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Tag: gitlab
504 gateway timeout rstudio ondemand – IFB Core Cluster
Hi, I’m trying to access rstudio via the ondemand portal but independently of how many resources I allocate to it I can’t connect to the rstudio and get error 504 gateway timeout when trying to access the instance. I can regularly access rstudio from the rstudio older portal but I’m…
Bioinformatics scientist | GENOMINES
Job Description Who we are Genomines is a young biotechnology company based in Paris and Saclay, specialized in sustainable extraction of Nickel from plants. The mission of Genomines is to usher in a new era of sustainable mining by using genetically enhanced plants to extract metals from soil (agromining). Through…
Post Masters RA – Bioinformatics Data Scientist Job
Job Description The Earth and Biological Sciences Directorate (EBSD) leads novel and necessary research in three core areas: Atmospheric and Climate sciences, Biological Sciences, and Environmental Molecular Sciences. The contributions of EBSD staff are many as we continue to elevate the impact of PNNL’s science mission: to understand, predict, and…
Bioinformatics Analyst at Volta Labs, Inc.
Volta Labs is an MIT spin-off that has unlocked powerful new DNA sequencing capabilities by developing novel fluidic technology. Building off of this core technology, Volta has created a product that streamlines DNA sequencing sample prep. Volta is at the forefront of a sequencing revolution, driving sequencing towards seamless ease…
400 : Bad Request OAuth state missing from cookies – JupyterHub
I have setup two services of jupyterhub on single server which are running on different portroot@e2e-94-254:~# netstat -lntup | grep nodetcp 0 0 0.0.0.0:8000 0.0.0.0:* LISTEN 683069/nodetcp 0 0 0.0.0.0:20000 0.0.0.0:* LISTEN 682679/nodetcp 0 0 127.0.0.1:20002 0.0.0.0:* LISTEN 682679/nodetcp 0 0 127.0.0.1:8001 0.0.0.0:* LISTEN 683069/node I have setup nginx as…
Post Masters RA – Bioinformatics Data Scientist – Richland
**Overview** The Earth and Biological Sciences Directorate (EBSD) leads novel and necessary research in three core areas: Atmospheric and Climate sciences, Biological Sciences, and Environmental Molecular Sciences. The contributions of EBSD staff are many as we continue to elevate the impact of PNNL’s science mission: to understand, predict, and control…
community/duply: upgrade to 2.5.2 – aports
diff options context: 12345678910152025303540 space: includeignore mode: unifiedssdiffstat only author Celeste <20312-Celeste@users.gitlab.alpinelinux.org> 2023-12-02 02:49:07 +0000 committer Francesco Colista <fcolista@alpinelinux.org> 2023-12-02 07:33:41 +0000 commit aaac25730406cfe639a71313c1a76c04a1545b7b (patch) tree ed565eca5907ea2cdd55c71e97aed2cb67e40c58 /?id=24b21140e23c7a5c5491d91da286c70547380c3c parent e98db8ebf0d9563680fea4afefd79ff3c89b8937 (diff) community/duply: upgrade to 2.5.2HEADmaster Diffstat (limited to ‘?id=24b21140e23c7a5c5491d91da286c70547380c3c’) 0 files changed, 0 insertions, 0 deletions Read more here: Source…
Energy Jobline hiring Senior Bioinformatics Engineer in Cambridge, England, United Kingdom
Company DescriptionGenomics England partners with the NHS to provide whole genome sequencing diagnostics. We also equip researchers to find the causes of disease and develop new treatments – with patients and participants at the heart of it all. Our mission is to continue refining, scaling, and evolving our ability to…
The Top 5 Alternatives to GitHub for Data Science Projects
Image by Author GitHub has long been the go-to platform for developers, including those in the data science community. It offers robust version control and collaboration features. However, data scientists often have unique requirements, such as handling large datasets, complex workflows, and specific collaboration needs that GitHub may not…
Navigating the Evolving Landscape of Generative AI
In a rapidly evolving tech landscape, the adoption of generative AI-powered tools is on the rise. According to a June report by Productboard, 9 out of 10 venture capital-backed companies have plans to incorporate generative AI into their products. Furthermore, nearly two-thirds of these companies aim to implement this technology…
JupyterHub for my University with Nbgrader
Dear Muhammad, In case this helps, here is the configuration file for the image we are using on JupyterHub@Paris-Saclay, with Python, C, C++, R, SageMath, nbgrader (and libraries). Not C# or SQL though. Not much documentation either. Agregating all these in a single image is tough due to recurent version conflicts; maybe starting from…
The ABCs of AI tools
