Tag: HPC

Hello, all supported build flags are available with “./configure –help” command. On of them is “–with-systemdsystemunitdir=DIR”, which will allow you to specify the directory for the systemd service files for all Slurm daemons. The most important of the flags is imho the “–prefix”, which sets the installation directory. I’ll describe my build setup shortly…

Analysing biological datasets is nearly always a multi-step process involving many interconnected stages. Even so, the lack of transparent approaches to managing complex data analysis pipelines remains a common challenge in the life sciences. Another limiting factor is that completing such pipelines often requires in-depth knowledge of many data analysis…

Summary The lab of Dr. Kyle Eagen (www.eagenlab.org) at Baylor College of Medicine focuses on elucidating how DNA folds within cells and how DNA misfolding relates to human disease. Baylor College of Medicine, one of the top ranked medical schools in the country, is well known for its exceptional,…

We have an exciting contract opportunity for a Bioinformatics analyst to support a collaboration between the Biologics Science and Technology group and Genomics Research Center, in which we are using genomics tools to optimize the development of better Chinese Hamster Ovary (CHO) cells for biologics manufacturing. The ideal candidate will…

Job Description To discuss more about this job opportunity, please reach out to Chitrank Rastogi (LinkedIn URL – www.linkedin.com/in/chitrank-rastogi-55119a102/), email your updated resume at chitrank.rastogi@collabera.com or give me a call at (425) 523-1648. Thank you! Job Description:Job Roles & Responsibilities: We have an exciting contract opportunity for a Bioinformatics analyst…

Description du poste Bioinformatics Analyst Supports a collaboration between the Biologics Science and Technology group and Genomics Research Center, in which we are using genomics tools to optimize the development of better Chinese Hamster Ovary (CHO) cells for biologics manufacturing. The ideal candidate will have broad experience in genomics data…

Job Description A Bioinformatics position is available immediately at the Cancer Science Institute (a part of The National University of Singapore) in the laboratory of Dr. Sriram Sridharan. The research will focus in the broad area of replication stress, DNA damage and genome integrity.  This is an exciting opportunity to…

Experience 2-4 year Salary $170,000-$180,000 Location San Francisco, CA, USA Job Function Bioinformatics Scientist Industry Information Technology Qualification Degree in Computer Science, PhD Degree, Degree in Bioinformatics, Degree in Computational Biology, Degree in Computational Science, Degree in Biomedical Engineering Key Skills Bioconductor, CRISPR technology, Data science techniques, Large data sets,…

Job Description To discuss more about this job opportunity, please reach out to Chitrank Rastogi (LinkedIn URL – www.linkedin.com/in/chitrank-rastogi-55119a102/), email your updated resume at chitrank.rastogi@collabera.com or give me a call at (425) 523-1648. Thank you! Job Description:Job Roles & Responsibilities: The Genomic Research Center Computational Oncology group (GRC-CO) is seeking…

How much RAM for scRNAseq 200K cells? 0 Hi all, Sorry if this has been asked multiple times before – I’m wondering what’s possible in the current landscape of bioinformatics tools. I’m planning on sequencing a set of 200,000 cells or so using 10X’s fixed RNA profiling technology. I’d like…

Introduction ANGSD is a software for analyzing next generation sequencing data intended for use with mapped reads to imputed genotype probabilities. ANGSD can work with BAM files but is not meant for manipulating them. SAMTools is best for that. ANGSD is ideal for use with low to medium depth genomic…

I am trying to run fastqc for fastq.gz files in RNA-seq Data analysis and I have written a PBS script. However, I am encountering the following error Can’t exec “java”: No such file or directory at /home/paksls/Atreya/software/FastQC/fastqc line 307 I have written the following script: #!/bin/bash #PBS -l nodes=1:ppn=6,pmem=10240MB,walltime=04:00:00 #PBS…

