Tag: IEEE

Introduction Next-generation sequencing (NGS) enables scientists to decipher the genome for a deeper understanding of biology. Proven Illumina sequencing by synthesis (SBS) chemistry combined with award-winning DRAGEN secondary analysis delivers whole-genome sequencing (WGS) data with outstanding accuracy.1,2 DRAGEN Multigenome (graph) further improves mapping accuracy in challenging regions by ~50%.1 Still,…

Vaswani, A. et al. Attention is all you need. Preprint at doi.org/10.48550/arXiv.1706.03762 (2017). Devlin, J., Chang, M. W., Lee, K. & Toutanova, K. BERT: pre-training of deep bidirectional transformers for language understanding. In Proc. 2019 Conference North American Chapter of the Association for Computational Linguistics: Human Language Technologies Vol. 1…

Revsbech, N. P. et al. Determination of ultra-low oxygen concentrations in oxygen minimum zones by the STOX sensor. Limnol. Oceanogr.: Methods. 7, 371-381. (2009). Wright, J. J., Konwar, K. M. & Hallam, S. J. Microbial ecology of expanding oxygen minimum zones. Nat. Rev. Microbiol. 10, 381–394 (2012). Article  CAS  PubMed …

package manager since it installs all dependencies. (defualt: 5), num_electrodes (int) The number of electrodes. I plugged the DGCNN model into my semantic segmentation framework in which I use other models like PointNet or PointNet++ without problems. This commit does not belong to any branch on this repository, and may…

@article{Ji2022AutoDockKA, title={AutoDock Koto: A Gradient Boosting Differential Evolution for Molecular Docking}, author={Junkai Ji and Jin Zhou and Zhangfan Yang and Qiuzhen Lin and Carlos A. Coello Coello}, journal={IEEE Transactions on Evolutionary Computation}, year={2022} } Molecular docking plays a vital role in modern drug discovery, by supporting predictions of the binding…

Abadi M, Agarwal A, Barham P, et al. 2016 TensorFlow: large-scale machine learning on heterogeneous distributedsystems. Cornell University Library website. arxiv.org/abs/1603.04467. Published 2016. Accessed October 2016. Afshar P, Mohammadi A, Plataniotis KN. (2018) Brain tumor type classification via capsule networks, in Proc. 25th IEEE Int Conf Image Process. pp. 3129–3133….

Ahmad L, Eshlaghy A, Poorebrahimi A, Ebrahimi M, Razavi A (2013) Using three machine learning techniques for predicting breast cancer recurrence. J Health Med Inform 4(124):3 Google Scholar  Bochare A, Gangopadhyay A, Yesha Y, Joshi A, Yesha Y, Brady M, Grasso MA, Rishe N (2014) Integrating domain knowledge in supervised…

Anderson MJ (2001) A new method for non‐parametric multivariate analysis of variance. Austral Ecol 26(1):32–46 Google Scholar  Anderson MJ (2004) PERMDISP: a FORTRAN computer program for permutational analysis of multivariate dispersions (for any two-factor ANOVA design) using permutation tests. Department of Statistics, University of Auckland, New Zealand, 24. Aykanat T,…

Abdel-Basset M, Hawash H, Elhoseny M, Chakrabortty RK, Ryan M (2020) DeepH-DTA: deep learning for predicting drug-target interactions: a case study of COVID-19 drug repurposing. IEEE Access 8:170433–170451 Article  Google Scholar  Abdulrahman SA, Salem ABM (2020) A efficient deep belief network for Detection of Corona Virus Disease COVID-19. Fusion Pract,…

Dua, R., D. G. Beetner, W. V. Stoecker, and D. C. Wunsch. Detection of basal cell carcinoma using electrical impedance and neural networks. IEEE Trans. Biomed. Eng. 51:66–71, 2004. Article  PubMed  Google Scholar  Doran, C. M., et al. Estimating the economic costs of skin cancer in New South Wales, Australia….

Brown, T. B. et al. In Adv. Neural Inf. Process. Syst. 33 (eds Larochelle, H. et al.) 1877–1901 (Curran Associates, 2020). Open AI. Preprint at arXiv doi.org/10.48550/arXiv.2303.08774 (2023). Nguyen, N. & Nadi, S. In Proc. 19th Intl Conf. Mining Software Repositories 1–5 (Association for Computing Machinery, 2022); doi.org/10.1145/3524842.3528470 Nan, Y….