Listen to the article 12 min This audio is auto-generated. Please let us know if you have feedback. OpenAI’s ChatGPT served as a catalyst for a torrent of generative AI-powered tools and a fresh crop of foundational models. For CIOs tasked with helming adoption efforts, it can be a challenge…
How generative AI is transforming the customer service experience
If you’ve had the chance to chat with Bard or another conversation AI tool in the last year, you probably, like me, walked away with a distinct impression that services like these are the future of enterprise technology. As new generative AI capabilities continue to become more readily accessible, you…
Cineca-ai – HPC Cineca
Version: 2.02 (G100) Availability: GALILEO100 Target: all Official web site: gitlab.www.hpc.cineca.it/sorland2/cineca-ai Related Commands: If you wish to activate the default environment: $ conda activate $CINECA_AI_ENV – If you wish to create a personal conda env with your installations, you can use the local conda channel to access…
who can share a package of gromacs-drude – User discussions
RogerM November 27, 2023, 8:07am 1 Recently, I wanted to run a polarizable simulation using gromacs with drude force filed. I got the install package using the command in MacKerell Lab, but it failed when I used “git clone . It shows the following error:fatal: unable to connect to git.gromacs.org:git.gromacs.org[0:…
Implementing Soft Nearest Neighbor Loss in PyTorch | by Abien Fred Agarap | Nov, 2023
Representation learning is the task of learning the most salient features in a given dataset by a deep neural network. It is usually an implicit task done in a supervised learning paradigm, and it is a crucial factor in the success of deep learning (Krizhevsky et al., 2012; He et…
jupyterhub jobs – 2 Active jupyterhub Jobs Openings (Nov 2023)
jupyterhub jobs – 2 Active jupyterhub Jobs Openings (Nov 2023) – Shine.com Filter by Location Experience Salary More filters Job Details At Pitney Bowes, we do the right thing, the right way. As a member of our team, you can too. We have amazing people who are the driving force,…
Possible inclusion of PLUMED interface – Developers discussions
Dear GROMACS developers, we (PLUMED developers) noticed that GROMACS now makes it possible to easily add plugins modifying forces. We would like to investigate if it makes sense for us to implement an interface for PLUMED in the spirit of the one introduced for the Colvars package in this commit:…
REMBI Lab Guide < BioImage Archive < EMBL-EBI
The aim of this guide is to help you prepare in advance to submit your data to the BioImage Archive. In particular, it provides an overview of what data you should submit, as well as the information you’ll need to provide with your images so that you can think about…
Volta Labs, Inc. hiring Senior Bioinformatics Engineer/Analyst in Boston, Massachusetts, United States
Volta Labs is an MIT spin-off that has unlocked powerful new DNA sequencing capabilities by developing novel fluidic technology. Building off of this core technology, Volta has created a product that streamlines DNA sequencing sample prep. Volta is at the forefront of a sequencing revolution, driving sequencing towards seamless ease…
GitLab Introduces Duo Chat: A Conversational AI Tool for Productivity
In software development, developers often face challenges when working with complex code or managing project issues efficiently. Finding the correct information and assistance in the workflow can be a hurdle. To address this, GitLab has introduced a new tool called Duo Chat, which aims to simplify the developer experience by…
IJMS | Free Full-Text | CRISPR/Cas9 Directed Reprogramming of iPSC for Accelerated Motor Neuron Differentiation Leads to Dysregulation of Neuronal Fate Patterning and Function
1. Introduction As the world population ages, neurodegenerative diseases are increasing. The outcome of these diagnoses varies but can lead to fatality 50% of the time within 15–20 months [1]. Treatments for neurodegeneration, in particular motor neuron (MN) diseases, are restricted due to the limitations of motor neuron repair and…
Cuda error with gromacs 2023.3 (CUDA error #700 an illegal memory access) – User discussions
roozi November 7, 2023, 10:16pm 1 GROMACS version:2023.3GROMACS modification: NoI ‘m getting a CUDA error using the standard Gromacs 2023.3 version on my laptop using:NVIDIA RTX-4060 gpu and 20 OpenMP threads (corei7 generation 13).Cuda version: 12.3 nvidia driver version: 545.84 . Os: Ubuntu 22.4.02 (installed on WSL2 , WINDOWS 11)…
Timeline for Upcoming Releases and Milestones – Developers discussions
This thread will be updated to inform about the dates of the next milestones and releases. See Milestones · GROMACS / GROMACS · GitLab for a full list. Please make sure that all your MRs are submitted and reviewed well in time before the milestones. 2024-beta – milestone: 2023-11-10 (the…