Job # 076742 Job Title Post Doc – Genomics and Bioinformatics Location Syracuse, NY Pay Range Commensurate with Experience FLSA Status Exempt Hours As determined by PI. Job Type Full-time Rank Post Doc Campus Syracuse, NY Unionized Position Code Not Applicable Job Description The Ahmed-Brimah Lab at Syracuse University invites…

We are seeking a highly motivated and dynamic researcher with expertise in analysis and interpretation of high-throughput sequencing (transcriptomics, epigenomics etc.) and mass spectrometry (proteomics, metabolomics etc.) to work in the Zierath Group in collaboration with Barrès Group and Deshmukh Group. The position is a 3-year position to start March…

Job Description A Bioinformatics position is available immediately at the Cancer Science Institute (a part of The National University of Singapore) in the laboratory of Dr. Sriram Sridharan. The research will focus in the broad area of replication stress, DNA damage and genome integrity.  This is an exciting opportunity to…

sview GUI to view and modify SLURM state Maintainer: Debian HPC Team Section: admin Install sview Debian apt-get install sview Click to copy Ubuntu apt-get install sview Click to copy Kali Linux apt-get install sview Click to copy Fedora dnf install sview Click to copy Raspbian apt-get install sview Click…

I’m using RandomizedSearchCV to optimize and evaluate several ML models. I’m trying to run the optimization process using joblib Parallel(). But, when running my code on an HPC using 16 cores, only two of them are used. jobs = 16 x = Parallel(n_jobs=jobs, backend=’multiprocessing’, verbose=3)(delayed(fit)(m, X_train, y_train, n_iter= 3, cv…

This session teaches participants how to use the Digital Research Alliance of Canada’s queuing environment on the national systems, using the job scheduler Slurm. Learn how the scheduler works, how it allocates jobs, what are reasonable requests to minimize wait time, how to make the best use of the resources…

Riyadh, Saudi Arabia Center for Genomic Medicine Full time The Center for Genomic Medicine (CGM) plans to expand its IT and bioinformatics teams with experts who will be responsible for maintaining the bioinformatics IT infrastructure and developing, maintaining, and execution of computational pipelines…

Hello all,I have created a Linux cluster with ssh and NFS. I have installed lammps in the NFS folder. I have verified that the cluster works properly with openmpi and the communication is good. But when I run lammps, after reading the data file it gets stuck on the first…

Postdoctoral Position at Eyam Vaccines and Immunotherapeutics – Bioinformatician  Eyam Vaccines and Immunotherapeutics (Eyam) is seeking an outstanding Bioinformatician. This is a unique opportunity to experience collaborative research with leading industry and academic experts. Under the direction of the Director of Bioinformatics and the Chief Scientific Officer, Dr. Paolo Ribeca…

Location: Mississauga, ON Duration: 12+ Months Who We Are Looking ForWe are looking for an experienced Bioinformatics Data Scientist, with a proven track record of generating insights and building predictive models from biological data.For this position, we will consider applicants focused on Data Science applied to biological data with 3…

Impact HealthcareRoche Sequencing is not only changing science, but we are changing lives. Our software teams are laying the groundwork for the future by developing powerful bioinformatics algorithms, data analysis tools, and software/systems infrastructures so researchers and clinicians can make better health decisions faster. The path to curing cancer lies…

About the team/jobThe Data Science Centre, launched in February 2022 to promote cutting-edge research and services in Data Science across all of EMBL, is looking for a bioinformatician, computational biologist or computer scientist as a Data Management Coordinator. The Data Science Centre will ensure that biological research data at our…

Nationwide, Company Overview At Memorial Sloan Kettering (MSK), we’re not only changing the way we treat cancer, but also the way the world thinks about it. By working together and pushing forward with innovation and discovery, we’re driving excellence and improving outcomes. We’re treating cancer, one patient at a time….

