Tag: gitlab

504 gateway timeout rstudio ondemand – IFB Core Cluster

Hi, I’m trying to access rstudio via the ondemand portal but independently of how many resources I allocate to it I can’t connect to the rstudio and get error 504 gateway timeout when trying to access the instance. I can regularly access rstudio from the rstudio older portal but I’m…

Continue Reading 504 gateway timeout rstudio ondemand – IFB Core Cluster

Bioinformatics scientist | GENOMINES

Job Description Who we are Genomines is a young biotechnology company based in Paris and Saclay, specialized in sustainable extraction of Nickel from plants. The mission of Genomines is to usher in a new era of sustainable mining by using genetically enhanced plants to extract metals from soil (agromining). Through…

Continue Reading Bioinformatics scientist | GENOMINES

Post Masters RA – Bioinformatics Data Scientist Job

Job Description The Earth and Biological Sciences Directorate (EBSD) leads novel and necessary research in three core areas: Atmospheric and Climate sciences, Biological Sciences, and Environmental Molecular Sciences. The contributions of EBSD staff are many as we continue to elevate the impact of PNNL’s science mission: to understand, predict, and…

Continue Reading Post Masters RA – Bioinformatics Data Scientist Job

Bioinformatics Analyst at Volta Labs, Inc.

Volta Labs is an MIT spin-off that has unlocked powerful new DNA sequencing capabilities by developing novel fluidic technology. Building off of this core technology, Volta has created a product that streamlines DNA sequencing sample prep. Volta is at the forefront of a sequencing revolution, driving sequencing towards seamless ease…

Continue Reading Bioinformatics Analyst at Volta Labs, Inc.

400 : Bad Request OAuth state missing from cookies – JupyterHub

I have setup two services of jupyterhub on single server which are running on different portroot@e2e-94-254:~# netstat -lntup | grep nodetcp 0 0 0.0.0.0:8000 0.0.0.0:* LISTEN 683069/nodetcp 0 0 0.0.0.0:20000 0.0.0.0:* LISTEN 682679/nodetcp 0 0 127.0.0.1:20002 0.0.0.0:* LISTEN 682679/nodetcp 0 0 127.0.0.1:8001 0.0.0.0:* LISTEN 683069/node I have setup nginx as…

Continue Reading 400 : Bad Request OAuth state missing from cookies – JupyterHub

Post Masters RA – Bioinformatics Data Scientist – Richland

**Overview** The Earth and Biological Sciences Directorate (EBSD) leads novel and necessary research in three core areas: Atmospheric and Climate sciences, Biological Sciences, and Environmental Molecular Sciences. The contributions of EBSD staff are many as we continue to elevate the impact of PNNL’s science mission: to understand, predict, and control…

Continue Reading Post Masters RA – Bioinformatics Data Scientist – Richland

community/duply: upgrade to 2.5.2 – aports

diff options context: 12345678910152025303540 space: includeignore mode: unifiedssdiffstat only author Celeste <20312-Celeste@users.gitlab.alpinelinux.org> 2023-12-02 02:49:07 +0000 committer Francesco Colista <fcolista@alpinelinux.org> 2023-12-02 07:33:41 +0000 commit aaac25730406cfe639a71313c1a76c04a1545b7b (patch) tree ed565eca5907ea2cdd55c71e97aed2cb67e40c58 /?id=24b21140e23c7a5c5491d91da286c70547380c3c parent e98db8ebf0d9563680fea4afefd79ff3c89b8937 (diff) community/duply: upgrade to 2.5.2HEADmaster Diffstat (limited to ‘?id=24b21140e23c7a5c5491d91da286c70547380c3c’) 0 files changed, 0 insertions, 0 deletions Read more here: Source…

Continue Reading community/duply: upgrade to 2.5.2 – aports

Energy Jobline hiring Senior Bioinformatics Engineer in Cambridge, England, United Kingdom

Company DescriptionGenomics England partners with the NHS to provide whole genome sequencing diagnostics. We also equip researchers to find the causes of disease and develop new treatments – with patients and participants at the heart of it all. Our mission is to continue refining, scaling, and evolving our ability to…

Continue Reading Energy Jobline hiring Senior Bioinformatics Engineer in Cambridge, England, United Kingdom

The Top 5 Alternatives to GitHub for Data Science Projects

Image by Author   GitHub has long been the go-to platform for developers, including those in the data science community. It offers robust version control and collaboration features. However, data scientists often have unique requirements, such as handling large datasets, complex workflows, and specific collaboration needs that GitHub may not…

Continue Reading The Top 5 Alternatives to GitHub for Data Science Projects

Navigating the Evolving Landscape of Generative AI

In a rapidly evolving tech landscape, the adoption of generative AI-powered tools is on the rise. According to a June report by Productboard, 9 out of 10 venture capital-backed companies have plans to incorporate generative AI into their products. Furthermore, nearly two-thirds of these companies aim to implement this technology…

Continue Reading Navigating the Evolving Landscape of Generative AI

JupyterHub for my University with Nbgrader

Dear Muhammad, In case this helps, here is the configuration file for the image we are using on JupyterHub@Paris-Saclay, with Python, C, C++, R, SageMath, nbgrader (and libraries). Not C# or SQL though. Not much documentation either. Agregating all these in a single image is tough due to recurent version conflicts; maybe starting from…

Continue Reading JupyterHub for my University with Nbgrader

The ABCs of AI tools

Listen to the article 12 min This audio is auto-generated. Please let us know if you have feedback. OpenAI’s ChatGPT served as a catalyst for a torrent of generative AI-powered tools and a fresh crop of foundational models.  For CIOs tasked with helming adoption efforts, it can be a challenge…

Continue Reading The ABCs of AI tools

How generative AI is transforming the customer service experience

If you’ve had the chance to chat with Bard or another conversation AI tool in the last year, you probably, like me, walked away with a distinct impression that services like these are the future of enterprise technology. As new generative AI capabilities continue to become more readily accessible, you…

