Tag: GUI

SCHNAPPs – Single Cell sHiNy APPlication(s)

Abstract : Single-cell RNA-sequencing (scRNAseq) experiments are becoming a standard tool for bench-scientists to explore the cellular diversity present in all tissues. Data produced by scRNAseq is technically complex and requires analytical workflows that are an active field of bioinformatics research, whereas a wealth of biological background knowledge is needed…

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List of software for nanostructures modeling

Three dimensional molecular model of an all-carbon tubular fullerene. This is a list of computer programs that are used to model nanostructures at the levels of classical mechanics[1] and quantum mechanics. Ascalaph Designer Atomistix ToolKit and Virtual NanoLab[2] CST Studio Suite[3] CoNTub Deneb[4] – graphical user interface (GUI) for SIESTA,…

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Add module descriptors for javadoc

$ mvn javadoc:aggregate … [INFO] — maven-javadoc-plugin:3.0.1:aggregate (default-cli) @ biojava-legacy — [ERROR] no module descriptor for org.biojava:biojava-legacy [ERROR] no module descriptor for org.biojava:bytecode [ERROR] no module descriptor for org.biojava:core [ERROR] no module descriptor for org.biojava:alignment [ERROR] no module descriptor for org.biojava:biosql [ERROR] no module descriptor for org.biojava:blast [ERROR] no module…

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Updating scikit-learn to latest version with Anaconda environment fails with http error 000

I use Anaconda3 installed on my pc Win10 64bits. I noticed it runs with an outdated scikit learn version (0.21.3), and I am trying to update it (0.24.1 available on repo.anaconda.com/pkgs/main/win-64/) I do this: cmd I go in the script directory D:ProgramDataAnaconda3Scripts conda update scikit-learn it fails with this error…

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a Burp Suite extension for automating OpenAPI-based APIs security assessments

Swurg is a Burp Suite extension designed for OpenAPI testing. The OpenAPI Specification (OAS) defines a standard, programming language-agnostic interface description for REST APIs, which allows both humans and computers to discover and understand the capabilities of a service without requiring access to source code, additional documentation, or inspection of…

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How to use the Interactive Desktop on Open OnDemand

The Interactive Desktop app provides a grapical user interface that runs as a batch job on pronto. Any module that can be loaded in a normal Pronto batch job can be loaded within the interactive desktop. In addition, the following modules have easy-to-use launcher shortcuts. Matlab Mathematica RStudio Getting Started…

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New biosensors shine a light on CRISPR gene editing — ScienceDaily

Detecting the activity of CRISPR gene editing tools in organisms with the naked eye and an ultraviolet flashlight is now possible using technology developed at the Department of Energy’s Oak Ridge National Laboratory. Scientists demonstrated these real-time detection tools in plants and anticipate their use in animals, bacteria and fungi…

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Index of /~psgendb/birchhomedir/doc/local/pkg/PathVisio2.0.11/modules

Name Last modified Size Description Parent Directory   –   org.pathvisio.core.jar 2012-03-08 16:50 1.4M   org.pathvisio.core/ 2012-03-08 16:50 –   org.pathvisio.deskto..> 2012-03-08 16:50 238K   org.pathvisio.desktop/ 2012-03-08 16:50 –   org.pathvisio.gex/ 2012-03-08 16:50 –   org.pathvisio.gexplu..> 2012-03-08 16:50 53K   org.pathvisio.gui.jar 2012-03-08 16:50 208K   org.pathvisio.gui/ 2012-03-08 16:50 –  …

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[slurm-users] smap on Centos7

Hi, This is my first post. :-) Where can I find the ‘smap’ gui for Cenos7 ? I can’t seem to locate the package that provides this. I didn’t get any results with ‘yum whatprovides smap’. In contrast, ‘yum whatprovides sview’ gives me ‘slurm-gui’. Shouldn’t smap be part of…

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Bioconductor – interactiveDisplay

    This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see interactiveDisplay. Package for enabling powerful shiny web displays of Bioconductor objects Bioconductor version: 3.2 The interactiveDisplay package contains the methods needed to generate interactive Shiny based display methods for Bioconductor objects. Author: Shawn…

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Repo template to use a Linux Desktop Application on a binder / jupyterhub

Generate a Git repository that can run any Linux GUI application in the browser via mybinder.org or any JupyterHub from this template repository! Uses jupyter-remote-desktop-proxy to work. How to use this reop 1. Create a new repo using this as a template Use the Use this template button on GitHub….

