Tag: .gmt

Programs To Open .GMT Files

What is a GMT File? A GMT file, also known as Gene Matrix Transposed, is a specific type of file that is extensively used in the field of genomics and bioinformatics. Derived from the title, when a file carries a .gmt extension, it signifies that the file contains a matrix…

Continue Reading Programs To Open .GMT Files

STAGEs: A web-based tool that integrates data visualization and pathway enrichment analysis for gene expression studies

STAGEs is an interactive web app built using Streamlit (www.streamlit.io), and the running instance of the online app can be accessed via the website (kuanrongchan-stages-stages-vpgh46.streamlitapp.com/). The app can also run locally using the instructions detailed in GitHub (github.com/kuanrongchan/STAGES). Users can directly upload data from Excel spreadsheets, csv or txt files…

Continue Reading STAGEs: A web-based tool that integrates data visualization and pathway enrichment analysis for gene expression studies

Save a collection of gene-sets in a .gmt file format.

R: Save a collection of gene-sets in a .gmt file format. write_geneSets_to_gmt {massiveGST} R Documentation Save a collection of gene-sets in a .gmt file format. Description Write a collection of gene sets as arranged in this package in a gmt file format. Usage write_geneSets_to_gmt(gs, fileName) Arguments gs a character vector…

Continue Reading Save a collection of gene-sets in a .gmt file format.

working with .gmt files

working with .gmt files 3 Hi! I have downloaded a pathway data set in .gmt format form the GSEA website. I’m wondering how can I properly read this data set in R. Could anyone help me? Thank you!   myposts • 9.5k views • link updated 2 hours ago by…

Continue Reading working with .gmt files