Continue Reading How generative AI is transforming the customer service experience

Cineca-ai – HPC Cineca

Version: 2.02 (G100) Availability: GALILEO100 Target: all Official web site: gitlab.www.hpc.cineca.it/sorland2/cineca-ai Related Commands: If you wish to activate the default environment:        $ conda activate $CINECA_AI_ENV   – If you wish to create a personal conda env with your installations, you can use the local conda channel to access…

Continue Reading Cineca-ai – HPC Cineca

who can share a package of gromacs-drude – User discussions

RogerM November 27, 2023, 8:07am 1 Recently, I wanted to run a polarizable simulation using gromacs with drude force filed. I got the install package using the command in MacKerell Lab, but it failed when I used “git clone . It shows the following error:fatal: unable to connect to git.gromacs.org:git.gromacs.org[0:…

Continue Reading who can share a package of gromacs-drude – User discussions

Implementing Soft Nearest Neighbor Loss in PyTorch | by Abien Fred Agarap | Nov, 2023

Representation learning is the task of learning the most salient features in a given dataset by a deep neural network. It is usually an implicit task done in a supervised learning paradigm, and it is a crucial factor in the success of deep learning (Krizhevsky et al., 2012; He et…

Continue Reading Implementing Soft Nearest Neighbor Loss in PyTorch | by Abien Fred Agarap | Nov, 2023

jupyterhub jobs – 2 Active jupyterhub Jobs Openings (Nov 2023)

jupyterhub jobs – 2 Active jupyterhub Jobs Openings (Nov 2023) – Shine.com Filter by Location Experience Salary More filters Job Details At Pitney Bowes, we do the right thing, the right way. As a member of our team, you can too. We have amazing people who are the driving force,…

Continue Reading jupyterhub jobs – 2 Active jupyterhub Jobs Openings (Nov 2023)

Possible inclusion of PLUMED interface – Developers discussions

Dear GROMACS developers, we (PLUMED developers) noticed that GROMACS now makes it possible to easily add plugins modifying forces. We would like to investigate if it makes sense for us to implement an interface for PLUMED in the spirit of the one introduced for the Colvars package in this commit:…

Continue Reading Possible inclusion of PLUMED interface – Developers discussions

REMBI Lab Guide < BioImage Archive < EMBL-EBI

The aim of this guide is to help you prepare in advance to submit your data to the BioImage Archive. In particular, it provides an overview of what data you should submit, as well as the information you’ll need to provide with your images so that you can think about…

Continue Reading REMBI Lab Guide < BioImage Archive < EMBL-EBI

Volta Labs, Inc. hiring Senior Bioinformatics Engineer/Analyst in Boston, Massachusetts, United States

Volta Labs is an MIT spin-off that has unlocked powerful new DNA sequencing capabilities by developing novel fluidic technology. Building off of this core technology, Volta has created a product that streamlines DNA sequencing sample prep. Volta is at the forefront of a sequencing revolution, driving sequencing towards seamless ease…

Continue Reading Volta Labs, Inc. hiring Senior Bioinformatics Engineer/Analyst in Boston, Massachusetts, United States

GitLab Introduces Duo Chat: A Conversational AI Tool for Productivity

In software development, developers often face challenges when working with complex code or managing project issues efficiently. Finding the correct information and assistance in the workflow can be a hurdle. To address this, GitLab has introduced a new tool called Duo Chat, which aims to simplify the developer experience by…

Continue Reading GitLab Introduces Duo Chat: A Conversational AI Tool for Productivity

IJMS | Free Full-Text | CRISPR/Cas9 Directed Reprogramming of iPSC for Accelerated Motor Neuron Differentiation Leads to Dysregulation of Neuronal Fate Patterning and Function

1. Introduction As the world population ages, neurodegenerative diseases are increasing. The outcome of these diagnoses varies but can lead to fatality 50% of the time within 15–20 months [1]. Treatments for neurodegeneration, in particular motor neuron (MN) diseases, are restricted due to the limitations of motor neuron repair and…

Continue Reading IJMS | Free Full-Text | CRISPR/Cas9 Directed Reprogramming of iPSC for Accelerated Motor Neuron Differentiation Leads to Dysregulation of Neuronal Fate Patterning and Function

Cuda error with gromacs 2023.3 (CUDA error #700 an illegal memory access) – User discussions

roozi November 7, 2023, 10:16pm 1 GROMACS version:2023.3GROMACS modification: NoI ‘m getting a CUDA error using the standard Gromacs 2023.3 version on my laptop using:NVIDIA RTX-4060 gpu and 20 OpenMP threads (corei7 generation 13).Cuda version: 12.3 nvidia driver version: 545.84 . Os: Ubuntu 22.4.02 (installed on WSL2 , WINDOWS 11)…

Continue Reading Cuda error with gromacs 2023.3 (CUDA error #700 an illegal memory access) – User discussions

Timeline for Upcoming Releases and Milestones – Developers discussions

This thread will be updated to inform about the dates of the next milestones and releases. See Milestones · GROMACS / GROMACS · GitLab for a full list. Please make sure that all your MRs are submitted and reviewed well in time before the milestones. 2024-beta – milestone: 2023-11-10 (the…

Continue Reading Timeline for Upcoming Releases and Milestones – Developers discussions

Google exhibits off what’s subsequent for Vertex AI, basis fashions

Head over to our on-demand library to view classes from VB Remodel 2023. Register Right here Leia mais AI is a core focus for Google, and at its Google Subsequent occasion right this moment the corporate introduced a sequence of updates throughout its portfolio that profit from the ability of…

Continue Reading Google exhibits off what’s subsequent for Vertex AI, basis fashions

Genomics England hiring Senior Bioinformatics Engineer in London, England, United Kingdom

Company DescriptionGenomics England partners with the NHS to provide whole genome sequencing diagnostics. We also equip researchers to find the causes of disease and develop new treatments – with patients and participants at the heart of it all. Our mission is to continue refining, scaling, and evolving our ability to…