I’m trying to use a 2 pass STAR mapping strategy (also explained here informatics.fas.harvard.edu/rsem-example-on-odyssey.html), but I’m getting an error. I’ve read through this page [https://github.com/alexdobin/STAR/issues/181] and I have a similar issue, but the discussed solutions don’t seem to help. Perhaps this is more a snakemake issue rather than a STAR…

Responsibilities Requisition # HRC0992682 The newly formed Precision Biomarkers Laboratories (PBL) at Cedars-Sinai is seeking a highly skilled bioinformatics professional with an expertise in statistical methods and data applications. This role will be responsible for developing robust statistical measures to evaluate, analyze, and integrate proteomics data for continuous quality control…

Vir Biotechnology is a commercial-stage immunology company focused on combining immunologic insights with cutting-edge technologies to treat and prevent serious infectious diseases. Vir has assembled four technology platforms that are designed to stimulate and enhance the immune system by exploiting critical observations of natural immune processes. Its current development pipeline…

2022-07-17 Valued Tier3 HPC users of NHR@FAU, as briefly announced in the HPC Cafe in June, we now started with switching from Woody with Ubuntu 18.04 and Torque to Woody-NG (“Woody Next Generation”) with AlmaLinux8 as operating system and Slurm as batch system. Woody-NG uses the same operating system as…

Job description Location: Boca Raton, Florida Job Description: The College of Medicine of Florida Atlantic University, the 5th public university in Florida, is seeking a Bioinformatics Postdoctoral Associate with experience in bioinformatics pipeline development and genomics data analysis for a Bioinformatics and Computational Genomics laboratory which focuses on high-throughput…

Job:Bioinformatics Pipeline Developer – NatureMetrics (Guildford, Surrey) 0 I’m reaching the end of my recruitment round, have one more role to come after this (hopefully advertised this week); Applications are invited for a Bioinformatics Pipeline Developer to join an expanding science-based SME. The successful candidate will work closely with other…

T.Dem June 25, 2022, 5:41pm #1 Dear LAMMPS users, I am trying to run Monte Carlo simulations using reaxff to study the oxygen coverage on a Pt nanoparticle. I defined my oxygen reservoir using the chemical potential definition for a perfect gas. Initially, the system is very small (350 atoms)…

Contract Type: Staff Member Location: EMBL-EBI, Hinxton near Cambridge, UK Job Function: Senior Technical Officer (gr. 6-8) Contract Duration-Length of Time (years/months): 1 year (until grant-end date of 30/10/2023) Contract Duration-Is this renewable to 9 years?: No Advertised Grade-Grading: Grade 6 (monthly salary starting at £3,143.06 after tax plus benefits) About the team/job We are seeking…

parallel downloads from SRA with SRA toolkit or other ways to speed up downloads 0 Is there a way to parallelize downloads from NCBI using SRAToolkit on a HPC cluster? I tried using GNU parallel but I can not actually tell if the downloads are doing anything: cat < /home/ptellier/scratch/phillip/data/escc_data/SRA_accessions.txt…

3 month , My first post in the new student group , The false-positive mutation appears because duplicates mark Not enough ？, Tells the story of supplementary read It won’t be GATK MarkDuplicates Marked as duplicates The problem of . after , In response to this question , I began…

OSTHUS brings innovative scientific informatics applications to many of the world’s largest pharmaceutical, Crop Sciences and Life Sciences companies. We provide both software solutions as well as consulting expertise to help guide your business strategy in adopting valuable technologies. With teams of unique interdisciplinary experts, we help our clients solve…

