Tag: ggalt

Log2FC values slightly higher in some genes after DESeq2 shrinkage

Hi, I have a question about DESeq2 LFCshrinkage: Is it possible that some genes have a slightly higher LFC after shrinkage? It happened during my RNAseq DE analysis, I have very deeply sequenced samples with large base means. I tried visualizing using MAplot check, and it looks fine. I’m mainly…

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Resolved: Adding a legend to ggplot

Question: I have the below dataset; Player Goals Shots Regan Charles-Cook 10 32 Tony Watt 9 36 Bruce Anderson 8 26 Liam Boyce 8 44 Kyogo Furuhashi 8 31 Alfredo Morelos 8 80 Christian Ramirez 8 41 Liel Abada 7 57 Martin Boyle 7 43 Kevin van Veen 7 45…

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GDCquery_Maf error

GDCquery_Maf error 0 @76e1237b Last seen 1 day ago Singapore Hi all, I really need some help. I am trying to run GDCquery_Maf which worked fine until yesterday. Now I get the following error: Error in GDCquery(paste0(“TCGA-“, tumor), data.category = “Simple Nucleotide Variation”, : Please set a valid workflow.type argument…

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