Continue Reading Genomics England hiring Senior Bioinformatics Engineer in London, England, United Kingdom

Container is gone after start – JupyterHub

Hi ! I try to mount a jupyterhub container. The server seems to run smoothly but cannot create a user notebook container (DockerSpawner). After a few seconds, the container disappears. Hereafter is my jupyterhub log (user: donzel): [D 2023-11-03 14:18:16.039 JupyterHub application:908] Looking for /srv/jupyterhub/jupyterhub_config in /srv/jupyterhub [D 2023-11-03 14:18:16.054…

Continue Reading Container is gone after start – JupyterHub

Senior Bioinformatics Engineer by Genomics England in Cambridge Ref: 220521761

Company Description Genomics England partners with the NHS to provide whole genome sequencing diagnostics. We also equip researchers to find the causes of disease and develop new treatments – with patients and participants at the heart of it all. Our mission is to continue refining, scaling, and evolving our ability to…

Continue Reading Senior Bioinformatics Engineer by Genomics England in Cambridge Ref: 220521761

RStudio Guide | The GitLab Handbook

RStudio Guide {:toc .toc-list-icons .hidden-md .hidden-lg} {::options parse_block_html=“true” /} What is R? Similar to Python, R is an open-source statistical software that is used to clean and analyze data. It is popular within the data science community and has many packages that make statistical modeling easier for statisticians and data…

Continue Reading RStudio Guide | The GitLab Handbook

Scientists Uncover Genetic Secrets of Butternuts

UConn undergraduates mapped the DNA of the endangered butternut tree as part of a broader initiative to study overlooked endangered species. The research offers insights into survival mechanisms and provides students with a valuable real-world research experience. An international collaboration reveals the genetic secrets of endangered species, from trees to…

Continue Reading Scientists Uncover Genetic Secrets of Butternuts

C++20 support in the codebase – Developers discussions

vedran October 24, 2023, 9:57am 1 Hello, Our code base currently compiles as C++17 as we have decided not to bump the standard and subsequently the required compiler versions for 2024 release. By setting CMAKE_CXX_STANDARD to 20 in CMakeLists.txt, one can easily see that GROMACS can not at the moment…

Continue Reading C++20 support in the codebase – Developers discussions

Looking for a Job in Croatia? This Week’s Top 10 from Posao.hr (October 22, 2023)

October 22, 2023 – Looking for a job in Croatia? A weekly feature on TCN, in partnership with leading job site agency, Posao.hr, who present a selection of weekly job listings. Strabag AG is looking for Senior DevOps Engineer / Architect (m/f/d). The location of work is Belgrade and Zagreb….

Continue Reading Looking for a Job in Croatia? This Week’s Top 10 from Posao.hr (October 22, 2023)

gromacs 2023.3 – Download, Browsing & More

gromacs 2023.3 – Download, Browsing & More | Fossies Archive “Fossies” – the Fresh Open Source Software Archive Contents of gromacs-2023.3.tar.gz (19 Oct 10:41, 42071770 Bytes) About: GROMACS performs molecular dynamics, i.e. simulates the Newtonian equations of motion for systems with hundreds to millions of particles (designed for biochemical molecules…

Continue Reading gromacs 2023.3 – Download, Browsing & More

Top F5 WAF Alternatives in 2023

F5 Cloud WAF combines signature and behaviour-based threat detection mechanisms to protect applications, regardless of the deployment location. It protects against injection attacks, session hijacking, cross-site scripting, man-in-the-middle attacks, and numerous other vulnerabilities, with continuously updated policies to shield against emerging threats. Most Important Benefits of F5 WAF Hybrid Deployment…

Continue Reading Top F5 WAF Alternatives in 2023

Looking for a Job in Croatia? This Week’s Top 10 from Posao.hr (October 15, 2023)

October 8, 2023 – Looking for a job in Croatia? A weekly feature on TCN, in partnership with leading job site agency, Posao.hr, who present a selection of weekly job listings. Kempinski hotel Adriatic (Skiper hoteli d.o.o.) is looking for Groups & Events Coordinator (m/f/d). The location of work is…

Continue Reading Looking for a Job in Croatia? This Week’s Top 10 from Posao.hr (October 15, 2023)

AI hasn’t yet enhanced software development processes: Google Cloud

Listen to the article 3 min This audio is auto-generated. Please let us know if you have feedback. Dive Brief: Despite robust enthusiasm for AI’s potential in software development, the technology’s impact has been relatively minimal thus far, according to Google Cloud’s State of DevOps 2023 report, published Thursday. The…

Continue Reading AI hasn’t yet enhanced software development processes: Google Cloud

FreshPorts — devel/RStudio/files/patch-src_cpp_server_CMakeLists.txt

non port: devel/RStudio/files/patch-src_cpp_server_CMakeLists.txt SVNWeb Number of commits found: 3 Thu, 10 Jun 2021 [ 17:11 Yuri Victorovich (yuri)  ]          ade17ad  ade17adf6f1f5671bbbd8cf62f14f38fe88f33f4 devel/RStudio/Makefile ade17adf6f1f5671bbbd8cf62f14f38fe88f33f4 devel/RStudio/distinfo ade17adf6f1f5671bbbd8cf62f14f38fe88f33f4 devel/RStudio/files/patch-CMakeGlobals.txt ade17adf6f1f5671bbbd8cf62f14f38fe88f33f4 devel/RStudio/files/patch-src_cpp_CMakeLists.txt ade17adf6f1f5671bbbd8cf62f14f38fe88f33f4 devel/RStudio/files/patch-src_cpp_core_system_PosixSystem.cpp ade17adf6f1f5671bbbd8cf62f14f38fe88f33f4 devel/RStudio/files/patch-src_cpp_desktop_DesktopMain.cpp ade17adf6f1f5671bbbd8cf62f14f38fe88f33f4 devel/RStudio/files/patch-src_cpp_desktop_DesktopWebView.cpp ade17adf6f1f5671bbbd8cf62f14f38fe88f33f4 devel/RStudio/files/patch-src_cpp_diagnostics_CMakeLists.txt ade17adf6f1f5671bbbd8cf62f14f38fe88f33f4 devel/RStudio/files/patch-src_cpp_server_CMakeLists.txt ade17adf6f1f5671bbbd8cf62f14f38fe88f33f4 devel/RStudio/files/patch-src_cpp_session_CMakeLists.txt (Only the first 10 of 13 ports in…

