Tag: HGU133Plus2

hgu133plus2.db Affymetrix Human Genome U133 Plus 2.0 Array annotation data (chip hgu133plus2) Affymetrix Human Genome U133 Plus 2.0 Array annotation data (chip hgu133plus2) assembled using data from public repositories Author Marc Carlson, Seth Falcon, Herve Pages, Nianhua Li Maintainer Biocore Data Team To install this package, start R and enter:…

DOI: 10.18129/B9.bioc.epivizrChart     This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see epivizrChart. R interface to epiviz web components Bioconductor version: 3.14 This package provides an API for interactive visualization of genomic data using epiviz web components. Objects in R/BioConductor can be used…

DOI: 10.18129/B9.bioc.rtracklayer     R interface to genome annotation files and the UCSC genome browser Bioconductor version: Release (3.6) Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may…

.. BSgenome.Amellifera.BeeBase.assembly4.html BSgenome.Amellifera.UCSC.apiMel2.html BSgenome.Athaliana.TAIR.01222004.html BSgenome.Athaliana.TAIR.04232008.html BSgenome.Btaurus.UCSC.bosTau3.html BSgenome.Btaurus.UCSC.bosTau4.html BSgenome.Celegans.UCSC.ce2.html BSgenome.Cfamiliaris.UCSC.canFam2.html BSgenome.Dmelanogaster.UCSC.dm2.html BSgenome.Dmelanogaster.UCSC.dm3.html BSgenome.Drerio.UCSC.danRer5.html BSgenome.Ecoli.NCBI.20080805.html BSgenome.Ggallus.UCSC.galGal3.html BSgenome.Hsapiens.UCSC.hg17.html BSgenome.Hsapiens.UCSC.hg18.html BSgenome.Hsapiens.UCSC.hg19.html BSgenome.Mmusculus.UCSC.mm8.html BSgenome.Mmusculus.UCSC.mm9.html BSgenome.Ptroglodytes.UCSC.panTro2.html BSgenome.Rnorvegicus.UCSC.rn4.html BSgenome.Scerevisiae.UCSC.sacCer1.html BSgenome.Scerevisiae.UCSC.sacCer2.html GGHumanMethCancerPanelv1.db.html GO.db.html Hs6UG171.db.html HuExExonProbesetLocationHg18.html HuExExonProbesetLocationHg19.html HuO22.db.html IlluminaHumanMethylation27k.db.html JazaeriMetaData.db.html KEGG.db.html LAPOINTE.db.html Masks.Dmelanogaster.UCSC.dm3.html MoExExonProbesetLocation.html Mu15v1.db.html Mu22v3.db.html Norway981.db.html OperonHumanV3.db.html PFAM.db.html POCRCannotation.db.html PartheenMetaData.db.html RaExExonProbesetLocation.html RmiR.Hs.miRNA.html RmiR.hsa.html Roberts2005Annotation.db.html SHDZ.db.html SNPlocs.Hsapiens.dbSNP.20071016.html SNPlocs.Hsapiens.dbSNP.20080617.html SNPlocs.Hsapiens.dbSNP.20090506.html…

DOI: 10.18129/B9.bioc.maPredictDSC     This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see maPredictDSC. Phenotype prediction using microarray data: approach of the best overall team in the IMPROVER Diagnostic Signature Challenge Bioconductor version: 3.13 This package implements the classification pipeline of the best overall…

DOI: 10.18129/B9.bioc.sampleClassifier     This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see sampleClassifier. Sample Classifier Bioconductor version: 3.13 The package is designed to classify microarray RNA-seq gene expression profiles. Author: Khadija El Amrani [aut, cre] Maintainer: Khadija El Amrani <a.khadija at gmx.de> Citation…

Dear Bioc, Following the rtracklayer documentation, section 2.2.4, ‘A Shortcut’, I encounter the following error browseGenome (subTargetTrack) Error in validObject(.Object) :invalid class “ucscCart” object: superclass “ANYTHING” not defined in the environment of the object’s class traceback () 13: stop(msg, ” “, errors, domain = NA)12: validObject(.Object)11: initialize(value, …)10: initialize(value, …)9:…

DOI: 10.18129/B9.bioc.geecc     This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see geecc. Gene Set Enrichment Analysis Extended to Contingency Cubes Bioconductor version: 3.11 Use log-linear models to perform hypergeometric and chi-squared tests for gene…