic/ncs/v2.3.0/zephyr/cmake/modules/extensions.cmake:2520 (message): [cmake] BOARD is not…

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Solved Provide the correct and verified code for the

Provide the correct and verified code for the following in R, the GEO number is GSE16015 1)Download any microarray data of interest from GEO with at least 100 samples and two classes. 2) After performing EDA and preprocessing, list the data attributes, including pdata and fdata. 3) State the effects…

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NCS v1.8.0: OpenThread: nrf-config.h: No such file or directory – Nordic Q&A – Nordic DevZone

I have a project using NCS v1.8.0 where I enabled openthread. For some reason, when trying to build `mbedtls/library/ecjpake.c`, the make command uses `-DMBEDTLS_CONFIG_FILE=”nrf-config.h”` and fails on: > nrf-config.h: No such file or directory I’m not sure why it tries to use this file because `MBEDTLS_CFG_FILE` is set to `config-tls-generic.h`….

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Where is genotype calls in this dataset?

Where is genotype calls in this dataset? 0 Hello, I have a dataset from GEO, with ID = GSE20206. I have already checked the dataset using the below code in R: geo.sample <- getGEO(“GSE20206”, GSEMatrix = TRUE) data1 <- geo.sample[[1]] data2 <- geo.sample[[2]] data3 <- geo.sample[[3]] sample_info <- pData(data1) snp_info…

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How to generate feature Data(fData)

How to generate feature Data(fData) 0 I’m trying to analyze scATAC-seq data using Cicero, but I lack the metadata for peak(fData). I don’t know how to generate this metadata.Can someone tell me which tool can produce it? Note: This data was not generated using the 10X platform but Fluidigm C1….

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