Google exhibits off what’s subsequent for Vertex AI, basis fashions
Head over to our on-demand library to view classes from VB Remodel 2023. Register Right here Leia mais AI is a core focus for Google, and at its Google Subsequent occasion right this moment the corporate introduced a sequence of updates throughout its portfolio that profit from the ability of…
Genomics England hiring Senior Bioinformatics Engineer in London, England, United Kingdom
Company DescriptionGenomics England partners with the NHS to provide whole genome sequencing diagnostics. We also equip researchers to find the causes of disease and develop new treatments – with patients and participants at the heart of it all. Our mission is to continue refining, scaling, and evolving our ability to…
Container is gone after start – JupyterHub
Hi ! I try to mount a jupyterhub container. The server seems to run smoothly but cannot create a user notebook container (DockerSpawner). After a few seconds, the container disappears. Hereafter is my jupyterhub log (user: donzel): [D 2023-11-03 14:18:16.039 JupyterHub application:908] Looking for /srv/jupyterhub/jupyterhub_config in /srv/jupyterhub [D 2023-11-03 14:18:16.054…
Senior Bioinformatics Engineer by Genomics England in Cambridge Ref: 220521761
Company Description Genomics England partners with the NHS to provide whole genome sequencing diagnostics. We also equip researchers to find the causes of disease and develop new treatments – with patients and participants at the heart of it all. Our mission is to continue refining, scaling, and evolving our ability to…
RStudio Guide | The GitLab Handbook
RStudio Guide {:toc .toc-list-icons .hidden-md .hidden-lg} {::options parse_block_html=“true” /} What is R? Similar to Python, R is an open-source statistical software that is used to clean and analyze data. It is popular within the data science community and has many packages that make statistical modeling easier for statisticians and data…
Scientists Uncover Genetic Secrets of Butternuts
UConn undergraduates mapped the DNA of the endangered butternut tree as part of a broader initiative to study overlooked endangered species. The research offers insights into survival mechanisms and provides students with a valuable real-world research experience. An international collaboration reveals the genetic secrets of endangered species, from trees to…
C++20 support in the codebase – Developers discussions
vedran October 24, 2023, 9:57am 1 Hello, Our code base currently compiles as C++17 as we have decided not to bump the standard and subsequently the required compiler versions for 2024 release. By setting CMAKE_CXX_STANDARD to 20 in CMakeLists.txt, one can easily see that GROMACS can not at the moment…
Looking for a Job in Croatia? This Week’s Top 10 from Posao.hr (October 22, 2023)
October 22, 2023 – Looking for a job in Croatia? A weekly feature on TCN, in partnership with leading job site agency, Posao.hr, who present a selection of weekly job listings. Strabag AG is looking for Senior DevOps Engineer / Architect (m/f/d). The location of work is Belgrade and Zagreb….
gromacs 2023.3 – Download, Browsing & More
gromacs 2023.3 – Download, Browsing & More | Fossies Archive “Fossies” – the Fresh Open Source Software Archive Contents of gromacs-2023.3.tar.gz (19 Oct 10:41, 42071770 Bytes) About: GROMACS performs molecular dynamics, i.e. simulates the Newtonian equations of motion for systems with hundreds to millions of particles (designed for biochemical molecules…
Top F5 WAF Alternatives in 2023
F5 Cloud WAF combines signature and behaviour-based threat detection mechanisms to protect applications, regardless of the deployment location. It protects against injection attacks, session hijacking, cross-site scripting, man-in-the-middle attacks, and numerous other vulnerabilities, with continuously updated policies to shield against emerging threats. Most Important Benefits of F5 WAF Hybrid Deployment…
Looking for a Job in Croatia? This Week’s Top 10 from Posao.hr (October 15, 2023)
October 8, 2023 – Looking for a job in Croatia? A weekly feature on TCN, in partnership with leading job site agency, Posao.hr, who present a selection of weekly job listings. Kempinski hotel Adriatic (Skiper hoteli d.o.o.) is looking for Groups & Events Coordinator (m/f/d). The location of work is…
AI hasn’t yet enhanced software development processes: Google Cloud
Listen to the article 3 min This audio is auto-generated. Please let us know if you have feedback. Dive Brief: Despite robust enthusiasm for AI’s potential in software development, the technology’s impact has been relatively minimal thus far, according to Google Cloud’s State of DevOps 2023 report, published Thursday. The…
