Tag: findMotifsGenome.pl

Can I use the summits.bed from MACS2 on HOMER

Can I use the summits.bed from MACS2 on HOMER 1 I understand that to run HOMER you need BED files, so could I use the BED output file from “macs2 callpeak” to run “findMotifsGenome.pl”? Homer Macs callpeak bed • 40 views • link updated 2 hours ago by seidel 8.3k…

Continue Reading Can I use the summits.bed from MACS2 on HOMER

Problem with HOMER -find

Problem with HOMER -find <motif file> 0 I am trying to search for specific motifs in my set of promoters. It should be possible with the option -find *.motif I know that there are for sure some occurrences because I have found them with search function in Notepad. However HOMER…

Continue Reading Problem with HOMER -find