<!– .slide: data-background=”raw.githubusercontent.com/maxulysse/maxulysse.github.io/main/assets/img/svg/green_white_bg.svg&#8221; –> <a href=”nf-co.re”><img src=”raw.githubusercontent.com/nf-core/logos/master/nf-core-logos/nf-core-logo-darkbg.svg&#8221; width=”60%”></img></a> # What is nf-core\? [Maxime U Garcia](https://maxulysse.github.io/) ▸ [<i class=”fa fa-twitter” aria-hidden=”true”></i>@gau](https://twitter.com/gau/) | [<i class=”fa fa-github” aria-hidden=”true”></i>@maxulysse](https://github.com/maxulysse/) [Karolinska Institutet](https://ki.se/) | [Science for Life Laboratory](https://www.scilifelab.se/) Sweden — ## Overview – 🗄️ [Barntumörbanken](https://ki.se/forskning/barntumorbanken/) – 🧬 [NGI](https://ngisweden.scilifelab.se/) – 🍬 [Nextflow](https://www.nextflow.io/) – 🧙 [nf-core](https://nf-co.re/) — ##…

This position may be based out of Santa Clara, California, USA, with remote work locations possible in The United States.Impact HealthcareRoche Sequencing is not only changing science, but we are changing lives. Our software teams are laying the groundwork for the future by developing powerful bioinformatics algorithms, data analysis tools,…

Reference-based alignment using MUSKET 1 I’m running MUSKET on my dataset trimmed_data.tar.gz using 1000 threads, 2000 threads, and 4000 threads on a HPC. I’ve been unable to obtain any results because the software seems to be running for a long time. ./../musket-1.1/musket -k 90 600000000 -p 1000 -zlib 9 -ino…

Singapore, April 22, 2022 — Two collaborations were signed today between APBioNET and NSCC as well as between AMBIS and NSCC to strengthen cooperation to develop and upskill the field of bioinformatics in Singapore. The proposed activities include developing high-performance computing (HPC) capability and talent development for bioinformatics, education and…

I have a workstation with 4 GPUs. I’ve setup my machine as a single-node slurm instance. I use slurm to automate complex job pipelines in the background while I work in the foreground. So I’m not doing much HPC, I’m just using SLURM to handle job DAGs. I have a…

Fricke, R., Eschmeyer, W. N. & van der Laan, R. (eds). Eschmeyer’s Catalog of Fishes: Genera, Species, Rererences. researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp. Electronic version, Accessed 15 October 2021. Nelson, J. S. Fishes of the World 4th edn, 372 (Wiley, 2006). Google Scholar  Chen, X. H., Lin, K. B. & Wang, X. W. Outbreaks…

—–BEGIN PGP SIGNED MESSAGE—– Hash: SHA512 Format: 1.8 Date: Tue, 22 Mar 2022 21:59:40 +0100 Source: slurm-wlm Architecture: source Version: 21.08.6-1 Distribution: unstable Urgency: medium Maintainer: Debian HPC Team <debian-…@lists.debian.org> Changed-By: Gennaro Oliva <oliv…@na.icar.cnr.it> Changes: slurm-wlm (21.08.6-1) unstable; urgency=medium . * New upstream release * Remove fix-typos patch included upstream…

The largest AI models can require months to train on today’s computing platforms. That’s too slow for businesses. AI, high performance computing and data analytics are growing in complexity with some models, like large language ones, reaching trillions of parameters. The NVIDIA Hopper architecture is built from the ground up…

DeepMind’s AlphaFold 2 grabbed headlines last year by leveraging a transformer-based model architecture to achieve atomic accuracy in protein structure prediction. While the development of deep neural networks (DNNs) has enabled significant performance improvements across a variety of natural language processing and computer vision tasks, AlphaFold’s success showed that DNNs…

Hello, I’m trying to setup my first CycleCloud cluster, but I keep getting error in the initialization phase. In particular, it complains about not finding nodes for “nodearray hpc”. The full error message: CycleCloud Version: 8.2.0-1616 Cluster: Test2 (version 8.2.x) ============================== Status: Error [Software Configuration] (retrying) Start Time: 2022-03-13T17:31:29.377Z Description:…

please have a look if you might be interested – I’ll post directly below here as well. Timescale, as ever, is tight. Do send emails if you might be interested. Subject: Extended deadline – computational scientist positions at STFC (UK) Senior Computational Scientists – Accelerator Development and Multiscale Workflows Science…