FreshPorts — devel/RStudio/files/patch-src_cpp_server_CMakeLists.txt
non port: devel/RStudio/files/patch-src_cpp_server_CMakeLists.txt SVNWeb Number of commits found: 3 Thu, 10 Jun 2021 [ 17:11 Yuri Victorovich (yuri) ] ade17ad ade17adf6f1f5671bbbd8cf62f14f38fe88f33f4 devel/RStudio/Makefile ade17adf6f1f5671bbbd8cf62f14f38fe88f33f4 devel/RStudio/distinfo ade17adf6f1f5671bbbd8cf62f14f38fe88f33f4 devel/RStudio/files/patch-CMakeGlobals.txt ade17adf6f1f5671bbbd8cf62f14f38fe88f33f4 devel/RStudio/files/patch-src_cpp_CMakeLists.txt ade17adf6f1f5671bbbd8cf62f14f38fe88f33f4 devel/RStudio/files/patch-src_cpp_core_system_PosixSystem.cpp ade17adf6f1f5671bbbd8cf62f14f38fe88f33f4 devel/RStudio/files/patch-src_cpp_desktop_DesktopMain.cpp ade17adf6f1f5671bbbd8cf62f14f38fe88f33f4 devel/RStudio/files/patch-src_cpp_desktop_DesktopWebView.cpp ade17adf6f1f5671bbbd8cf62f14f38fe88f33f4 devel/RStudio/files/patch-src_cpp_diagnostics_CMakeLists.txt ade17adf6f1f5671bbbd8cf62f14f38fe88f33f4 devel/RStudio/files/patch-src_cpp_server_CMakeLists.txt ade17adf6f1f5671bbbd8cf62f14f38fe88f33f4 devel/RStudio/files/patch-src_cpp_session_CMakeLists.txt (Only the first 10 of 13 ports in…
Valo Health hiring Staff Scientist, Bioinformatics in Boston, Massachusetts, United States
About UsValo Health is a technology company that is integrating human-centric data and AI-powered technology to accelerate the creation of life-changing drugs for more patients faster. Valo was created with the belief that the drug discovery and development process can and should be faster and less expensive, with a much…
Valo Health hiring Staff Scientist, Bioinformatics in San Francisco, California, United States
About UsValo Health is a technology company that is integrating human-centric data and AI-powered technology to accelerate the creation of life-changing drugs for more patients faster. Valo was created with the belief that the drug discovery and development process can and should be faster and less expensive, with a much…
Openapi: Get rid of redirection
How to exclude a redirect endpoint from swagger openapi Im using nestjs. we have root endpoint / which redirects to /health endpoint. since its just redirection, how to remove that from swagger?… Read more > Remove redirect from domain – cPanel API 2 Remove redirect from domain. This function removes…
R Studio 2022 – Avseetvf
At rstudio::conf(2022) our workshops featured hands-on exercises, discussions, and Q&A forums. This was an opportunity to meet, share, and collaborate with …In July, we wrapped up rstudio::conf(2022). Throughout the conference, we had an exciting array of workshops, an inspiring lineup of speakers, Birds of a …We are delighted to announce the rstudio::conf…
Site Reliability Engineer, Bioinformatics Job Description
Posted 26 days ago Site Reliability Engineer, Bioinformatics Exact Sciences – Madison, WI Apply now Position Overview Exact Sciences is revolutionizing the cancer diagnostics space and is now looking for another Site Reliability Engineer (SRE) to join its incredible team. SREs at Exact Sciences support our mission by pushing out…
Lamini’s Language Model Refinement Platform Runs Exclusively on AMD GPUs
Machine learning startup Lamini has announced that its large language model (LLM) refining platform runs exclusively on AMD’s Instinct GPUs. The platform allows enterprises to fine-tune existing foundation models, such as OpenAI’s GPT3 or Meta’s Llama 2, against their internal datasets. Lamini’s choice of hardware sets it apart from other…
Starting Server for Non-Default Users in JupyterHub: 500 Internal Server Error – JupyterHub
I am encountering an issue with starting a server for non-default users in JupyterHub. When attempting to start a server for a user named “mahdi” (or any other non-default user), I receive the following error message in the JupyterHub container logs: [I 2023-09-20 07:40:15.461 JupyterHub provider:659] Creating oauth client jupyterhub-user-mahdi…
Backend Developer – Python – AI/ML – ApTask
Position Lead Backend Developer – AIML Location Allentown PA/ Boston MA Job Type Contract to Hire / Permanent Pay rate $70/hr on C2C / $140k/Annum+ Benefits The developer in these roles makes an impact in the organization by designing and developing AIML solutions. This role is full hands-on…
AI Is a “Must-Have” in GitLab’s 2023 Global DevSecOps Report
GitLab have released their 2023 Global DevSecOps AI report, with a key finding being that AI and ML use is evolving from “nice to have” to “must have”. The report shows that 23% of organizations are already using AI in software development, and of those, 60% are using it daily….