Continue Reading FreshPorts — devel/RStudio/files/patch-src_cpp_server_CMakeLists.txt

Valo Health hiring Staff Scientist, Bioinformatics in Boston, Massachusetts, United States

About UsValo Health is a technology company that is integrating human-centric data and AI-powered technology to accelerate the creation of life-changing drugs for more patients faster. Valo was created with the belief that the drug discovery and development process can and should be faster and less expensive, with a much…

Continue Reading Valo Health hiring Staff Scientist, Bioinformatics in Boston, Massachusetts, United States

Valo Health hiring Staff Scientist, Bioinformatics in San Francisco, California, United States

About UsValo Health is a technology company that is integrating human-centric data and AI-powered technology to accelerate the creation of life-changing drugs for more patients faster. Valo was created with the belief that the drug discovery and development process can and should be faster and less expensive, with a much…

Continue Reading Valo Health hiring Staff Scientist, Bioinformatics in San Francisco, California, United States

Openapi: Get rid of redirection

How to exclude a redirect endpoint from swagger openapi Im using nestjs. we have root endpoint / which redirects to /health endpoint. since its just redirection, how to remove that from swagger?… Read more > Remove redirect from domain – cPanel API 2 Remove redirect from domain. This function removes…

Continue Reading Openapi: Get rid of redirection

R Studio 2022 – Avseetvf

At rstudio::conf(2022) our workshops featured hands-on exercises, discussions, and Q&A forums. This was an opportunity to meet, share, and collaborate with …In July, we wrapped up rstudio::conf(2022). Throughout the conference, we had an exciting array of workshops, an inspiring lineup of speakers, Birds of a …We are delighted to announce the rstudio::conf…

Continue Reading R Studio 2022 – Avseetvf

Site Reliability Engineer, Bioinformatics Job Description

Posted 26 days ago Site Reliability Engineer, Bioinformatics Exact Sciences – Madison, WI Apply now Position Overview Exact Sciences is revolutionizing the cancer diagnostics space and is now looking for another Site Reliability Engineer (SRE) to join its incredible team. SREs at Exact Sciences support our mission by pushing out…

Continue Reading Site Reliability Engineer, Bioinformatics Job Description

Lamini’s Language Model Refinement Platform Runs Exclusively on AMD GPUs

Machine learning startup Lamini has announced that its large language model (LLM) refining platform runs exclusively on AMD’s Instinct GPUs. The platform allows enterprises to fine-tune existing foundation models, such as OpenAI’s GPT3 or Meta’s Llama 2, against their internal datasets. Lamini’s choice of hardware sets it apart from other…

Continue Reading Lamini’s Language Model Refinement Platform Runs Exclusively on AMD GPUs

Starting Server for Non-Default Users in JupyterHub: 500 Internal Server Error – JupyterHub

I am encountering an issue with starting a server for non-default users in JupyterHub. When attempting to start a server for a user named “mahdi” (or any other non-default user), I receive the following error message in the JupyterHub container logs: [I 2023-09-20 07:40:15.461 JupyterHub provider:659] Creating oauth client jupyterhub-user-mahdi…

Continue Reading Starting Server for Non-Default Users in JupyterHub: 500 Internal Server Error – JupyterHub

Backend Developer – Python – AI/ML – ApTask

Position Lead Backend Developer – AIML     Location Allentown PA/ Boston MA Job Type Contract to Hire / Permanent Pay rate $70/hr on C2C  / $140k/Annum+ Benefits   The developer in these roles makes an impact in the organization by designing and developing AIML solutions. This role is full hands-on…

Continue Reading Backend Developer – Python – AI/ML – ApTask

AI Is a “Must-Have” in GitLab’s 2023 Global DevSecOps Report

GitLab have released their 2023 Global DevSecOps AI report, with a key finding being that AI and ML use is evolving from “nice to have” to “must have”. The report shows that 23% of organizations are already using AI in software development, and of those, 60% are using it daily….

Continue Reading AI Is a “Must-Have” in GitLab’s 2023 Global DevSecOps Report

Senior Research Scientist, Bioinfomatician (Cancer Science Institute) job with NATIONAL UNIVERSITY OF SINGAPORE

(JR:21694) Job Description The position of Postdoctoral Fellow – with an emphasis on computational cancer genomics – is immediately available at the Cancer Science Institute of Singapore (a part of National University of Singapore). The Postdoctoral Fellow will work with the laboratories of Professor Ashok Venkitaraman, on a project studying the…

Continue Reading Senior Research Scientist, Bioinfomatician (Cancer Science Institute) job with NATIONAL UNIVERSITY OF SINGAPORE

Why Developers and Staff+ Engineers Should Get Involved in Open-Source Collaborative Development

Key Takeaways Today’s software development includes extensive use of open-source libraries, APIs, and other components. Most companies use over 70% open source in their infrastructure, products, and services. It is important for modern software developers, especially in staff+ roles, to know how to work with open source. There…

Continue Reading Why Developers and Staff+ Engineers Should Get Involved in Open-Source Collaborative Development

Report: Only 23% of development teams have implemented AI already

Only 23% of development teams are actually implementing AI today in their software development life cycle.  This is according to GitLab’s State of AI in Software Development report, which surveyed over 1,000 DevSecOps professionals in June 2023.   Despite low adoption now, when you add in the number of teams planning…

Continue Reading Report: Only 23% of development teams have implemented AI already

Full Stack Web Developer – Hinxton, Cambridgeshire, United Kingdom – EMBL

Description We are looking for an enthusiastic Full Stack Developer to join the EMBL-EBI Web Development team in our mission to create scientific web services that are aesthetically pleasing, useful, usable, and empower our employees and scientists worldwide to solve the biggest challenges in biology. The team provides a centralised…