Look for more than answers. At Quest, we are on a continuous journey of discovery and development. It’s this attitude that has made us an industry leader and the #1 Diagnostic Lab in the US. For those joining us, we offer exciting and fast-moving career opportunities where you can affect…

Here are the most common types of dependencies you can specify: after:job_id[:jobid…]                      This job can begin execution after the specified jobs have begun execution. afterany:job_id[:jobid…]                      This job can begin execution…

Hi there, I am recently want to try running an oxidation process.Here is my codes and report from the cluster.it can run the minimize part. After the minimization,it seems that it stop after printing” setting up verlet run”.Can you help me? Thank you So much!package omp 4 neigh no#newton onunits…

Research Associate Dr. Brent Richards is seeking a Research Associate to assist in the creation and management of a research program to improve clinical care through the use of computational genomics. The job will take place at the Lady Davis Institute of the Jewish General Hospital, a McGill University teaching…

Example: how to create temporary folders in a slurm script hpc script #!/bin/bash #SBATCH –job-name=sand_min #SBATCH -N 1 #SBATCH -n 1 ##SBATCH –gres=gpu:1 #SBATCH –partition=shortq7 #SBATCH –exclude=node[007,041,046],nodeamd[010-014],nodeeng[009-010],nodegpu001,nodenviv[100001-100002,100004-100015] #SBATCH –mail-type=ALL #SBATCH –time=6:00:00 echo “NODE NAMES = “$SLURM_NODELIST echo “CUDA_VISIBLE_DEVICES = “$CUDA_VISIBLE_DEVICES date # # Load the necessary modules, etc… # module…

M. Madan Babus Group and the Center for Data-Driven Discovery in the Department of Structural Biology is seeking a highly driven, Full time Machine Learning Research Scientist support the Kalodimos and Babu Groups on the Blue Sky Initiative “Seeing the Invisible in Protein Kinases.” This project is supported by $35…

Cloud computing and digital transformation have been powerful enablers for genomics. Genomics is expected to be an exabase-scale big data domain by 2025, posing data acquisition and storage challenges on par with other major generators of big data. Embracing digital transformation offers a practically limitless ability to meet the genomic…

I am trying to create an automatic chain of commands for analyzing biological data. For this I am using Samtools in Slurm cluster. This line below is one of the commands I run for the analysis: samtools view -h file.sam | awk ‘$6 ~ /N/ || $1 ~ /^@/’ |…

#114267 Sr. Bioinformatics Scientist-Project Manager Filing Deadline: Mon 2/14/2022 UCSD Layoff from Career Appointment: Apply by 02/02/2022 for consideration with preference for rehire. All layoff applicants should contact their Employment Advisor. Special Selection Applicants: Apply by 02/14/2022. Eligible Special Selection clients should contact their Disability Counselor for assistance. The UCSD…

The Bioinformatics Scientist will take lab-generated data and create computational models that allow further manipulation and experimentation, perform incremental analysis required to process large amounts of data generated in a high-throughput Next Generation Sequencing (NGS) laboratory devoted to analysis of genomics data with a focus on long- and short-read sequencing…

Hello, I have some questions about adding nodes in configless mode. My version of SLURM is 21.08.5. I gave logs below to ease the read of the message. First, is “scontrol reconfigure” equal to “scontrol reconfig” ? Then, I have a strange behaviour at node addition. I have an healthy…

New Job opportunity posted by European Bioinformatics Institute (EMBL-EBI): We are seeking a HPC engineer to join our Compute team within our Technical Services Cluster (TSC), serving an institute of over 800 researchers and technical staff. You will be working closely with members of the department, and more widely with…

Dear LAMMPS users, I want to run a LAMMPS simulation using HPC that include the Linux version of LAMMPS (14 Dec 2021), but I face the below error just after running the simulation: ERROR: Unrecognized atom style ‘full’ is part of the MOLECULE package which is not enabled in this…