Senior Research Scientist, Bioinfomatician (Cancer Science Institute) job with NATIONAL UNIVERSITY OF SINGAPORE
(JR:21694) Job Description The position of Postdoctoral Fellow – with an emphasis on computational cancer genomics – is immediately available at the Cancer Science Institute of Singapore (a part of National University of Singapore). The Postdoctoral Fellow will work with the laboratories of Professor Ashok Venkitaraman, on a project studying the…
Why Developers and Staff+ Engineers Should Get Involved in Open-Source Collaborative Development
Key Takeaways Today’s software development includes extensive use of open-source libraries, APIs, and other components. Most companies use over 70% open source in their infrastructure, products, and services. It is important for modern software developers, especially in staff+ roles, to know how to work with open source. There…
Report: Only 23% of development teams have implemented AI already
Only 23% of development teams are actually implementing AI today in their software development life cycle. This is according to GitLab’s State of AI in Software Development report, which surveyed over 1,000 DevSecOps professionals in June 2023. Despite low adoption now, when you add in the number of teams planning…
Full Stack Web Developer – Hinxton, Cambridgeshire, United Kingdom – EMBL
Description We are looking for an enthusiastic Full Stack Developer to join the EMBL-EBI Web Development team in our mission to create scientific web services that are aesthetically pleasing, useful, usable, and empower our employees and scientists worldwide to solve the biggest challenges in biology. The team provides a centralised…
Research Associate (m/f/x) job with TECHNISCHE UNIVERSITAT DRESDEN (TU DRESDEN)
Technische Universität Dresden (TUD), as a University of Excellence, is one of the leading and most dynamic research institutions in the country. Founded in 1828, today it is a globally oriented, regionally anchored top university as it focuses on the grand challenges of the 21st century. lt develops innovative solutions…
AI Software Solutions Engineer at Intel
Job Description Intel Datacenter and AI Group focuses on developing disruptive solutions that will shape the future of AI and Deep Learning computing. Led by top technologists and successful entrepreneurs, our vision is to take AI processing from its current limits to the peak of its potential. We see challenges…
Real-time Analytics News for Week Ending September 2
In this week’s real-time analytics news: Google Cloud’s Next ’23 conference saw many announcements from the company and its partners. Keeping pace with news and developments in the real-time analytics market can be a daunting task. We want to help by providing a summary of some of the important real-time…
This week in enterprise: Google Cloud sharpens its AI story at Next, and earnings signal an improving tech outlook
As summer effectively comes to an end, enterprise tech companies continued to forget August is supposed to be for vacations — but that’s not such a bad thing. This past week Google mounted a renewed offensive in artificial intelligence at its Next cloud event, sharpening its message and its product…
Using tool of charmm2gmx – User discussions
Brief description of tools/files:Charmm2gmx 1.0.2J. Chem. Inf. Model. 2023, 63, 14, 4246–4252awacha.gitlab.io/charmm2gmx/index.html Link:Contact person (JieChen and chenjiedlpu@163.com): How the work has been tested/reviewed:Hi Proffessor Justin, I found good tool for convert CHARMM stream files produced by CGenFF to GROMACS topologies, named Charmm2gmx. It likes the python file of charmm2gmx.py. But…
PDBe Coordinator – Hinxton, United Kingdom – EMBL
Description Your role This position is for an ambitious scientist, with a passion for open data, who wants to impact the development of key resources for global, public 3D-structure data. We need an inspiring and engaging person who understands the importance of teamwork and is focused on the delivery of…
jsteffan/pytorch-sig-testing-copr – Fedora Discussion
Description Continuous builds initiated by packit service. For more info check out packit.dev/ Installation Instructions You can check out the upstream project git@gitlab.com:fedora/sigs/ai-ml/pytorch/rpms.git to find out how to consume these builds. This copr project is created and handled by the packit project (packit.dev/). Active Releases The following unofficial repositories are…
European Bioinformatics Institute | EMBL-EBI hiring Coordinator for Protein Data Bank in Europe (PDBe) in Hinxton, England, United Kingdom
We are looking for an outstanding individual to coordinate the Protein Data Bank in Europe Team (PDBe; pdbe.org) team at the European Bioinformatics Institute (EMBL-EBI). This role is central for delivering data services that significantly impact on how the scientific community uses bio-macromolecular structure data now and in the future….
Senior Research Scientist – Bioinfomatician (Cancer Science Institute) (JR:21694) job with NATIONAL UNIVERSITY OF SINGAPORE
Job Description The position of Postdoctoral Fellow – with an emphasis on computational cancer genomics – is immediately available at the Cancer Science Institute of Singapore (a part of National University of Singapore). The Postdoctoral Fellow will work with the laboratories of Professor Ashok Venkitaraman, on a project studying the evolution…
Comparative analysis of carbapenem-resistant K. pneumoniae
