Tag: gitlab
Google Cloud now offering free AI courses
Google (NASDAQ: GOOGL) has launched a series of free online courses to introduce users to generative artificial intelligence (AI) as the AI arms race with fellow Big Tech firms heats up. The search engine giant launched the courses this week through Google Cloud. They range from the fundamentals of large language models to…
A Game-Changer for Modern Software Development
Introduction With artificial intelligence (AI) taking center stage in the world of technology over the past few months, developers require cutting-edge tools and platforms that enable them to stay ahead of the curve. Google Cloud is at the forefront of AI-driven innovation, offering a comprehensive suite of generative AI solutions…
Google launches Secure AI Framework to help secure AI technology
Google has announced the launch of the Secure AI Framework (SAIF), a conceptual framework for securing AI systems. Google, owner of the generative AI chatbot Bard and parent company of AI research lab DeepMind, said a framework across the public and private sectors is essential for making sure that responsible…
Google’s Vertex AI Now Available for Generative AI Support
Google announced today that its generative AI support in Vertex AI, the company’s machine learning platform, is now generally available. Vertex AI offers developers access to Google’s models like PaLM 2, Imagen, and Codey, which can be used to generate and classify text, build multi-turn chat experiences, and create text…
Google’s Generative AI Platform Is Now Available To Everyone
Google announced the general availability (GA) of generative AI services based on Vertex AI, the Machine Learning Platform as a Service (ML PaaS) offering from Google Cloud. With the service becoming GA, enterprises and organizations could integrate the platform’s capabilities with their applications. PaLM 2 Language Model Google With this…
Comparison of Oxford Nanopore Technologies and Illumina MiSeq sequencing with mock communities and agricultural soil
Study sites Soils were collected from two different sites (ARDEC: Colorado State University’s Agricultural Research, Development and Education Center in Fort Collins, CO; and CPCRC: USDA Columbia Plateau Conservation Research Center in Pendleton, OR). At each site, four replicate plots of no-till corn (ARDEC) or no-till annual wheat (CPCRC) were…
Generative AI Support in Google’s Vertex AI Now Generally Available, Partners Benefit from Its Features
Google has revealed that generative AI support in Vertex AI, the company’s machine learning platform, is now generally available. The features draw from Google’s models, such as PaLM 2, Imagen, and Codey. With Vertex AI, developers can access PaLM’s features for text generation and classification, creating ChatGPT-like multi-turn chat experiences,…
Google Cloud makes generative AI support generally available in Vertex AI
Google LLC’s cloud unit today made several of the generative artificial intelligence tools in its Vertex AI product suite generally available. The move comes a month after the company first previewed the tools at its Google I/O conference. Vertex AI is a suite of cloud services that companies can use…
Helping businesses with generative AI
If you’re new to generative AI, don’t panic. Like any new business tool, it can seem intimidating at first. And like any new technology, there are fundamental questions you need to ask to get started—what business problems are we trying to solve? How will we measure success? Are my teams…
Google’s generative AI support in Vertex AI is now generally available
Google announced coming that its generative AI support in Vertex AI, The company’s instrumentality learning platform, is now mostly available. Based connected Google’s models for illustration PaLM 2, Imagen and Codey, Vertex AI offers developers entree to The PaLM’s features for generating and classifying text, building ChatGPT-like multi-turn chat experiences…
Google’s generative AI support in Vertex AI is now generally available
Google announced today that its generative AI support in Vertex AI, the company’s machine learning platform, is now generally available. Based on Google’s models like PaLM 2, Imagen and Codey, Vertex AI offers developers access to the PaLM’s features for generating and classifying text, building ChatGPT-like multi-turn chat experiences and…
Solid earnings beat and strong forecast sends GitLab’s stock soaring
GitLab Inc.’s stock was riding higher in extended trading today after the DevOps company posted strong first quarter results that topped expectations, offered a strong forecast for the coming quarter and raised its full-year guidance. The company reported a net loss for the quarter of $52.9 million, up from a…
We do Data Science, Big Data, Statistics, RStudio, Python, SPSS | Classes & Lessons | City of Toronto
We are a team of experts offering top-quality assignment writing services in the fields of Artificial Intelligence, Machine Learning, Data Science, Big Data, and Statistics. We have in-depth knowledge and experience in the following areas: AI: ✅ Natural Language Processing ✅ Computer Vision ✅ Robotics ✅ Deep Learning ✅ Neural…
busco id description
busco id description 0 Hi, I did a BUSCO analysis using lineage metazoa_odb10. Below is a snippet from my output, I am missing the column for gene ID description from my output. The metazoa_odb10 lineage dataset is missing the links_to_ODB10.txt file. So, I tried solutions from gitlab.com/ezlab/busco/-/issues/358 and thackl.github.io/BUSCO-gene-descriptions links….
