Tag: GDAC

Therapy response for multiple cancer types 0 I need help with accessing some kind of analysis. I will appreciate any comment, advice or recommendation about it. I need to learn how expression levels of some genes are associated with therapy (chemo and immunotherapy) response (binary or survival time) for a…

DOI: 10.18129/B9.bioc.RTCGA.clinical     This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see RTCGA.clinical. Clinical datasets from The Cancer Genome Atlas Project Bioconductor version: 3.8 Package provides clinical datasets from The Cancer Genome Atlas Project for all cohorts types from gdac.broadinstitute.org/. Clinical data format…

Hi guys, I hope you are fine. I’m not good in English so if you couldn’t understand my question, please feel free to reply. I’m a beginner of bioinformatics. I want to practice differential expressed gene (DEG) analysis in R. The RNA seq data I used was downloaded from broad…

DOI: 10.18129/B9.bioc.RTCGA.mRNA     This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see RTCGA.mRNA. mRNA datasets from The Cancer Genome Atlas Project Bioconductor version: 3.11 Package provides mRNA datasets from The Cancer Genome Atlas Project for all available cohorts types from gdac.broadinstitute.org/. Data format…

TCGA survival by gene expression. Gene is missing everywhere I look, but should be possible? 0 Hello, I am trying to generate TCGA survival plots with gene expression data. I found a few interesting guides out there, but the genes I am interested in don’t work. The genes I want…

DOI: 10.18129/B9.bioc.RTCGA.rnaseq     This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see RTCGA.rnaseq. Rna-seq datasets from The Cancer Genome Atlas Project Bioconductor version: 3.10 Package provides rna-seq datasets from The Cancer Genome Atlas Project for all cohorts types from gdac.broadinstitute.org/. Rna-seq data format…

regarding coexpression analysis (by pearson method) of genes shortlisted from expression profile of a dataset obtained from GDAC Firehouse database 0 Hello guys, Should i consider genes having “zero” normalized count given in expression data of a dataset while doing coexpression analysis with respect to a particular gene (whose expression…