Introduction The worldwide spread of Klebsiella pneumoniae is a major global public health threat.1,2 K. pneumoniae is an opportunistic pathogen that colonizes the human gut and respiratory tract and possibly causes infection in immunocompromised hosts. Gut colonized K. pneumoniae is one of the important pathogens causing nosocomial infections, although the…
phbuilder: a tool for efficiently setting up constant pH molecular dynamics simulations in GROMACS,ChemRxiv
phbuilder: a tool for efficiently setting up constant pH molecular dynamics simulations in GROMACS ChemRxiv Pub Date : 2023-08-11 , DOI: 10.26434/chemrxiv-2023-rdhjn Anton, Jansen, Noora, Aho, Gerrit, Groenhof, Pavel,…
Posit Connect Shiny App using Gitlab Private Repo – Posit Connect
I have a working Shiny App in rstudio, which installs all packages just fine, including a gitlab private repo and a github repo. Locally, this works using renv. Publishing this to Posit Connect, we had to replace the github public package, but the gitlab private repo is required. I’ve tried…
Full Stack Web Developer at European Molecular Biology Laboratory (EMBL)
Advertised Grade-Grading: Grade 5 – 6 (monthly salary starting at £3,090 – £3,456 after tax) plus other paid benefits depending on personal circumstances Contract Duration-Length of Time (years/months): 3 years (renewable upto 9 years) About the team/job We are looking for an enthusiastic Full Stack Developer to join the EMBL-EBI…
Research Fellow, Bioinformatician (Cancer Science Institute) job with NATIONAL UNIVERSITY OF SINGAPORE
Job Description (JR:18151) The position of Postdoctoral Fellow – with an emphasis on computational cancer genomics – is immediately available at the Cancer Science Institute of Singapore (a part of National University of Singapore). The Postdoctoral Fellow will work with the laboratories of Professor Ashok Venkitaraman, on a project studying the evolution of…
The Linux Foundation Announces Keynote Speakers for Open Source Summit Europe 2023
Global visionaries headline the premier open source event in Europe, covering the most pivotal topics and technologies at the core of open source. SAN FRANCISCO, Aug. 10, 2023 /PRNewswire/ — The Linux Foundation, the nonprofit organization enabling mass innovation through open source, today announced the keynote speakers for Open Source Summit…
What to expect during Google Cloud Next: Join theCUBE August 29-31
Alphabet Inc. is the global leader in digital ad revenue and the top search engine in the world, yet its cloud division remains firmly entrenched in third place behind Amazon Web Services Inc. and Microsoft Corp. for market share. Could that picture soon change? This is one of several key…
How can I use OpenAPI to provide pipeline results to a pre-merge commit when GitLab enables merge request pipelines? – GitLab CI/CD
Jou7 August 7, 2023, 1:17am 1 Hi. How can I use OpenAPI to provide pipeline results to a pre-merge commit when GitLab enables merge request pipelines? I want to use external jenkins to verify the merged results, but I have no way to report the results to gitlab. Thanks for…
Sensing the DNA-mismatch tolerance of catalytically inactive Cas9 via barcoded DNA nanostructures in solid-state nanopores
DNA-nanostructure barcodes To observe that the CRISPR–dCas9 system is specific enough to detect the single base pair, DNA constructs with different ‘barcodes’ plus an overhang sequence for dCas9 was created. The DNA construct was synthesized from pairing a linearized 7.2 kbp single-stranded (ss) M13mp18 DNA (GuildBiosciences) with 190 complementary oligonucleotides via…
The Global Artificial Intelligence (AI) In Marketing Market
New York, July 31, 2023 (GLOBE NEWSWIRE) — Reportlinker.com announces the release of the report “Global Artificial Intelligence In Marketing Market Size, Share & Industry Trends Analysis Report By Technology, By End User, By Component, By Application, By Regional Outlook and Forecast, 2023 – 2030” – www.reportlinker.com/p06481149/?utm_source=GNW The use of…
Bioinformatics Analyst III, Spatial Biology, CGR job with Frederick National Laboratory for Cancer Research
Bioinformatics Analyst III, Spatial Biology, CGR Job ID: req3667Employee Type: exempt full-timeDivision: Clinical Research ProgramFacility: Rockville: 9615 MedCtrDrLocation: 9615 Medical Center Drive, Rockville, MD 20850 USA The Frederick National Laboratory is a Federally Funded Research and Development Center (FFRDC) sponsored by the National Cancer Institute (NCI) and operated by Leidos…
Exact Sciences hiring Site Reliability Engineer, Bioinformatics in United States
Position OverviewExact Sciences is revolutionizing the cancer diagnostics space and is now looking for another Site Reliability Engineer (SRE) to join its incredible team. SREs at Exact Sciences support our mission by pushing out new features and applications every day. The Site Reliability Engineering team constantly practices the DevOps mindset…
[PATCH] Input: ads7846 – don’t set ABS_PRESSURE when min == max
[PATCH] Input: ads7846 – don’t set ABS_PRESSURE when min == max * [PATCH] Input: ads7846 – don’t set ABS_PRESSURE when min == max @ 2023-07-27 15:19 Benjamin Bara 2023-07-27 20:39 ` Dmitry Torokhov 0 siblings, 1 reply; 3+ messages in thread From: Benjamin Bara @ 2023-07-27 15:19 UTC (permalink /…
Site Reliability Engineer, Bioinformatics at Exact Sciences
Position Overview Exact Sciences is revolutionizing the cancer diagnostics space and is now looking for another Site Reliability Engineer (SRE) to join its incredible team. SREs at Exact Sciences support our mission by pushing out new features and applications every day. The Site Reliability Engineering team constantly practices the DevOps…