Workshop: learn to code in GROMACS – Announcements
Hi,The workshop “Learn to code in GROMACS” will be held 7- 8 September 2023 In Stockholm. The aim is to provide attendees with the basis for coding in GROMACS and contributing to the GROMACS developer community. We will have lectures, Q&A sessions, and hands-on sessions with mentoring covering the following…
Bioinformatic Scientist, QDI Job Opening in Germantown, MD at QIAGEN
Overview At the heart of QIAGEN’s business is a vision to make improvements in life possible. We are on an exciting mission to make a real difference in science and healthcare. We are still the entrepreneurial company we started out as and have today achieved a size where we can…
Ensembl Production Project Leader at European Molecular Biology Laboratory (EMBL)
Contract Duration-Length of Time (years/months): 3 years (renewable up to 9 years) Contract Duration-Is this renewable to 9 years?: Yes About the team/job We want a talented project leader to develop and manage the Ensembl production infrastructure and release cycles for our current and next generation website. Our infrastructure is under…
6 Free API Documentation Tools
When developing an API, you need tools to document its features and functionality. Documentation helps users find out how to integrate and use the API. A quick Google search shows there are many documentation tools available online. Picking the right tool to optimize your workflow and produce helpful content can…
Enabling accurate and early detection of recently emerged SARS-CoV-2 variants of concern in wastewater
Wastewater sample collection, RNA extraction, and sequencing Houston Water collected and provided weekly 24-hour time-weighted composite influent (raw wastewater) samples from 39 wastewater treatment plants (WWTPs) in Houston covering a service area of approximately 580 miles2 and serving over 2.3 million people. In total, 2637 samples were analyzed. Untreated wastewater…
Research Fellow – Bioinformatician (Cancer Science Institute) job with NATIONAL UNIVERSITY OF SINGAPORE
Job Description (JR:18151) The position of Postdoctoral Fellow – with an emphasis on computational cancer genomics – is immediately available at the Cancer Science Institute of Singapore (a part of National University of Singapore). The Postdoctoral Fellow will work with the laboratories of Professor Ashok Venkitaraman, on a project studying the evolution of…
R Studio 2022 – Korea
At rstudio::conf(2022) our workshops featured hands-on exercises, discussions, and Q&A forums. This was an opportunity to meet, share, and collaborate with …In July, we wrapped up rstudio::conf(2022). Throughout the conference, we had an exciting array of workshops, an inspiring lineup of speakers, Birds of a …We are delighted to announce the rstudio::conf…
Lifebit hiring Bioinformatician (Remote – Nextflow Developer) in London, England, United Kingdom
At Lifebit, we carve our own path. So can you. We’re open source pioneers, innovators changing the world. Our driving mission: to revolutionise bioinformatics and biomedical data analysis forever. Our product, Lifebit CloudOS, is the world’s first federated genomics platform for unified, secure research over distributed big data. No one…
Combination of whole genome sequencing and supervised machine learning provides unambiguous identification of eae-positive Shiga toxin-producing Escherichia coli
1. Introduction Shiga toxin-producing Escherichia coli (STEC) are important zoonotic pathogens comprising more than 400 serotypes (Beutin and Fach, 2015). Pathogenic STEC strains such as enterohemorrhagic E. coli (EHEC) may cause hemorrhagic colitis (HC) and hemolytic-uremic syndrome (HUS) in humans. However, it remains difficult to fully define human pathogenic STEC…
Bioinformatics Analyst job with Cincinnati Children’s- Bioinformatics
Expected Starting Salary Range: 27.60 – 35.28 SUBFUNCTION DEFINITION: Bioinformatics applies biology, computer science, data science, and statistics to analyze and interpret biological and clinical data. REPRESENTATIVE RESPONSIBILITIES Management and “wrangling” of genomic data. Help manage Xenopus genomes and participate in genome annotation and gene nomenclature. Perform gene orthology…
eTeam hiring Senior Bioinformatician in Canada
Title: Sr. Bioinformatician Location: Remote Duration:12+ Months JOB DESCRIPTION This contract position provides the opportunity to implement and deliver bioinformatics tools for a wide range of applications working with proteomics. The candidate will join a team focused on infrastructure developments for proteomics and collaboration with many research groups in…
GitLab, Google Cloud Combine for AI-Assisted Platform Tools
DevSecOps platform maker GitLab has announced an extension of its partnership with Google Cloud to bring new — and some experimental — AI-based options to enterprises. The two companies will deploy Google Cloud’s customizable foundation models and open generative AI infrastructure to provide users with AI-assisted features located within the…