Alkooranee JT, Liu S, Aledan TR, Yin Y, Li M (2015) First report of powdery mildew caused by erysiphe cruciferarum on brassica napus in China. Plant Dis 99(11):1651 CrossRef  Google Scholar  Al-Lami HFD, You MP, Barbetti MJ (2019a) Incidence, pathogenicity and diversity of Alternaria spp. associated with alternaria leaf spot…

Bertacchini, C. et al. Design of an irreversible electroporation system for clinical use. Technol. Cancer Res. Treat. 6, 313–320 (2007). Article  PubMed  Google Scholar  Zhang, Y. et al. MR imaging to assess immediate response to irreversible electroporation for targeted ablation of liver tissues: Preclinical feasibility studies in a rodent model….

ncs 2.3.0 Good morning,for a few days, I can no longer compile a firmware that I use regularly. I don’t understand what could have happened. I’ll post the compilation with the errors if anyone has any ideas about it.Thank you CMAKE/BUILD [cmake] CMake Error at /opt/nordic/ncs/v2.3.0/zephyr/cmake/modules/extensions.cmake:2520 (message): [cmake] BOARD is not…

FAO. Faostat: FAO Statistical Databases. (Food & Agriculture Organization of the United Nations (FAO), 2000). The war in Ukraine is exposing gaps in the world’s food-systems research. Nature 604, 217–218 (2022). Chapman, M. A., He, Y. & Zhou, M. Beyond a reference genome: pangenomes and population genomics of underutilized and…

Tesla’s AI architecture is dependent on Dojo, the neural network training supercomputer that Musk says can process vast amounts of camera imaging data four times faster than other computing systems. Takedown request View complete answer on techcrunch.com What is the Tesla AI called? History. On April 7, 2022, a display…

McGown LB, Joseph MJ, Pitner JB et al (1995) The nucleic acid ligand. A new tool for molecular recognition. Anal Chem 67:663A?8A. doi.org/10.1021/ac00117a002 Article  CAS  PubMed  Google Scholar  Topkaya SN, Cetin AE (2019) Determination of electrochemical interaction between 2-(1H-benzimidazol-2-yl) phenol and DNA sequences. Electroanalysis 31:1571?1578. doi.org/10.1002/elan.201900199 Article  CAS  Google Scholar …

Giovannoni, J. J. Genetic regulation of fruit development and ripening. Plant Cell 16, S170–S180 (2004). CAS  PubMed  PubMed Central  Google Scholar  Tieman, D. et al. A chemical genetic roadmap to improved tomato flavor. Science 355, 391–394 (2017). CAS  PubMed  Google Scholar  Peralta, I. E., Spooner, D. M. & Knapp, S….

Pan, I. et al. Am. J. Roentgenol. 213, 568–574 (2019). Article  Google Scholar  Larrazabal, A. J. et al. Proc. Natl Acad. Sci. USA 117, 12592–12594 (2020). Article  CAS  PubMed  PubMed Central  Google Scholar  Seyyed-Kalantari, L. et al. Nat. Med. 27, 2176–2182 (2021). Article  CAS  PubMed  PubMed Central  Google Scholar  Howard,…

Fine-tuning image models to tackle domain shift and class imbalance with PyTorch and torchaudio in audio data Classifying bird calls in soundscapes with Machine Learning (Image drawn by the author) Welcome to another edition of “The Kaggle Blueprints”, where we will analyze Kaggle competitions’ winning solutions for lessons we can…

IEEE Spectrum reports on Codon, a Python compiler specifically developed to, as they put it, “turbocharge Python’s Notoriously slow compiler.” “We do type checking during the compilation process, which lets us avoid all of that expensive type manipulation at runtime,” says Ariya Shajii, an MIT CSAIL graduate student and lead…

1 Introduction Modern plant breeding programs are collecting an increasing amount of data of various types from several sources such as multiple secondary phenotypic traits (other than the main trait of interest), high-throughput phenotyping data, weather data, hyper-spectral images, and different types of -omics data such as genomics, transcriptomics, proteomics,…

Naik RR, Singamaneni S. Introduction: bioinspired and biomimetic materials. Chem Rev. 2017;117(20):12581–3. Article  CAS  PubMed  Google Scholar  Huang G, Li F, Zhao X, Ma Y, Li Y, Lin M, et al. Functional and biomimetic materials for engineering of the three-dimensional cell microenvironment. Chem Rev. 2017;117(20):12764–850. Article  CAS  PubMed  PubMed Central …

Feurer, M. & Hutter, F. Hyperparameter optimization. In Automated Machine Learning, The Springer Series on Challenges in Machine Learning 3–33. doi.org/10.1007/978-3-030-05318-5 (2018). Belete, D. M. & Huchaiah, M. D. Grid search in hyperparameter optimization of machine learning models for prediction of HIV/AIDS test results. Int. J. Comput. Appl. 44, 875–886….

