Tag: hs37d5

Liftover vcf file from hs37d5 assembly to b37 assembly

Liftover vcf file from hs37d5 assembly to b37 assembly 0 Hello, I have a vcf file which consists of mutations that was generated using the GATK variant calling workflow. For this the hs37d5 assembly was used. The problem is, that all GAKT reference resources use the b37 assembly, and if…

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What is the difference between GRCh37 and hs37? And hg19?

This is what I have found so far. Please correct me if I am wrong. GRCh37 w/o patches includes the primary assembly (22 autosomal, X. Y, and non-chromosomal supecontigs) and alternate scaffolds, but not a reference mitogenome. Non-chromosomal supercontigs are the unlocalized and unplaced scaffolds. The rCRS reference mitogenome in…

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