Anyone know any clever snakemake/SLURM tricks to run a big analysis with limited storage? 1 I am using a SLURM HPC to run jobs and have ran into issues with storage. I have 3TB storage, and want to run over 1000 publicly available RNAseq data through my pipeline, which includes…

The University of Nevada, Reno (UNR) appreciates your interest in employment at our growing institution. We want your application process to go smoothly and quickly. Final applications must be submitted prior to the close of the recruitment. If you need assistance or have questions regarding the application process, please contact…

Hi, I was relatively recently told about slurm, however, as usual, I did not have time to go into details and had to quickly write scripts and subsample them “to not waste time”. Well, since recently, constantly goes out of timeout and scripts “do not finish” as simply not enough…

Optical computing startup Lightelligence has developed a new GPU that outstrips the very best GPUs on the planet — at least in the most challenging mathematical problems — with the introduction of the Photonic Arithmetic Computing Engine (PACE). VIEW GALLERY – 2 IMAGES Lightelligence’s new Photonic Arithmetic Computing Engine (PACE)…

This blog post was contributed by Ankit Sethia, PhD, and Timothy Harkins, PhD, at NVIDIA Parabricks, and Olivia Choudhury, PhD,  Sujaya Srinivasan, and Aniket Deshpande at AWS. This blog provides an overview of NVIDIA’s Clara Parabricks along with a guide on how to use Parabricks within the AWS Marketplace. It…

Welcome to join another exciting community workshop with Juju and related projects! This time @mmrezaie will take us through an interesting deployment of Slurm charms to build a HPC cluster with juju and lxd. Meeting link: meet.google.com/ceh-zber-jnf Date: Fri 2021-12-17 09:00 – 10:00 (UTC) Abstract In this workshop we will…

Phylogenetics is an analytical tool that quickly analyzes genomic data to provide invaluable insights into the evolution and spread of a pathogen, thereby allowing public health officials and governments to respond to it in a timely fashion. During the coronavirus disease 2019 (COVID-19) pandemic, phylogenetics, like many other pre-pandemic tools,…

16SMaRT is a bioinformatics analysis pipeline for 16s rRNA gene sequencing data. 16SMaRT is a “one-click” solution towards performing microbial community analysis of amplicon sequencing data. 16SMaRT aims to be your go-to solution for your next microbiome/metagenomics project. The primary objective of 16SMaRT analysis is to determine what genes are…

I ran an HF calculation in Gaussian with the option formchk, and I’d like to take a look at the output orbitals. Usually I would use Gaussview, but our HPC system’s interactive desktop is down right now. The Gaussian documentation states:” formchk converts the data in a Gaussian checkpoint file…

Reports to: Samra Turajlic [C] Job Description: Project summary An exciting opportunity to be part of a pioneering biomedical research institute, dedicated to innovation and science, in the laboratory of Samra Turajlic (Cancer Dynamics, www.crick.ac.uk/research/labs/samra-turajlic). We are seeking a highly collaborative and self-motivated post-doctoral bioinformatician to work within our comprehensive…

Macbook Pro or PC laptop for bioinformatics? 3 I would like to be able to run most any of the typical ChIP-seq and RNA-seq tools (e.g. MACS2) from a home laptop computer; in other words, without access to HPC. I will be working with data from the relatively small eukaryotic…

Unable to download fastq files in parallel / SOS 0 Hi! Very new to all this so bear with me if I’m using incorrect terminology. Also english is my second language. I’m trying to download my fastq files in parallel but it doesn’t work and I keep receiving this error:…

Listing Results Gromacs Contact Map Contact maps using Gromacs ResearchGate Just Now Researchgate.net View All Contact maps using Gromacs ? I used gmx mdmat in gromacs to create contact maps, but it seems that the mdmat gives the minimum average distance rather than the average centre-of-mass distance. Estimated Reading Time:…

Ensembl vep singularity 0 Hello all, I would like to use variant effect prédictor on an hpc cluster. For that i use singularity with the docker image of vep : singularity pull –name vep.sif But i have a problem to use one plugin because a perl module is missing….

