Tag: Gene-Ontology

PANTHER functional classification

PANTHER functional classification 0 Is there a way to programmatically get the main/root/parent PANTHER Protein Class for a gene list, and also include all the CHILD classification terms? PANTHER Gene-Ontology • 52 views • link updated 7 hours ago by Ram 41k • written 7 hours ago by rls_08 ▴…

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Seeking Assistance for Interpreting a Network Representation on String-DB.org

Seeking Assistance for Interpreting a Network Representation on String-DB.org 0 Dear BioStars Community, I am currently seeking guidance and insights regarding the interpretation of the network representation displayed in the attached image sourced from string-db.org. In this visualization, each data point is presumed to correspond to a gene, ultimately translatable…

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(18 August – “Enzyme Stability Prediction”) A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge

Welcome to a webinar: John Mitchell “Kaggle Competition Review: Novozymes Enzyme Stability Prediction” Friday 18 August, 18.00 (CET time, e.g. Paris time) Full announcement: www.kaggle.com/competitions/cafa-5-protein-function-prediction/discussion/418295 Welcome to the webinar on Friday: John Mitchell who is expert both in bioinformatics and machine learning, and also experienced Kaggler and one of the…

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Gene ontology hordeum vulgare transcripts

Gene ontology hordeum vulgare transcripts 0 Hello, I have hordeum vulgare addnotation: HORVU.MOREX.r2.UnG0628590.1 HORVU.MOREX.r2.5HG0361000.1 HORVU.MOREX.r2.UnG0628880.1 I would like to search GO and uniprot number and name for my genes. Which tools I can use? gene-ontology hordeum protein uniprot • 30 views • link updated 9 minutes ago by Ram 39k…

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(27 July – “DeepLoc”) A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge

Henrik Nielsen,Vineet Thumuluri , José Juan Almagro Armenteros “DeepLoc 2.0: multi-label subcellular localization prediction using protein language models” Thursday 27 July, 19.00 (CET time) Add to Google Calendar The talk will be based on the recent paper with the same title (Nucleic Acids Res. 2022 (www.ncbi.nlm.nih.gov/pmc/articles/PMC9252801/) ). The prediction of…

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(3 July) A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge

News:(3 July) A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge 1 CAFA 5 Protein Function Prediction Critical Assessment of Functional Annotation challenge is ongoing (2 months till end) on the Kaggle platform. The task is to predict gene-ontology terms for proteins based mainly on…

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A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge

News:A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge 0 CAFA 5 Protein Function Prediction Critical Assessment of Functional Annotation challenge is ongoing (2 months till end) on the Kaggle platform. The task is to predict gene-ontology terms for proteins based mainly on their structure….

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Search for descriptions corresponding to a list of go terms

Search for descriptions corresponding to a list of go terms 1 Hello, I have a list of GO terms and I want to know for each of them (1) what they correspond to and (2) are they classified in “molecular function”, “cellular component” or “biological process”? How can I do…

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Geography shapes the genomics and antimicrobial resistance of Salmonella enterica Serovar Enteritidis isolated from humans

Sample dataset description To reconstruct the phylogeny of S. Enteritidis human isolates in a global context, 159 genomes of S. Enteritidis from different countries were selected and downloaded from our initial query of public data in addition to the 16 S. Enteritidis genomes our laboratory sequenced in the study. In…

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Escherichia coli K-12 substr. MG1655 GO:0033468

Escherichia coli K-12 substr. MG1655 Gene-Ontology-Terms Class: GO:0033468 – CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process Synonyms: CMP-KDO biosynthesis, CMP-KDO biosynthetic process, CMP-keto-3-deoxy-D-manno-octulosonic acid anabolism, CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthesis, CMP-keto-3-deoxy-D-manno-octulosonic acid formation, CMP-keto-3-deoxy-D-manno-octulosonic acid synthesis Definition: The chemical reactions and pathways resulting in the formation of CMP-keto-3-deoxy-D-manno-octulosonic acid, a substance composed of the acidic…

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