Continue Reading Full Stack Web Developer – Hinxton, Cambridgeshire, United Kingdom – EMBL

Research Associate (m/f/x) job with TECHNISCHE UNIVERSITAT DRESDEN (TU DRESDEN)

Technische Universität Dresden (TUD), as a University of Excellence, is one of the leading and most dynamic research institutions in the country. Founded in 1828, today it is a globally oriented, regionally anchored top university as it focuses on the grand challenges of the 21st century. lt develops innovative solutions…

Continue Reading Research Associate (m/f/x) job with TECHNISCHE UNIVERSITAT DRESDEN (TU DRESDEN)

AI Software Solutions Engineer at Intel

Job Description Intel Datacenter and AI Group focuses on developing disruptive solutions that will shape the future of AI and Deep Learning computing. Led by top technologists and successful entrepreneurs, our vision is to take AI processing from its current limits to the peak of its potential. We see challenges…

Continue Reading AI Software Solutions Engineer at Intel

Real-time Analytics News for Week Ending September 2

In this week’s real-time analytics news: Google Cloud’s Next ’23 conference saw many announcements from the company and its partners. Keeping pace with news and developments in the real-time analytics market can be a daunting task. We want to help by providing a summary of some of the important real-time…

Continue Reading Real-time Analytics News for Week Ending September 2

This week in enterprise: Google Cloud sharpens its AI story at Next, and earnings signal an improving tech outlook

As summer effectively comes to an end, enterprise tech companies continued to forget August is supposed to be for vacations — but that’s not such a bad thing. This past week Google mounted a renewed offensive in artificial intelligence at its Next cloud event, sharpening its message and its product…

Continue Reading This week in enterprise: Google Cloud sharpens its AI story at Next, and earnings signal an improving tech outlook

Using tool of charmm2gmx – User discussions

Brief description of tools/files:Charmm2gmx 1.0.2J. Chem. Inf. Model. 2023, 63, 14, 4246–4252awacha.gitlab.io/charmm2gmx/index.html Link:Contact person (JieChen and chenjiedlpu@163.com): How the work has been tested/reviewed:Hi Proffessor Justin, I found good tool for convert CHARMM stream files produced by CGenFF to GROMACS topologies, named Charmm2gmx. It likes the python file of charmm2gmx.py. But…

Continue Reading Using tool of charmm2gmx – User discussions

PDBe Coordinator – Hinxton, United Kingdom – EMBL

Description Your role This position is for an ambitious scientist, with a passion for open data, who wants to impact the development of key resources for global, public 3D-structure data. We need an inspiring and engaging person who understands the importance of teamwork and is focused on the delivery of…

Continue Reading PDBe Coordinator – Hinxton, United Kingdom – EMBL

jsteffan/pytorch-sig-testing-copr – Fedora Discussion

Description Continuous builds initiated by packit service. For more info check out packit.dev/ Installation Instructions You can check out the upstream project git@gitlab.com:fedora/sigs/ai-ml/pytorch/rpms.git to find out how to consume these builds. This copr project is created and handled by the packit project (packit.dev/). Active Releases The following unofficial repositories are…

Continue Reading jsteffan/pytorch-sig-testing-copr – Fedora Discussion

European Bioinformatics Institute | EMBL-EBI hiring Coordinator for Protein Data Bank in Europe (PDBe) in Hinxton, England, United Kingdom

We are looking for an outstanding individual to coordinate the Protein Data Bank in Europe Team (PDBe; pdbe.org) team at the European Bioinformatics Institute (EMBL-EBI). This role is central for delivering data services that significantly impact on how the scientific community uses bio-macromolecular structure data now and in the future….

Continue Reading European Bioinformatics Institute | EMBL-EBI hiring Coordinator for Protein Data Bank in Europe (PDBe) in Hinxton, England, United Kingdom

Senior Research Scientist – Bioinfomatician (Cancer Science Institute) (JR:21694) job with NATIONAL UNIVERSITY OF SINGAPORE

Job Description The position of Postdoctoral Fellow – with an emphasis on computational cancer genomics – is immediately available at the Cancer Science Institute of Singapore (a part of National University of Singapore). The Postdoctoral Fellow will work with the laboratories of Professor Ashok Venkitaraman, on a project studying the evolution…

Continue Reading Senior Research Scientist – Bioinfomatician (Cancer Science Institute) (JR:21694) job with NATIONAL UNIVERSITY OF SINGAPORE

Comparative analysis of carbapenem-resistant K. pneumoniae

Introduction The worldwide spread of Klebsiella pneumoniae is a major global public health threat.1,2 K. pneumoniae is an opportunistic pathogen that colonizes the human gut and respiratory tract and possibly causes infection in immunocompromised hosts. Gut colonized K. pneumoniae is one of the important pathogens causing nosocomial infections, although the…

Continue Reading Comparative analysis of carbapenem-resistant K. pneumoniae

phbuilder: a tool for efficiently setting up constant pH molecular dynamics simulations in GROMACS,ChemRxiv

phbuilder: a tool for efficiently setting up constant pH molecular dynamics simulations in GROMACS ChemRxiv Pub Date : 2023-08-11 , DOI: 10.26434/chemrxiv-2023-rdhjn Anton, Jansen, Noora, Aho, Gerrit, Groenhof, Pavel,…

Continue Reading phbuilder: a tool for efficiently setting up constant pH molecular dynamics simulations in GROMACS,ChemRxiv

Posit Connect Shiny App using Gitlab Private Repo – Posit Connect

I have a working Shiny App in rstudio, which installs all packages just fine, including a gitlab private repo and a github repo. Locally, this works using renv. Publishing this to Posit Connect, we had to replace the github public package, but the gitlab private repo is required. I’ve tried…

Continue Reading Posit Connect Shiny App using Gitlab Private Repo – Posit Connect