Real-time Analytics News for Week Ending May 6
In this week’s real-time analytics news: The NSF, several other federal agencies, higher education institutions, and other stakeholders will invest $140 million to establish seven new National Artificial Intelligence Research Institutes (AI Institutes). Keeping pace with news and developments in the real-time analytics market can be a daunting task. We…
GitLab and Google Cloud partner to expand AI-assisted capabilities, CIOSEA News, ETCIO SEA
GitLab Inc., the most comprehensive, scalable enterprise DevSecOps platform for software innovation, and Google Cloud today announced an extension of its strategic partnership to deliver secure AI offerings to the enterprise. GitLab is trusted by more than 50% of the Fortune 100 to secure and protect their most valuable assets,…
Citing data privacy, GitLab syncs with Google generative AI
GitLab‘s partnership with Google for generative AI looks to assuage enterprise concerns about data privacy, but many open questions about licensing and other risks remain. The partnership news this week comes amid a tidal wave of IT products that incorporate generative AI built on large language models (LLM). Such…
GitLab Allies With Google to Bring AI to DevOps
GitLab extended its alliance with Google as part of an effort to bring more generative artificial intelligence (AI) capabilities to DevOps workflows. The GitLab suite of software-as-a-service (SaaS) applications already reside on the Google cloud platform to provide GitLab with the foundation of data required to train those AI models….
GitLab and Google Cloud Partner to Expand AI-Assisted Capabilities with Customizable Gen AI Foundation Models
GitLab AI-powered security feature to leverage Google Cloud’s foundation models to empower customers to identify and remediate vulnerabilities more efficiently while maintaining privacy standards SAN FRANCISCO, May 2, 2023 /PRNewswire/ — GitLab Inc., the most comprehensive, scalable enterprise DevSecOps platform for software innovation, and Google Cloud today announced an extension of…
GitLab and Google Cloud partner to power generative AI-assisted DevSecOps features
DevSecOps company GitLab Inc. today announced an expansion of its partnership with Google Cloud to deliver new generative artificial intelligence-powered features for developers directly within its platform while maintaining security and privacy standards. Generative AI is the technology that underlies OpenAI LP’s ChatGPT chatbot and Google Bard. It’s capable of…
Bioinformatics Analyst – Astrix
Bioinformatics Analyst Location: South San Francisco, California Type: Contract Job #39364 We are seeking a highly motivated Bioinformatics Analyst to work on the analysis and interpretation of high-throughput genomic and clinical data, to investigate immune cell crosstalk within the tumor microenvironment. This individual will be affiliated primarily with developing software to simulate…
Research Fellow, Bioinformatician, Cancer Science Institute, Dr Jason Pitt’s Lab job with NATIONAL UNIVERSITY OF SINGAPORE
Job Description The position of Postdoctoral Fellow with an emphasis on cancer genomics and bioinformatics is immediately available in the laboratory of Dr. Jason Pitt, which integrates data science and biological expertise to facilitate precision oncology. The Pitt Laboratory achieves this by developing cutting-edge software that allows rapid interrogation and…
Google Cloud Introduces Security AI Workbench for Faster Threat Detection and Analysis
Apr 25, 2023Ravie LakshmananArtificial Intelligence / Threat Detection Google’s cloud division is following in the footsteps of Microsoft with the launch of Security AI Workbench that leverages generative AI models to gain better visibility into the threat landscape. Powering the cybersecurity suite is Sec-PaLM, a specialized large language model (LLM)…
The Bioconductor project: Installing Bioconductor packages
Last updated on 2023-04-18 | Edit this page Estimated time NA minutes Expand All Solutions Questions How do I install Bioconductor packages? How do I check if newer versions of my installed packages are available? How do I update Bioconductor packages? How do I find out the name of packages…
R Studio 2023 – Korea
At rstudio::conf(2023) our workshops featured hands-on exercises, discussions, and Q&A forums. This was an opportunity to meet, share, and collaborate with …In July, we wrapped up rstudio::conf(2023). Throughout the conference, we had an exciting array of workshops, an inspiring lineup of speakers, Birds of a …We are delighted to announce the rstudio::conf…
Markdown, HTML, PlantUML, LaTeX, Diagrams, Open API, Mermaid
