Tag: .Gbk
Append assembly accession to nucleotide accession number in RefSeq Genbank file
Append assembly accession to nucleotide accession number in RefSeq Genbank file 0 Hi everyone, When I want to append the filename to the contig header in a multi-fasta file, I usually use for F in *.fasta; do N=$(basename $F .fasta) ; bbrename.sh in=$F out=${N}_mod.fasta prefix=$F addprefix=t ; done However, this…
How To Download .Gbk Files From Ncbi Website
How To Download .Gbk Files From Ncbi Website 1 how to download .gbk files from ncbi website? ncbi download genbank • 25k views • link updated 38 minutes ago by Ram 34k • written 9.8 years ago by Arun • 0 Search for the sequence that you want. The “display…
parsing gbk files (antismash result)
parsing gbk files (antismash result) 0 Hello I used antismash from the CLI and I got 700 gbk files (1 gbk file per each analyzed genome). I used the following script to retrieve the predicted products from the gbk files: from Bio import SeqIO import glob for files in glob.glob(“*.gbk”):…
New Mac program for molecular biologists
Tool:New Mac program for molecular biologists 12 I would like to present here a program – BioLabDonkey – for molecular biologists who are Mac users. This program is written from scratch in a language native for Mac – Swift. The program can be downloaded from mac App Store – apps.apple.com/us/app/biolabdonkey/id1470827582?ls=1&mt=12…