Illumina’s Customer Collaboration & Innovation (CCI) team transforms the relationship between top-tier customers and our Product Development organization, and we are looking for a select individual to join the team as a Bioinformatics Software Engineer 2. The team works externally with a small number of Illumina’s top customers to design…

We are looking for an enthusiastic and ambitious postdoctoral fellow to study the pathophysiological bases of vascular anomalies via an integrated analysis of “omics” data (incl. single cell and bulk transcriptome, methylome, genome). The postdoctoral fellow will participate in all the omic aspects of the studies, from data analysis and…

is one of the nation’s top-ranked medical schools. For 175 years, NYU Grossman School of Medicine has trained thousands of physicians and scientists who have helped to shape the course of medical history and enrich the lives of countless people. An integral part of , the Grossman School of Medicine…

Illumina’s Customer Collaboration & Innovation (CCI) team transforms the relationship between top-tier customers and our Product Development organization, and we are looking for a select individual to join the team as a Bioinformatics Software Engineer 2.  The team works externally with a small number of Illumina’s top customers to design…

Suggestions for Alternate Assembly Resources to Trinity 0 As far as I can tell, Galaxy no longer seems to support Trinity as an assembler – or at least, I have not been able to assemble any read data using Trinity for the past several months. Initially, I had had success…

Bioinformatics Analyst 40%-60%, Zurich, fixed-term 40%-60%, Zurich, fixed-term The ETH Zurich core facility NEXUS Personalized Health Technologies enables discovery and translational research for personalized health. We are recruiting a part-time Bioinformatics Analyst for the Clinical Bioinformatics Unit in Zurich to commence immediately or by mutual agreement. Job description The mission of…

Principal Bioinformatics Scientist – Cell and Gene Therapy Germany – Pharma The global Computational Biology and Digital Sciences (gCBDS) department is engaged in target discovery research and the application of innovative methods to resolve causative factors in disease progression. This is a great opportunity to lead computational projects in a…

Invitae is dedicated to bringing comprehensive genetic information into mainstream medicine to improve healthcare for billions of people. Our team is driven to make a difference for the patients we serve. We are leading the transformation of the genetics industry, by making genetic testing affordable and accessible for everyone to…

Bioinformatics / Pipeline Developer – Post DocCambridge This is a fantastic opportunity for a Post-Doc/PhD Graduate to join the R&D computational biology group as a Bioinformatics pipeline developer. This exciting company aim to transform the lives of cancer patients and their families through the development of precision treatments and ground-breaking…

At Memorial Sloan Kettering (MSK), we’re not only changing the way we treat cancer, but also the way the world thinks about it. By working together and pushing forward with innovation and discovery, we’re driving excellence and improving outcomes.  We’re treating cancer, one patient at a time. Join us and make a…

Job Summary We have an exciting opportunity in our US office for an experienced bioinformatician who is interested in working at the forefront of the gene editing (CRISPR knock-out, HDR, base editing) and gene modulation (CRISPRa, CRISPRi, RNAi) fields. As a Bioinformatics Scientist 2, you will have the opportunity to…

Look for more than answers.At Quest, we are on a continuous journey of discovery and development. It’s this attitude that has made us an industry leader and the #1 Diagnostic Lab in the US. For those joining us, we offer exciting and fast-moving career opportunities where you can affect change…

HaplotypeCaller Memory Optimization 0 When using HaplotypeCaller on GATK, is there a fixed amount of memory that works well for for the java -Xmx input, or does it scale with the size of the input bam? eg if I have a 50 GB file do I need to set -Xmx…