Extend Confluence functionality with Markdown, LateX, AsciiDoc, Open API / Swagger, and Diagram Macros. Insert Markdown, LaTex, AsciiDocs, and arbitrary HTML from inline text, Confluence Attachments, or Remote URLs Insert Open API / Swagger API Specs Insert text based Diagrams like PlantUML, GraphViz, Mermaid, and more Render Markdown from public…
gitlab.com/sagemath/sage is stuck at 9.8.rc0
On Thu, Mar 30, 2023 at 9:27 AM Sébastien Labbé <sla…@gmail.com> wrote: > I noticed that > gitlab.com/sagemath/sage > is stuck at 9.8.rc0. > > Is it possible to continue to update this gitlab repo at each release of a development version as it was done for years for the github and gitlab repo while…
The Linux Foundation Announces Keynote Speakers for Open Source Summit North America 2023
Premier event for open source developers and community contributors will feature visionary speakers from EleutherAI, Discover Financial Services, Google, Province of British Columbia, NASA Jet Propulsion Laboratory and more, covering the most pivotal topics and technologies at the core of open source. SAN FRANCISCO, March 29, 2023 /PRNewswire/ — The Linux Foundation, the…
Issue building in n8n – Questions
Describe the issue/error/question n8n build with docker image custom fails either withmissing openapi.ymlor during the build in on the clean up step rm-rf … What is the error message (if any)? the openapi issue 8bb03 “{ file: ‘LicenseManager.js’, function: ‘log’ }”Error: ENOENT: no such file or directory, open ‘/usr/local/lib/node_modules/n8n/packages/cli/dist/PublicApi/v1/openapi.yml’at Object.openSync…
Research Assistant (Bioinformatician) (Cancer Science Institute, NUS) job with NATIONAL UNIVERSITY OF SINGAPORE
Job Description The position of Research Assistant (Bioinformatician) is immediately available in the Genome and Data Analytics Core (GeDaC) at the Cancer Science Institute of Singapore (CSI) — a part of National University of Singapore. The CSI GeDaC is building a platform to facilitate the automated processing and analysis of…
R Studio 2023 – BjAv
At rstudio::conf(2023) our workshops featured hands-on exercises, discussions, and Q&A forums. This was an opportunity to meet, share, and collaborate with …In July, we wrapped up rstudio::conf(2023). Throughout the conference, we had an exciting array of workshops, an inspiring lineup of speakers, Birds of a …We are delighted to announce the rstudio::conf…
GROMACS-2023 throws an error if a user wants to use different from the user who built it – User discussions
itandy March 8, 2023, 1:24pm 1 GROMACS version: 2023 GROMACS modification: No Here post your question I am having problems getting GROMACS-2023 to work for users other than the one who built it. If a user other than the one who built the binary calls gmx_mpi, the following error message…
Version control using Git and RStudio
Requirements: Programming skills with any kind of programming language, e.g. course Introduction to R. Course overview: “Version control using Git and RStudio” provides a foundation for applying version control in your daily work. Git is a modern version control environment. Classical applications involve Gitlab and GitHub. The course is designed…
XSS Vulnerability Discovered in Backstage Software Catalog
Backstage, the open source internal developer portal created by Spotify, has been adopted by American Airlines, Fidelity Investments, Netflix, VMware and other enterprises. However, it’s traveled a rocky road in recent months. In November, Oxeye, a cloud native security company, discovered a serious JavaScript vulnerability in the platform engineering tool….
OpenAPI Jobs
Jobs 1 to 25 of 32 City of London, London, United KingdomHybrid / WFH Options Fimatix UK Ltd Essential Technical Skills Language – JavaScript, NodeJS, Typescript Framework – NestJS/Express/Microservices Testing – Jest/Mocha/Cypress/React testing Library API OpenAPI/GraphQL/GRPC Messaging – AMQP/RabbitMQ/Kafka Data Storage – MongoDB/Mongoose…
R Studio 2022 – C.Toonkorbj
At rstudio::conf(2022) our workshops featured hands-on exercises, discussions, and Q&A forums. This was an opportunity to meet, share, and collaborate with …In July, we wrapped up rstudio::conf(2022). Throughout the conference, we had an exciting array of workshops, an inspiring lineup of speakers, Birds of a …We are delighted to announce the rstudio::conf…
What is the recommended value for tau-p and tau-t with GROMACS2023.0 when using PR and NH – User discussions
GROMACS version: 2023.0GROMACS modification: No Hey there, After consulting the GROMACS 2023 documentationand this post on GitLab Increase the default values of nsttcouple and nstpcouple (!2624) · Merge requests · GROMACS / GROMACS · GitLab, I noticed that if the value -1 is used for nsttcouple and nstpcouple, their default…
Mobile cryptocurrency wallet API with Swagger/OpenAPI
A mobile backend project practising API-first development and API documentation with Swagger/OpenAPI using JHipster, Spring Boot, and Angular. Cryptocurrency API shown is Nxt, but later I added Bitcoin, Ethereum, and Stellar. Compartilhe esse Portfólio chesslover Quezon City, Philippines Sobre Mim 24 years senior developer experience, with the last 5 years…