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iCOMIC: a graphical interface-driven bioinformatics pipeline for analyzing cancer omics data

Abstract Despite the tremendous increase in omics data generated by modern sequencing technologies, their analysis can be tricky and often requires substantial expertise in bioinformatics. To address this concern, we have developed a user-friendly pipeline to analyze (cancer) genomic data that takes in raw sequencing data (FASTQ format) as input…

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Identification of Prognosis-Associated Biomarkers in Thyroid Carcinoma

Introduction Thyroid cancer (TC) is a common endocrine malignancy with a rapidly increasing incidence worldwide, and the estimated new cases and deaths are notably higher in women than in men.1 Papillary thyroid carcinoma (PTC) is identified as the most common pathological type of TC, and accounts for approximately 80–85% of…

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bioinformatics scientist – Besto

Bioinformatics Scientist Agexplorer Com . Learning Bioinformatics The Scientist Magazine . Bioinformatics Scientist . Bioinformatics Scientist . Learning Bioinformatics The Scientist Magazine . What Does A Bioinformatics Scientist Do . Bioinformatics Understanding Of Living Systems Through . Next Generation Bioinformatics Advaita Bioinformatics . Bioinformatics Scientist Science Engineering Career . Bioinformatics…

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Bioconductor – MSGFgui

DOI: 10.18129/B9.bioc.MSGFgui     A shiny GUI for MSGFplus Bioconductor version: Release (3.5) This package makes it possible to perform analyses using the MSGFplus package in a GUI environment. Furthermore it enables the user to investigate the results using interactive plots, summary statistics and filtering. Lastly it exposes the current…

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Bioconductor – HilbertVis

Hilbert curve visualization Bioconductor version: 2.6 Functions to visualize long vectors of integer data by means of Hilbert curves Author: Simon Anders <anders at fs.tum.de> Maintainer: Simon Anders <anders at fs.tum.de> To install this package, start R and enter: source(“http://bioconductor.org/biocLite.R”) biocLite(“HilbertVis”) To cite this package in a publication, start R…

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See AI Training at Google Developer Student Clubs Islamic University of Gaza

يعطيكم العافية أصدقاءنا في GDSC 👋 .. حيكون عنا في الفترة القادمة Course متخصص في الذكاء الاصطناعي: 💬 التعريف بالـ Course: هو تدريب مختص بالذكاء الاصطناعي مقدم من نادي الطلبة المطورين في الجامعة الإسلامية بغزة ،حيث سيتناول التدريب مجموعة من المواضيع العملية المختلفة مثل: – Machine Learning – Data Processing…

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how to install packages in r

In classic R you will have to press the tab button to show the functions on the screen, although it should be noted that if the package contains many functions not all will be shown, as is the case with the ggplot2 package: Sometimes it can be interesting to inspect…

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Error while running MEGAX

Error while running MEGAX 0 I am running the latest version of MEGA i.e MEGAX. I am trying to run the command megacc but it is throwing an error. My sequences.fas file contains the trimmed multiple sequence alignment (MSA) of 16S rRNA sequences of 1403 organisms in a fasta format….

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Pybedtools error sans

Pybedtools error sans 20-08-2021 pysam – Error when I install samtools for python on windows – i trying install pysam, pybedtools modules on python got error: ($i=1; $i[email protected] temp]$ conda install pysam bedtools hisat2 [ snip. However,…

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biopython | DelphiFeeds.com

biopython | DelphiFeeds.com Story Category: biopython Hands-On Bioinformatics With These 6 Powerful Python Libs Muhammad Azizul Hakim Are you looking for tools to work in Bioinformatics…

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Output Polar Contacts Between Chains to Text File

  PYMOL: Output Polar Contacts Between Chains to Text File 0   I am new to PyMOL but have a very specific task that I need to do. I have a PDB structure file of protein homo-oligomer, and I want to use PyMol to determine polar contacts between chain A…

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