Tag: GenomicsDBImport
GATK’s GenomicsDBImport takes forever…
GATK’s GenomicsDBImport takes forever… 0 Hello! I have 90 samples in the form of vcf files, together they are a few terabytes in size. I wish to create a single multi-sample vcf file for downstream analysis. I am trying to use GenomicsDBImport for this, but it just takes too long…
Contig chr1 given as location, but this contig isn’t present in the Fasta sequence dictionary
Badly formed genome unclippedLoc: Contig chr1 given as location, but this contig isn’t present in the Fasta sequence dictionary 2 Hi everyone, I’m trying to run Mutect2 for WES cancer data. However, since their Resource bundle only supports h19 seems I cannot proceed (I want to compare it with Strelka2…