XenoCell fq.gz output files
XenoCell fq.gz output files 0 Hi, I followed the tutorial of XenoCell (see below) and extracted the graft barcodes by using hgmm_5k_v3 example dataset. I got 3 output files (cellular_barcodes.txt, fq_barcode.fq.gz, and fq_transcript.fq.gz) under graft folder. Does anyone know how to convert these files and feed them into 10x genomic…
Bioinformatics Analyst I, Biostatistics Branch, CGR
Bioinformatics Analyst I, Biostatistics Branch, CGR – Hybrid Remote/Onsite Job ID: req3372Employee Type: exempt full-timeDivision: Clinical Research ProgramFacility: Rockville: 9609 MedCtrDrLocation: 9609 Medical Center Dr, Rockville, MD 20850 USA The Frederick National Laboratory is a Federally Funded Research and Development Center (FFRDC) sponsored by the National Cancer Institute (NCI) and…
A 10-year microbiological study of Pseudomonas aeruginosa strains revealed the circulation of populations resistant to both carbapenems and quaternary ammonium compounds
P. aeruginosa bacterial strains Reference strains Four well-described and genome-available reference strains were used in the present study, ATCC27853 and ATCC15442, obtained from the American Type Culture Collection (ATCC), and PAO1 and PA14, from the collection of Institut Pasteur (Paris, France). Strain ATCC15442 is recommended for disinfectant susceptibility testing44, strain…
gromacs 2023 – Download, Browsing & More
gromacs 2023 – Download, Browsing & More | Fossies Archive “Fossies” – the Fresh Open Source Software Archive Contents of gromacs-2023.tar.gz (6 Feb 19:24, 41863526 Bytes) About: GROMACS performs molecular dynamics, i.e. simulates the Newtonian equations of motion for systems with hundreds to millions of particles (designed for biochemical molecules…
Research Fellow, Bioinformatician, Cancer Science Institute, Dr Jason Pitt’s Lab 1 job with NATIONAL UNIVERSITY OF SINGAPORE
Job Description The position of Postdoctoral Fellow with an emphasis on cancer genomics and bioinformatics is immediately available in the laboratory of Dr. Jason Pitt, which integrates data science and biological expertise to facilitate precision oncology. The Pitt Laboratory achieves this by developing cutting-edge software that allows rapid interrogation and…
Managing tracked issues – Developers discussions
At the recent biweekly developers’ conversation, concerns were again raised about managing items in the GitLab Issue Tracker. This has been a recurring topic for several years, but no decisions or actions seem to result from the conversations. If I am mistaken, and some new guidelines or decisions have been…
Opening for a PLUMED developer position – LAMMPS
Dear all, I am sending this email here in case someone in the LAMMPS community is interested. We are opening a full-time position for PLUMED software development based at SISSA (Trieste, Italy). The opening will be for a “Tecnologo” (EP level) position funded by the “Centro Nazionale di Ricerca in…
Research Fellow, Bioinformatician (Cancer Science Institute of Singapore) job with NATIONAL UNIVERSITY OF SINGAPORE
Job Description The position of Postdoctoral Fellow (PDF) — with an emphasis on computational cancer genomics — is immediately available at The Cancer Science Institute of Singapore (a part of The National University of Singapore). The postholder will work with the laboratories of Prof. Ashok Venkitaraman, on a project studying the…
Research Fellow, Bioinformatician, Cancer Science Institute job with NATIONAL UNIVERSITY OF SINGAPORE
Job Description The position of Postdoctoral Fellow (PDF) in computational cancer genomics is immediately available at The Cancer Science Institute of Singapore (The National University of Singapore). This PDF will lead a newly funded project in the laboratory of Dr. Jason Pitt that will explore how germline genetics and cell-of-origin…
REPACK Downloadbotoracleperfectworldindonesia
REPACK Downloadbotoracleperfectworldindonesia Download -os.. coub.com/stories/2936734-_hot_-downloadbotoracleperfectworldindonesia -fake.. coub.com/stories/2936734-_hot_-downloadbotoracleperfectworldindonesia minimec4 n26f6fcbc5 trello.com/c/a6zy0OlM/39-hot-downloadbotoracleperfectworldindonesia. www.kaggle.com/bacacontdus/downloadbotoracleperfectworldindonesia-rajiv dawda dice: www.kaggle.com/bacacontdus/downloadbotoracleperfectworldindonesia-manggil – 1 – – 1 – -. imgur.com/a/wdjdVLp. qidiko dice: imgur.com/a/wdjdVLp homaiseng d4cb998c0f www.kaggle.com/bacacontdus/downloadbotoracleperfectworldindonesia-kev-will ntice:. jidiko dice: imgur.com/a/wdjdVLp jidiko dice: imgur.com/a/wdjdVLp forcade da8766f544 www.kaggle.com/bacacontdus/downloadbotoracleperfectworldindonesia-gitlab skankbrad dice: gitlab.com/bacacontdus/downloadbotoracleperfectworldindonesia-rajiv. janbeld8d87d4 trello.com/c/mXiz7RJL/45-hot-downloadbotoracleperfectworldindonesia-rajiv/. ntice: gitlab.com/bacacontdus/downloadbotoracleperfectworldindonesia-rajiv-1. …