Full Stack Web Developer at European Molecular Biology Laboratory (EMBL)

Advertised Grade-Grading: Grade 5 – 6 (monthly salary starting at £3,090 – £3,456 after tax) plus other paid benefits depending on personal circumstances Contract Duration-Length of Time (years/months): 3 years (renewable upto 9 years) About the team/job We are looking for an enthusiastic Full Stack Developer to join the EMBL-EBI…

Continue Reading Full Stack Web Developer at European Molecular Biology Laboratory (EMBL)

Research Fellow, Bioinformatician (Cancer Science Institute) job with NATIONAL UNIVERSITY OF SINGAPORE

Job Description (JR:18151) The position of Postdoctoral Fellow – with an emphasis on computational cancer genomics – is immediately available at the Cancer Science Institute of Singapore (a part of National University of Singapore). The Postdoctoral Fellow will work with the laboratories of Professor Ashok Venkitaraman, on a project studying the evolution of…

Continue Reading Research Fellow, Bioinformatician (Cancer Science Institute) job with NATIONAL UNIVERSITY OF SINGAPORE

The Linux Foundation Announces Keynote Speakers for Open Source Summit Europe 2023

Global visionaries headline the premier open source event in Europe, covering the most pivotal topics and technologies at the core of open source. SAN FRANCISCO, Aug. 10, 2023 /PRNewswire/ — The Linux Foundation, the nonprofit organization enabling mass innovation through open source, today announced the keynote speakers for Open Source Summit…

Continue Reading The Linux Foundation Announces Keynote Speakers for Open Source Summit Europe 2023

What to expect during Google Cloud Next: Join theCUBE August 29-31

Alphabet Inc. is the global leader in digital ad revenue and the top search engine in the world, yet its cloud division remains firmly entrenched in third place behind Amazon Web Services Inc. and Microsoft Corp. for market share. Could that picture soon change? This is one of several key…

Continue Reading What to expect during Google Cloud Next: Join theCUBE August 29-31

How can I use OpenAPI to provide pipeline results to a pre-merge commit when GitLab enables merge request pipelines? – GitLab CI/CD

Jou7 August 7, 2023, 1:17am 1 Hi. How can I use OpenAPI to provide pipeline results to a pre-merge commit when GitLab enables merge request pipelines? I want to use external jenkins to verify the merged results, but I have no way to report the results to gitlab. Thanks for…

Continue Reading How can I use OpenAPI to provide pipeline results to a pre-merge commit when GitLab enables merge request pipelines? – GitLab CI/CD

Sensing the DNA-mismatch tolerance of catalytically inactive Cas9 via barcoded DNA nanostructures in solid-state nanopores

DNA-nanostructure barcodes To observe that the CRISPR–dCas9 system is specific enough to detect the single base pair, DNA constructs with different ‘barcodes’ plus an overhang sequence for dCas9 was created. The DNA construct was synthesized from pairing a linearized 7.2 kbp single-stranded (ss) M13mp18 DNA (GuildBiosciences) with 190 complementary oligonucleotides via…

Continue Reading Sensing the DNA-mismatch tolerance of catalytically inactive Cas9 via barcoded DNA nanostructures in solid-state nanopores

The Global Artificial Intelligence (AI) In Marketing Market

New York, July 31, 2023 (GLOBE NEWSWIRE) — Reportlinker.com announces the release of the report “Global Artificial Intelligence In Marketing Market Size, Share & Industry Trends Analysis Report By Technology, By End User, By Component, By Application, By Regional Outlook and Forecast, 2023 – 2030” – www.reportlinker.com/p06481149/?utm_source=GNW The use of…

Continue Reading The Global Artificial Intelligence (AI) In Marketing Market

Bioinformatics Analyst III, Spatial Biology, CGR job with Frederick National Laboratory for Cancer Research

Bioinformatics Analyst III, Spatial Biology, CGR Job ID: req3667Employee Type: exempt full-timeDivision: Clinical Research ProgramFacility: Rockville: 9615 MedCtrDrLocation: 9615 Medical Center Drive, Rockville, MD 20850 USA The Frederick National Laboratory is a Federally Funded Research and Development Center (FFRDC) sponsored by the National Cancer Institute (NCI) and operated by Leidos…

Continue Reading Bioinformatics Analyst III, Spatial Biology, CGR job with Frederick National Laboratory for Cancer Research

Exact Sciences hiring Site Reliability Engineer, Bioinformatics in United States

Position OverviewExact Sciences is revolutionizing the cancer diagnostics space and is now looking for another Site Reliability Engineer (SRE) to join its incredible team. SREs at Exact Sciences support our mission by pushing out new features and applications every day. The Site Reliability Engineering team constantly practices the DevOps mindset…

Continue Reading Exact Sciences hiring Site Reliability Engineer, Bioinformatics in United States

[PATCH] Input: ads7846 – don’t set ABS_PRESSURE when min == max

[PATCH] Input: ads7846 – don’t set ABS_PRESSURE when min == max * [PATCH] Input: ads7846 – don’t set ABS_PRESSURE when min == max @ 2023-07-27 15:19 Benjamin Bara 2023-07-27 20:39 ` Dmitry Torokhov 0 siblings, 1 reply; 3+ messages in thread From: Benjamin Bara @ 2023-07-27 15:19 UTC (permalink /…

Continue Reading [PATCH] Input: ads7846 – don’t set ABS_PRESSURE when min == max

Site Reliability Engineer, Bioinformatics at Exact Sciences

Position Overview Exact Sciences is revolutionizing the cancer diagnostics space and is now looking for another Site Reliability Engineer (SRE) to join its incredible team. SREs at Exact Sciences support our mission by pushing out new features and applications every day. The Site Reliability Engineering team constantly practices the DevOps…

Continue Reading Site Reliability Engineer, Bioinformatics at Exact Sciences

Research Fellow – Bioinformatician (Cancer Science Institute) – Dr Jason Pitt’s Lab job with NATIONAL UNIVERSITY OF SINGAPORE