Job details Salary $125,001 – $135,000 a year job type full-time Full job description Job id: 2112092 Location: college park , md , us Date posted: 2021-08-12 Category: engineering and sciences Subcategory: systems engineer Schedule: full-time Shift: day job Travel: no Minimum clearance required: public trust Clearance level must be…

Gromacs 4.5.4 manual OntheStabilityofNegativelyChargedPlatelets inCalcium g_energy(1) [debian man page] Gromacs User Manual Version 4.6The defence of Königsberg had cost the lives of 42,000 German soldiers and 25,000 civilians. He yanked the seaman out and shouted at him to report straight to…

6500 – The number of associates in the Novartis Institutes for BioMedical Research (NIBR). This division is the innovation engine of Novartis, focusing on powerful new technologies that have the potential to help produce therapeutic breakthroughs for patients. We are seeking a bioinformatics scientist to coordinate the processing and…

The Bioinformatics and Whole Genome Sequencing (WGS) Software Development unit is part of Data Analytical Sciences within PHE’s National Infection Service Division. The unit is globally pre-eminent in the design, construction, validation and deployment of bioinformatics pipelines for the automated analysis of Next Generation Sequencing (NGS) whole Genome Sequence (WGS)…

1. Hackstein JH, Stumm CK. Methane production in terrestrial arthropods. Proc Natl Acad Sci USA. 1994;91:5441–5. CAS  PubMed  PubMed Central  Article  Google Scholar  2. Hackstein JHP, van Alen TA. Fecal methanogens and vertebrate evolution. Evolution. 1996;50:559–72. PubMed  Article  PubMed Central  Google Scholar  3. Borrel G, McCann A, Deane J, Neto…

Position Description: Every great life-changing discovery begins the same way-with new knowledge. It can change everything, from a single life to the future of entire communities. That’s why academic medicine, and the continuous pursuit of knowledge, is at the center of everything we do…

Job DescriptionBioinformatics ScientistFull Time Direct Hire Remote positionAre you looking for bioinformatics work? Are you interested in joining a team of talented bioinformaticians dedicated to understanding the genetics of cancer? In this role you will:* Function as a scientific thought leader within for all aspects of GWAS and population genetics….

Job Information Role Overview We are currently looking for a Bioinformatics Pipeline Developer to join a leading Biotech company based in the Cambridgeshire area. As the Bioinformatics Pipeline Developer you will be working on early cancer detection technology by supporting software developers and bioinformaticians Key Duties and Responsibilities 1. The…

JOB DESCRIPTION: The Human Genetics Department is currently offering an temporary employee position for students or working professionals in Bioinformatics/Computational Biology to join its Bioinformatics Team. The successful candidate will be actively engaged in mining the human genetics and genomics data to identify and prioritize targets. The successful candidate will be…

We are looking to hire an experienced bioinformatician who specializes in the analysis of human NGS data. The Research Scientist Bioinformatics will lead the development and expansion of our in-house NGS capabilities together with data managers and software developers, while also carrying out project-specific analyses. Exscientia GmbH is a company…

Northumbria University is a member of the COVID-19 Genomics UK Consortium (COG-UK).  COG-UK is a pioneer in the use of large-scale, rapid whole-genome sequencing of SARS-CoV-2, the virus causing the COVID-19 pandemic, to understand viral transmission and evolution, and to inform public health responses and vaccine development. We seeking to…

1. Lee, M.-R. et al. Mycobacterium abscessus complex infections in humans. Emerg. Infect. Dis. 21, 1638–1646 (2015). CAS  PubMed  PubMed Central  Google Scholar  2. Prince, D. S. et al. Infection with Mycobacterium avium complex in patients without predisposing conditions. N. Engl. J. Med. 321, 863–868 (1989). CAS  PubMed  Article  Google…

Genmab is focused on the creation and development of innovative and differentiated antibody products, with the aim of improving the lives of cancer patients. The Role The successful candidate will lead the global bioinformatics function and be responsible for many aspects of data including architecture, access, classification, standards, integration, pipelines…