Tag: fimo
Transcription Factor Functions
Transcription Factor Functions 1 I have been wondering if there is a database that contains information about whether a transcription factor has a repressive or an activating or a context-dependent function. factor database transcription • 71 views If you performed a whole-genome FIMO scan, selecting those hits that match your…
MEME suite compare motifs between species
MEME suite compare motifs between species 1 Hello, I have a set of 5kb sequences upstream of a gene from different primates, and I would like to know what motifs are in enhancers and promoters of primates vs the 5kb upstream sequences of a set of the same gene but…
Exporting list of enriched motif sequences from CentriMo in MEME Suite
Hi, I have a set of sequences for which I have identified a list of significant motifs through MEME. I then used FIMO to find specific regions in my sequences where the identified significant motifs were enriched. It gives me enriched locations for my motifs. It does not give me…
How to graphically represent a known DNA motif in a list of DNA sequences
How to graphically represent a known DNA motif in a list of DNA sequences 0 Hello. I was using FIMO to search a known motif in a list of genes. FIMO gives me a list of motif occurences, that is the matched sequence, the p-value, the q-value and also the…