JUPYTERLAB_SETTINGS_DIR defaults to JupyterHub root directory – JupyterHub
tisbam December 5, 2022, 2:34pm #1 Hi, I have setup Jupyterhub on a dedicated server : venv in /opt/jupyterhub Gitlab / Local authenticator with home directories automatically created Traefik proxy Default to /lab Is it the standard that the started jupyter server for each user looks for the config in…
Bioinformatics Training Project Manager at European Molecular Biology Laboratory (EMBL)
About the team/job Are you passionate about computational training in life sciences and wish to focus your career on the management and coordination of training programs? We are looking for a team member who will coordinate a new multi-organization project (BioNT) funded by the European Commission, embedded in the Data…
Research Scientist, Bioinformatician, Cancer Science Institute 1 job with NATIONAL UNIVERSITY OF SINGAPORE
JOB DESCRIPTION Analyze and integrate various NGS data Build and reproduce pipelines to process all types of DNA and RNA sequencing data Maintain all source code within Git and Dockerize all pipeline components Liaise with the Scaling Unit to convert pipelines into scalable workflows To…
Research Assistant, Bioinformatician / Cancer Science Institute, NUS job with NATIONAL UNIVERSITY OF SINGAPORE
Job Description The position of Research Assistant (Bioinformatician) is immediately available in the Genome and Data Analytics Core (GeDaC) at the Cancer Science Institute of Singapore (CSI) — a part of National University of Singapore. The CSI GeDaC is building a platform to facilitate the automated processing and analysis of…
A Standardized, Specification-Driven API Lifecycle
Transcript Lane: I’d like to share with you a high level view of why API specifications matter. How OpenAPI, AsyncAPI, JSON Schema and others are helping us standardize and deliver API lifecycle in a way that the machines understand. Also, allows us humans to better communicate, collaborate, and move forward…
Porting GROMACS Across Heterogeneous Architectures
Porting GROMACS Across Heterogeneous Architectures In this second episode about GROMACS, one of the world’s most widely used open source molecular dynamics (MD) applications, we explore the quest to simplify portable, performant programming with Erik Lindahl, Biophysics Professor at Stockholm University & KTH Royal Institute of Technology, and Roland Schulz,…
Predicting the structure of large protein complexes using AlphaFold and sequential assembly
Abstract AlphaFold and AlphaFold-multimer can predict the structure of single- and multiple chain proteins with very high accuracy. However, predicting protein complexes with more than a handful of chains is still unfeasible, as the accuracy rapidly decreases with the number of chains and the protein size is limited by the…
Senior Bioinformatics Engineer, remote in Marlborough, MA at Quest Diagnostics
Look for more than answers. At Quest, we are on a continuous journey of discovery and development. It’s this attitude that has made us an industry leader and the #1 Diagnostic Lab in the US. For those joining us, we offer exciting and fast-moving career opportunities where you can affect…
LIMS Developer, Bioinformatics, remote at Quest Diagnostics
Look for more than answers. At Quest, we are on a continuous journey of discovery and development. It’s this attitude that has made us an industry leader and the #1 Diagnostic Lab in the US. For those joining us, we offer exciting and fast moving career opportunities where you can…
Petabase-scale sequence alignment catalyses viral discovery
Serratus alignment architecture Serratus (v0.3.0) (github.com/ababaian/serratus) is an open-source cloud-infrastructure designed for ultra-high-throughput sequence alignment against a query sequence or pangenome (Extended Data Fig. 1). Serratus compute costs are dependent on search parameters (expanded discussion available: github.com/ababaian/serratus/wiki/pangenome_design). The nucleotide vertebrate viral pangenome search (bowtie2, database size: 79.8 MB) reached processing rates…
gromacs 2021.5 – Download, Browsing & More
gromacs 2021.5 – Download, Browsing & More | Fossies Archive “Fossies” – the Fresh Open Source Software Archive Contents of gromacs-2021.5.tar.gz (14 Jan 16:58, 38023772 Bytes) About: GROMACS performs molecular dynamics, i.e. simulates the Newtonian equations of motion for systems with hundreds to millions of particles (designed for biochemical molecules…
Moodle Authentication for JupyterHub Docker image | Moodle | Docker | Python | GitLab | OAuth
I have a JupyterHub installation managed within Docker. Also, I have a Moodle installation. I need a freelancer who is competent in both JupyterHub configuration and Moodle configuration. The task is to take my GitLab repository of the JupyterHub Docker file as a basis, create a new branch and do…