Research Fellow – Bioinformatician (Cancer Science Institute) – Dr Jason Pitt’s Lab job with NATIONAL UNIVERSITY OF SINGAPORE
Job Description The mission of Cancer Science Institute (National University of Singapore) is to better understand the causes of human cancer across Asia, and thereby improve its detection, treatment, and prevention. Our outstanding researchers and exceptional facilities create an energetic environment for ground-breaking science and world-class training. The position of…
JetBrains Updates IDEs With AI
JetBrains has released its regular update of its IDEs including IntelliJ IDEA, WebStorm, RubyMine, PyCharm, GoLand, DataSpell, DataGrip, and other tools, such as the latest 2023.3 version of Datalore Enterprise. The headline improvement in all of them is a new AI Assistant. This is still in limited access, and…
API mocking with OpenAPI
An API mock is a piece of code that allows a developer, with the help of a mock server, to have working API endpoints without writing the code behind it. Designed by vectorjuice / Freepik API mocking has many useful applications: speeds up backend and frontend development since the two…
Bioinformatics Software Engineer II – Memorial Sloan Kettering Cancer Center
Pay Range: $96,800.00-$154,900.00 Company Overview: The people of Memorial Sloan Kettering Cancer Center (MSK) are united by a singular mission: ending cancer for life. Our specialized care teams provide personalized, compassionate, expert care to patients of all ages. Informed by basic research done at our Sloan Kettering Institute, scientists across…
Bioinformatics Software Engineer II in New York, NY for Memorial Sloan Kettering Cancer Center
Details Posted: 23-Jul-23 Location: New York, New York Salary: Open Categories: Operations Pay Range $96,800.00-$154,900.00 Company Overview The people of Memorial Sloan Kettering Cancer Center (MSK) are united by a singular mission: ending cancer for life. Our specialized care teams provide personalized, compassionate, expert care to patients of all ages….
Enterprise-ready generative AI models go GA in Vertex AI
Generative AI continues to develop at a blistering pace, making it more important than ever that organizations have access to enterprise-ready capabilities to help them leverage this disruptive technology. Harnessing the power of decades of Google’s research, innovation, and investment in AI, Google Cloud continues to make generative AI available…
Problem installing Dependencies for R – JupyterHub
I am trying to set up an R env and install base packages for all users. The package lives on gitlab and I am using the following to install it. What happens is that during the deployment everything works fine and I can see this package being built and end…
spring boot – How to generate an openapi.yaml file from source code within a GitLab pipeline?
I have created an openapi rest controller in Java Spring Boot. Now I would like to check that openapi spcification with a API linter like “Spectral” within a Gitlab-CI. Therefore I need a openapi.yaml or openapi.json file as input for that API-linter command line tool. So, how to create that…
RStudio freezes when using CTRL+SHIFT+F10 to restart session after pushing commits using GIT – RStudio IDE
I am facing an annoying situation using RStudio IDE, I think it is a bug. Context: a project (Rproj) and using GIT+GITLAB as version control. Problem: whenever I push one or more commits (even very small ones) from the Rstudio IDE, and latter, restart the R session, the process freezes….
gromacs 2023.2 – Download, Browsing & More
gromacs 2023.2 – Download, Browsing & More | Fossies Archive “Fossies” – the Fresh Open Source Software Archive Contents of gromacs-2023.2.tar.gz (12 Jul 16:21, 41930578 Bytes) About: GROMACS performs molecular dynamics, i.e. simulates the Newtonian equations of motion for systems with hundreds to millions of particles (designed for biochemical molecules…
test dependency ruby-gitaly-proto doesn’t exist
On Thu, 30 Mar 2023 19:19:44 +0200 Paul Gevers <elb…@debian.org> wrote: > autopkgtest [15:18:15]: test command1: preparing testbed > Reading package lists… > Building dependency tree… > Reading state information… > Correcting dependencies…Starting pkgProblemResolver with broken count: 1 > Starting 2 pkgProblemResolver with broken count: 1 > Investigating (0) autopkgtest-satdep:amd64…
Residue 42 named TYR of a molecule in the input file was mapped to an entry in the topology database – User discussions
GROMACS version:2023GROMACS modification: YesHere post your questionkayode@kayode:~/Documents/Carrot/scolimoside$ gmx pdb2gmx -f REC.pdb -ignh🙂 GROMACS – gmx pdb2gmx, 2023 (-: Executable: /usr/local/gromacs/bin/gmxData prefix: /usr/local/gromacsWorking dir: /home/kayode/Documents/Carrot/scolimosideCommand line:gmx pdb2gmx -f REC.pdb -ignh Select the Force Field: From ‘/usr/local/gromacs/share/gromacs/top’: 1: AMBER03 protein, nucleic AMBER94 (Duan et al., J. Comp. Chem. 24, 1999-2012, 2003) 2:…
Evaluation of AlphaFold-Multimer prediction on multi-chain protein complexes
Abstract Motivation: Despite near-experimental accuracy on single-chain predictions, there is still scope for improvement among multimeric predictions. Methods like AlphaFold-Multimer and FoldDock can accurately model dimers. However, how well these methods fare on larger complexes is still unclear. Further, evaluation methods of the quality of multimeric complexes are not well…
