Tag: GOI

Top ‘Fake News’ stories of 2021

Fake news spreads like wild fire. It is tough for the average mobile phone user to differentiate between the different messages that come on WhatsApp or show up on Facebook or Twitter feeds. But while government and private fact check machineries keep refuting such dangerous false information circulating on social…

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Change log2FoldChange range – plotMA

You can use base R graphics to make these plots. The data is sitting there in columns of the res object, so you can filter it directly, and use boolean vectors to pick out the things you need: # make sure there are no NA values sum(is.na(res$log2FoldChange)) # choose some…

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Large-scale genome-wide study reveals climate adaptive variability in a cosmopolitan pest

Genomic data The foundational resource for this study was a dataset of 40,107,925 nuclear SNPs sequenced from a worldwide sample of 532 DBM individuals collected in 114 different sites based on our previous project15. DNA was extracted from each of the 532 individuals using DNeasy Blood and Tissue Kit (Qiagen,…

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how to build an interaction network in R

how to build an interaction network in R 0 I’m investigating the role of my gene of interest (GOI) in cancer, using gene co-expression analysis (guilty by association). Performing gene co-expression analysis, I’ve detected my GOI associated with 163 other genes in a module. I’ve already performed an enrichment analysis…

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