Job Description The mission of Cancer Science Institute (National University of Singapore) is to better understand the causes of human cancer across Asia, and thereby improve its detection, treatment, and prevention. Our outstanding researchers and exceptional facilities create an energetic environment for ground-breaking science and world-class training. The position of…

Continue Reading Research Fellow – Bioinformatician (Cancer Science Institute) – Dr Jason Pitt’s Lab job with NATIONAL UNIVERSITY OF SINGAPORE

JetBrains Updates IDEs With AI

JetBrains has released its regular update of its IDEs including IntelliJ IDEA, WebStorm, RubyMine, PyCharm, GoLand, DataSpell, DataGrip, and other tools, such as the latest 2023.3 version of Datalore Enterprise. The headline improvement in all of them is a new AI Assistant. This is still in limited access, and…

Continue Reading JetBrains Updates IDEs With AI

API mocking with OpenAPI

An API mock is a piece of code that allows a developer, with the help of a mock server, to have working API endpoints without writing the code behind it. Designed by vectorjuice / Freepik API mocking has many useful applications: speeds up backend and frontend development since the two…

Continue Reading API mocking with OpenAPI

Bioinformatics Software Engineer II – Memorial Sloan Kettering Cancer Center

Pay Range: $96,800.00-$154,900.00 Company Overview: The people of Memorial Sloan Kettering Cancer Center (MSK) are united by a singular mission: ending cancer for life. Our specialized care teams provide personalized, compassionate, expert care to patients of all ages. Informed by basic research done at our Sloan Kettering Institute, scientists across…

Continue Reading Bioinformatics Software Engineer II – Memorial Sloan Kettering Cancer Center

Bioinformatics Software Engineer II in New York, NY for Memorial Sloan Kettering Cancer Center

Details Posted: 23-Jul-23 Location: New York, New York Salary: Open Categories: Operations Pay Range $96,800.00-$154,900.00 Company Overview The people of Memorial Sloan Kettering Cancer Center (MSK) are united by a singular mission: ending cancer for life. Our specialized care teams provide personalized, compassionate, expert care to patients of all ages….

Continue Reading Bioinformatics Software Engineer II in New York, NY for Memorial Sloan Kettering Cancer Center

Enterprise-ready generative AI models go GA in Vertex AI

Generative AI continues to develop at a blistering pace, making it more important than ever that organizations have access to enterprise-ready capabilities to help them leverage this disruptive technology.  Harnessing the power of decades of Google’s research, innovation, and investment in AI, Google Cloud continues to make generative AI available…

Continue Reading Enterprise-ready generative AI models go GA in Vertex AI

Problem installing Dependencies for R – JupyterHub

I am trying to set up an R env and install base packages for all users. The package lives on gitlab and I am using the following to install it. What happens is that during the deployment everything works fine and I can see this package being built and end…

Continue Reading Problem installing Dependencies for R – JupyterHub

spring boot – How to generate an openapi.yaml file from source code within a GitLab pipeline?

I have created an openapi rest controller in Java Spring Boot. Now I would like to check that openapi spcification with a API linter like “Spectral” within a Gitlab-CI. Therefore I need a openapi.yaml or openapi.json file as input for that API-linter command line tool. So, how to create that…

Continue Reading spring boot – How to generate an openapi.yaml file from source code within a GitLab pipeline?

RStudio freezes when using CTRL+SHIFT+F10 to restart session after pushing commits using GIT – RStudio IDE

I am facing an annoying situation using RStudio IDE, I think it is a bug. Context: a project (Rproj) and using GIT+GITLAB as version control. Problem: whenever I push one or more commits (even very small ones) from the Rstudio IDE, and latter, restart the R session, the process freezes….

Continue Reading RStudio freezes when using CTRL+SHIFT+F10 to restart session after pushing commits using GIT – RStudio IDE

gromacs 2023.2 – Download, Browsing & More

gromacs 2023.2 – Download, Browsing & More | Fossies Archive “Fossies” – the Fresh Open Source Software Archive Contents of gromacs-2023.2.tar.gz (12 Jul 16:21, 41930578 Bytes) About: GROMACS performs molecular dynamics, i.e. simulates the Newtonian equations of motion for systems with hundreds to millions of particles (designed for biochemical molecules…

Continue Reading gromacs 2023.2 – Download, Browsing & More

test dependency ruby-gitaly-proto doesn’t exist

On Thu, 30 Mar 2023 19:19:44 +0200 Paul Gevers <elb…@debian.org> wrote: > autopkgtest [15:18:15]: test command1: preparing testbed > Reading package lists… > Building dependency tree… > Reading state information… > Correcting dependencies…Starting pkgProblemResolver with broken count: 1 > Starting 2 pkgProblemResolver with broken count: 1 > Investigating (0) autopkgtest-satdep:amd64…

Continue Reading test dependency ruby-gitaly-proto doesn’t exist

Residue 42 named TYR of a molecule in the input file was mapped to an entry in the topology database – User discussions

GROMACS version:2023GROMACS modification: YesHere post your questionkayode@kayode:~/Documents/Carrot/scolimoside$ gmx pdb2gmx -f REC.pdb -ignh🙂 GROMACS – gmx pdb2gmx, 2023 (-: Executable: /usr/local/gromacs/bin/gmxData prefix: /usr/local/gromacsWorking dir: /home/kayode/Documents/Carrot/scolimosideCommand line:gmx pdb2gmx -f REC.pdb -ignh Select the Force Field: From ‘/usr/local/gromacs/share/gromacs/top’: 1: AMBER03 protein, nucleic AMBER94 (Duan et al., J. Comp. Chem. 24, 1999-2012, 2003) 2:…

Continue Reading Residue 42 named TYR of a molecule in the input file was mapped to an entry in the topology database – User discussions

Evaluation of AlphaFold-Multimer prediction on multi-chain protein complexes

Abstract Motivation: Despite near-experimental accuracy on single-chain predictions, there is still scope for improvement among multimeric predictions. Methods like AlphaFold-Multimer and FoldDock can accurately model dimers. However, how well these methods fare on larger complexes is still unclear. Further, evaluation methods of the quality of multimeric complexes are not well…