Your Code-First API Needs Validation
[*] When you start a project, you might tend to do code first API as this is a well-known territory for most developers, especially with frameworks like Spring Boot, which uses powerful annotations to generate your API and specifications. In a matter of a few lines, you have a simple…
4 Use Cases of OpenAPI Which Are Good to Know | by Na’aman Hirschfeld | Dec, 2021
An introduction to OpenAPI with use cases Photo by Gertrūda Valasevičiūtė on Unsplash In this article I offer an introduction to OpenAPI (OA) and some of its more interesting use cases. If you are already familiar with what OA is, you can skip ahead to the use-cases part of this…
Accepted golang-github-go-openapi-jsonpointer 1:0.19.5-3 (source) into unstable
—–BEGIN PGP SIGNED MESSAGE—– Hash: SHA512 Format: 1.8 Date: Tue, 30 Nov 2021 15:26:00 +0100 Source: golang-github-go-openapi-jsonpointer Architecture: source Version: 1:0.19.5-3 Distribution: unstable Urgency: medium Maintainer: Debian Go Packaging Team <team+pkg…@tracker.debian.org> Changed-By: Guillem Jover <gjo…@sipwise.com> Changes: golang-github-go-openapi-jsonpointer (1:0.19.5-3) unstable; urgency=medium . * Team upload. * Add Repository and Repository-Browse fields…
How we got to OpenAPI
November 23, 2021 A story about how we went from spontaneous api code writing to a process with a separate repository of api schemas and code generation based on them. TL;DR We were living with an unstructured websocket API of our own design, but realized that it was impossible to…
QIAGEN hiring Bioinformatics Scientist in United States
Overview At the heart of QIAGEN’s business is a vision to make improvements in life possible. We are on an exciting mission to make a real difference in science and healthcare. We are still the entrepreneurial company we started out as and have today achieved a size where we can…
Developer – Java at Parvana Recruitment
Responsibilities: Developing green field microservices to run in a cloud native environment using Java. Developing high quality code using the best tools and practices. Designing, coding, testing, debugging, documenting and maintaining microservice applications and application enhancements. Supporting CI/CD tools integration. Collaborating with other team members on application architecture design and…
Bioinformatics scientist (Full-time/Permanent) for the analysis of multiomics data in oncology
Position of Bioinformatics scientist (Full-time/Permanent) for the analysis of multiomics data in oncology, at Evotec Toulouse (France) to be filled as soon as possible. www.evotec.com/en General Summary : For our site in Toulouse, France, we have an exciting opportunity for a dedicated and professional Bioinformatics Scientist – Full time and…
Bioinformatics DevOps Engineer, remote at Quest Diagnostics in Alameda, California
Job Description: Look for more than answers. At Quest, we are on a continuous journey of discovery and development. It’s this attitude that has made us an industry leader and the #1 Diagnostic Lab in the US. For those joining us, we offer exciting and fast moving career opportunities where…
gromacs 2021.4 – Download, Browsing & More
gromacs 2021.4 – Download, Browsing & More | Fossies Archive “Fossies” – the Fresh Open Source Software Archive Contents of gromacs-2021.4.tar.gz (5 Nov 09:47, 38023262 Bytes) About: GROMACS performs molecular dynamics, i.e. simulates the Newtonian equations of motion for systems with hundreds to millions of particles (designed for biochemical molecules…
Research Engineer (RE123)
Job:Research Engineer (RE123) 0 Context And Mission Professor Nataša Pržulj is looking for a Research Support Engineer to work in her Integrative Computational Network Biology (ICONBI) group (overview of the group is at www.bsc.es/discover-bsc/organisation/scientific-structure/integrative-computational-network-biology-iconbi).The post-holder will participate in the process of finding, designing and implementing new algorithms, Data Science and…
Advanced Bioinformatics Data Scientist job at BenevolentAI, November 2021
With over 35 nationalities and a range of backgrounds represented in our Benevolent team, we aim to build an inclusive environment where our people can bring their authentic selves to work, be respected for who they are and the exceptional work they do. We welcome and actively encourage applications from…
SR. Bioinformatics Software Engineer – CMO
Job:SR. Bioinformatics Software Engineer – CMO – MSKCC 0 Senior Bioinformatics Engineer Company Overview At Memorial Sloan Kettering (MSK), we’re not only changing the way we treat cancer, but also the way the world thinks about it. By working together and pushing forward with innovation and discovery, we’re driving excellence…
NGSeq/DHPGIndex: This tool is for compressing and indexing pan-genomes and genome sequence collections for scalable sequence and read alignment purposes.