GWAS Catalog at European Molecular Biology Laboratory (EMBL)
About the team/job We are looking for an experienced Bioinformatician Developer to join the GWAS Catalog development team within the Samples, Phenotypes and Ontologies team. You’ll be working on the GWAS Catalog Summary Statistics Infrastructure, and you’ll have the opportunity to influence the design and development of the system to…
Aaron Reams – Software Architect
Aaron Reams Software Architect / Cloud Engineer Raleigh, North Carolina • 919-987-6141 • reamer@gmail.com • linkedin.com/in/aaronreams • aaronreams.com Software Architect & Cloud Engineer with over 20 years of experience using C#, Go, Angular and React developing innovative solutions to complex problems on Amazon Web Services (AWS), Google Cloud (GCP), Microsoft…
Production Project Leader job with EMBL EBI
We want a talented project leader to develop and manage the Ensembl production infrastructure and release cycles for our current and next generation website. Our infrastructure is under active redevelopment and offers an exciting opportunity for you to be at the forefront of its development and release. Our new infrastructure…
Cancer Immunogenomics Bioinformatics Analyst – BayOne Solutions
Role: Cancer Immunogenomics Bioinformatics AnalystLocation: REMOTE ( need someone who can support in PST hours)Type: 6+ months Rate : $50/Hr. W2 Details: The Cancer Immunogenomics (CIgx) team is seeking a contract bioinformatics analyst with ~2+ years of experience (either in industry or an academic research lab during a degree) to…
The Global Automated Machine Learning Market size is
New York, June 20, 2023 (GLOBE NEWSWIRE) — Reportlinker.com announces the release of the report “Global Automated Machine Learning Market Size, Share & Industry Trends Analysis Report By Application, By Offering, By Vertical, By Regional Outlook and Forecast, 2023 – 2029” – www.reportlinker.com/p06469088/?utm_source=GNW This agility enables faster experimentation and iteration…
CMake is for everyone :-) – Developers discussions
In the June 14th, Developer bi-weekly videoconference, several people indicated that they are reluctant to review changes to the GROMACS CMake infrastructure due to lack of familiarity. We actually face an alarming situation for project health when we can’t find 3 project participants willing and able to participate in merge…
Increasing and excesive use of memory using OpenGL and AMD GPU – User discussions
swong June 14, 2023, 11:52am 1 GROMACS version: 2023.1GROMACS modification: Yes/NoHere post your question: I successfully compiled on a AMD/GPU node cluster. Each node has 8 gpus. So I’m running 8 simultaneous simulations on each node. As the simulations proceed the memory usage keeps increasing until some of the jobs…
Vertex now open for everyone. What is it?
Google has made an important announcement regarding its generative AI support in Vertex AI, the company’s robust machine learning platform. This development signifies a significant milestone as these AI capabilities are now generally available to developers. With models such as PaLM 2, Imagen, and Codey at the core, Vertex AI…
Google Opens Access to Vertex AI Generative AI
on June 12, 2023 at 1:00 pm Google has opened access to the generative AI support for its machine learning platform Vertex AI after completing beta testing earlier this year. Businesses and other enterprises can now embed Vertex’s generative AI features into their own software, using the foundation models in…
Google’s Generative AI Platform “Vertex AI” Now Available
Google recently announced that their machine learning technology, known as “Vertex AI” is now generally available. Google’s advanced generative AI platform, Vertex AI, offers extensive tools and capabilities for designing and deploying machine learning models. Vertex AI provides developers with access to Google’s large language model, PaLM 2, as well…
Google’s Generative AI Platform “Vertex” Now Available
Google Cloud’s Vertex AI is making waves in the world of artificial intelligence with the announcement that its generative AI support is now available for general use. This machine learning platform as a service (ML PaaS) product offers a full ecosystem of tools to help builders tune, deploy, and govern…
dockerfile – How to run pytorch on gitlab-runner via docker?
I am learning gitlab ci/cd with a AI/Deep learning application in mind. But I wasn’t sure how pytorch could be used in a gitlab-runner. According to documentation: The following multi-platform Docker images are available: gitlab/gitlab-runner:latest based on Ubuntu. But my applications are based on the pytorch official image. I searched…
Google Cloud now offering free AI courses
Google (NASDAQ: GOOGL) has launched a series of free online courses to introduce users to generative artificial intelligence (AI) as the AI arms race with fellow Big Tech firms heats up. The search engine giant launched the courses this week through Google Cloud. They range from the fundamentals of large language models to…
A Game-Changer for Modern Software Development
Introduction With artificial intelligence (AI) taking center stage in the world of technology over the past few months, developers require cutting-edge tools and platforms that enable them to stay ahead of the curve. Google Cloud is at the forefront of AI-driven innovation, offering a comprehensive suite of generative AI solutions…