Continue Reading Evaluation of AlphaFold-Multimer prediction on multi-chain protein complexes

GWAS Catalog at European Molecular Biology Laboratory (EMBL)

About the team/job We are looking for an experienced Bioinformatician Developer to join the GWAS Catalog development team within the Samples, Phenotypes and Ontologies team. You’ll be working on the GWAS Catalog Summary Statistics Infrastructure, and you’ll have the opportunity to influence the design and development of the system to…

Continue Reading GWAS Catalog at European Molecular Biology Laboratory (EMBL)

Aaron Reams – Software Architect

Aaron Reams Software Architect / Cloud Engineer Raleigh, North Carolina  • 919-987-6141  •  reamer@gmail.com  •  linkedin.com/in/aaronreams •  aaronreams.com  Software Architect & Cloud Engineer with over 20 years of experience using C#, Go, Angular and React developing innovative solutions to complex problems on Amazon Web Services (AWS), Google Cloud (GCP), Microsoft…

Continue Reading Aaron Reams – Software Architect

Production Project Leader job with EMBL EBI

We want a talented project leader to develop and manage the Ensembl production infrastructure and release cycles for our current and next generation website. Our infrastructure is under active redevelopment and offers an exciting opportunity for you to be at the forefront of its development and release. Our new infrastructure…

Continue Reading Production Project Leader job with EMBL EBI

Cancer Immunogenomics Bioinformatics Analyst – BayOne Solutions

Role: Cancer Immunogenomics Bioinformatics AnalystLocation: REMOTE ( need someone who can support in PST hours)Type: 6+ months Rate : $50/Hr. W2 Details: The Cancer Immunogenomics (CIgx) team is seeking a contract bioinformatics analyst with ~2+ years of experience (either in industry or an academic research lab during a degree) to…

Continue Reading Cancer Immunogenomics Bioinformatics Analyst – BayOne Solutions

The Global Automated Machine Learning Market size is

New York, June 20, 2023 (GLOBE NEWSWIRE) — Reportlinker.com announces the release of the report “Global Automated Machine Learning Market Size, Share & Industry Trends Analysis Report By Application, By Offering, By Vertical, By Regional Outlook and Forecast, 2023 – 2029” – www.reportlinker.com/p06469088/?utm_source=GNW This agility enables faster experimentation and iteration…

Continue Reading The Global Automated Machine Learning Market size is

CMake is for everyone :-) – Developers discussions

In the June 14th, Developer bi-weekly videoconference, several people indicated that they are reluctant to review changes to the GROMACS CMake infrastructure due to lack of familiarity. We actually face an alarming situation for project health when we can’t find 3 project participants willing and able to participate in merge…

Continue Reading CMake is for everyone :-) – Developers discussions

Increasing and excesive use of memory using OpenGL and AMD GPU – User discussions

swong June 14, 2023, 11:52am 1 GROMACS version: 2023.1GROMACS modification: Yes/NoHere post your question: I successfully compiled on a AMD/GPU node cluster. Each node has 8 gpus. So I’m running 8 simultaneous simulations on each node. As the simulations proceed the memory usage keeps increasing until some of the jobs…

Continue Reading Increasing and excesive use of memory using OpenGL and AMD GPU – User discussions

Vertex now open for everyone. What is it?

Google has made an important announcement regarding its generative AI support in Vertex AI, the company’s robust machine learning platform. This development signifies a significant milestone as these AI capabilities are now generally available to developers. With models such as PaLM 2, Imagen, and Codey at the core, Vertex AI…

Continue Reading Vertex now open for everyone. What is it?

Google Opens Access to Vertex AI Generative AI

on June 12, 2023 at 1:00 pm Google has opened access to the generative AI support for its machine learning platform Vertex AI after completing beta testing earlier this year. Businesses and other enterprises can now embed Vertex’s generative AI features into their own software, using the foundation models in…

Continue Reading Google Opens Access to Vertex AI Generative AI

Google’s Generative AI Platform “Vertex AI” Now Available

Google recently announced that their machine learning technology, known as “Vertex AI” is now generally available. Google’s advanced generative AI platform, Vertex AI, offers extensive tools and capabilities for designing and deploying machine learning models. Vertex AI provides developers with access to Google’s large language model, PaLM 2, as well…

Continue Reading Google’s Generative AI Platform “Vertex AI” Now Available

Google’s Generative AI Platform “Vertex” Now Available

Google Cloud’s Vertex AI is making waves in the world of artificial intelligence with the announcement that its generative AI support is now available for general use. This machine learning platform as a service (ML PaaS) product offers a full ecosystem of tools to help builders tune, deploy, and govern…

Continue Reading Google’s Generative AI Platform “Vertex” Now Available

dockerfile – How to run pytorch on gitlab-runner via docker?

I am learning gitlab ci/cd with a AI/Deep learning application in mind. But I wasn’t sure how pytorch could be used in a gitlab-runner. According to documentation: The following multi-platform Docker images are available: gitlab/gitlab-runner:latest based on Ubuntu. But my applications are based on the pytorch official image. I searched…

Continue Reading dockerfile – How to run pytorch on gitlab-runner via docker?

Google Cloud now offering free AI courses

Google (NASDAQ: GOOGL) has launched a series of free online courses to introduce users to generative artificial intelligence (AI) as the AI arms race with fellow Big Tech firms heats up. The search engine giant launched the courses this week through Google Cloud. They range from the fundamentals of large language models to…

Continue Reading Google Cloud now offering free AI courses

A Game-Changer for Modern Software Development

Introduction With artificial intelligence (AI) taking center stage in the world of technology over the past few months, developers require cutting-edge tools and platforms that enable them to stay ahead of the curve.  Google Cloud is at the forefront of AI-driven innovation, offering a comprehensive suite of generative AI solutions…

Continue Reading A Game-Changer for Modern Software Development