General This tool is for compressing and indexing pan-genomes and genome sequence collections for scalable sequence and read alignment purposes. The pipeline can be deployed in cloud computing environment or in dedicated computing cluster. The tool extends the CHIC aligner gitlab.com/dvalenzu/CHIC with distributed and scalable features. DHPGIndex have been tested…
The genome of Shorea leprosula (Dipterocarpaceae) highlights the ecological relevance of drought in aseasonal tropical rainforests
Sequencing of Shorea leprosula genome Sample collection Leaf samples of S. leprosula were obtained from a reproductively mature (diameter at breast height, 50 cm) diploid tree B1_19 (DNA ID 214) grown in the Dipterocarp Arboretum, Forest Research Institute Malaysia (FRIM). DNA extraction Genomic DNA was extracted from leaf samples using the…
How To Extract A Sequence From A Big (6Gb) Multifasta File ?
How To Extract A Sequence From A Big (6Gb) Multifasta File ? 11 I want to extract some sequences using ID from a multifasta file. Using perl is not possible because it gave an error when indexing the database. Maybe because of it’s size? Is there any way to this…
Postdoctoral Fellow – Translational Research in Diabetes – Bioinformatics and Computational Science
Job Description About City of Hope City of Hope, an innovative biomedical research, treatment and educational institution with over 6,000 employees, is dedicated to the prevention and cure of cancer, type 1 diabetes, type 2 diabetes and other life-threatening diseases and guided by a compassionate, patient-centered philosophy. City of Hope…
Postdoctoral Fellow – Translational Research in Diabetes – Bioinformatics and Computational Science job with City of Hope
About City of Hope City of Hope, an innovative biomedical research, treatment and educational institution with over 6,000 employees, is dedicated to the prevention and cure of cancer, type 1 diabetes, type 2 diabetes and other life-threatening diseases and guided by a compassionate, patient-centered philosophy. City of Hope has one…
biopython extract sequence from fasta
My two questions are: What is the simplest way to do this? This unique book shows you how to program with Python, using code examples taken directly from bioinformatics. using python-bloom-filter, just replace the set with seen = BloomFilter(max_elements=10000, error_rate=0.001). This book is suitable for use as a classroom textbook,…
Full Stack DevOps Software Developer Jobs in Grenoble (38) at European Molecular Biology Laboratory –
EMBL Grenoble is looking for a Full-Stack Software Developer to join the Crystallographic Information Management System (CRIMS) project. The Marquez Team operates the High Throughput Crystallization Laboratory (HTX Lab), one of the largest facilities of its kind in Europe and has developed automated pipelines for macromolecular crystallography and fragment screening…
Web Developer at European Molecular Biology Laboratory (EMBL)
About the team/job IT Services operates and supports the IT infrastructure and services at EMBL headquarters in Heidelberg and at the laboratory’s sites in Barcelona and Rome. In collaboration with the EMBL-EBI in Cambridge our team is creating and implementing a new web infrastructure for all EMBL websites. We are…
Where can I get ?or how can I make a mappability track for hg38 assembly
Where can I get ?or how can I make a mappability track for hg38 assembly 2 Lucky you @manojmumar_bhosale I worked on similar problem recently and therefore have the bash script you can use. Required tools: GEM libary from here UCSC’s wigToBigWig from here (I chose binary for Linux 64…
Setup my Github repo in a Kaggle environment | Python
I would like step by step instructions to: 1. Set up Git so that commands like “git pull” work within the provided linux environment 2. Create a Conda environment (or overwrite the existing one) in this Kaggle environment, generated from my own [login to view URL] file 3. Preserve all…
Bioinformatics Software Engineer, Cancer Genomics Research Laboratory (req2036) job with Frederick National Laboratory
PROGRAM DESCRIPTION We are seeking an enthusiastic, creative, and collaborative bioinformatics software engineer to support pipeline development and analysis for our broad portfolio of genomic studies. If you have experience designing and deploying robust, reproducible, production-quality pipelines, then come join our talented team of bioinformaticians dedicated to understanding the genetics…