Haley Jeppson (Department of Statistics) , Heike Hofmann (Department of Statistics) 2023-03-09 Graphical methods for categorical variables are not as thoroughly developed when compared with what is available for numeric variables. Categorical variables in scientific publications often appear in the form of bar charts (first published in the Commercial and…

Inagaki, F., Takai, K., Kobayashi, H., Nealson, K. H. & Horikoshi, K. Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing e-proteobacterium isolated from hydrothermal sediments in the Mid-Okinawa Trough. Int. J. Syst. Evol. Microbiol. 53, 1801–1805 (2003). Article  CAS  PubMed  Google Scholar  Timmer-Ten Hoor, A. A new type of…

By Amanda Randles, PhD Exciting advances in establishing metrics to quantify underlying structure in vascular red blood cell distributions1 will enable us to track individual cancer cells as they travel through crowded blood vessels, randomly careening with red blood cells on their journey through a patient’s body. Why quantify cellular…

What Is Isolation Forest Kaggle? Isolation Forest Kaggle is an unsupervised machine learning technique used for identifying anomalies in data sets. It’s based on the idea of isolating a subset of points from the main data set and predicting those points as anomalies if they stray too far away from…

La electroporación es un fenómeno donde la permeabilidad de la membrana celular se ve aumentada cuando es expuesta a pulsos de campo eléctrico de alta intensidad [1]. Debido al incremento de permeabilidad, iones y macromoléculas pueden cruzar la membrana durante la electroporación. En función de la intensidad del campo, el…

Claude, J., Paradis, E., Tong, H. & Auffray, J. C. A geometric morphometric assessment of the effects of environment and cladogenesis on the evolution of the turtle shell. Biol. J. Linn. Soc. 79, 485–501 (2003). Article  Google Scholar  Klingenberg, C. P., Duttke, S., Whelan, S. & Kim, M. Developmental plasticity,…

IEEE Computer Society Team Due to the rapid emergence of biological data acquisition technologies, the explosion of biological data sets has created a need for bioinformatics programs and applications. Bioinformatics is a discipline that is an interwoven network of biology, computer science, and information. The applications and programs in bioinformatics…

Discovering eQTL Regulatory Patterns Through eQTLMotif | IEEE Conference Publication | IEEE Xplore Skip to Main Content …

Yu, Z., Loisel, J., Brosseau, D. P., Beilman, D. W. & Hunt, S. J. Global peatland dynamics since the Last Glacial Maximum. Geophys. Res. Lett. 37, L13402 (2010). van Breemen, N. How Sphagnum bogs down other plants. Trends Ecol. Evol. 10, 270–275 (1995). Article  Google Scholar  Johnson, M. G. et…

Orcutt B, D’Angelo T, Jungbluth SP, Huber JA, Sylvan JB. Microbial life in oceanic crust. OSF Preprints, 2020; doi.org/10.31219/osf.io/2wxe6. Koonin EV. On the origin of cells and viruses: primordial virus world scenario. Ann NY Acad Sci. 2009;1178:47–64. Nigro OD, Jungbluth SP, Lin HT, Hsieh CC, Miranda JA, Schvarcz CR, et…

Faraone, S. V. et al. Attention-deficit/hyperactivity disorder. Nat. Rev. Dis. Prim. 1, 15020 (2015). Article  Google Scholar  Franke, B. et al. The genetics of attention deficit/hyperactivity disorder in adults, a review. Mol. Psychiatry 17, 960–987 (2012). Article  CAS  Google Scholar  Dalsgaard, S., Leckman, J. F., Mortensen, P. B., Nielsen, H….

Jan 24 2023 DNA can signal the presence of or predisposition to a slew of diseases, including cancer. The ability to flag down these clues, known as biomarkers, allows medical professionals to make critical early diagnoses and provide personalized treatments. The typical methods of screening can be laborious, expensive or…

Please use this url to cite or link to this publication: hdl.handle.net/1854/LU-01GQER9G858BMDSWYYS1HSXJMR MLA 1. Vromman M, Vandesompele J, Volders P-J. Large-scale benchmarking of circular RNA detection tools. In RNA society; 2022. APA [1] M. Vromman, J. Vandesompele, and P.-J. Volders, “Large-scale benchmarking of circular RNA detection tools,” presented at the…

Boore, J. L. Animal mitochondrial genomes. Nucleic Acids Res. 27, 1767–1780 (1999). Article  CAS  Google Scholar  Calvo, S. E., Clauser, K. R. & Mootha, V. K. MitoCarta2. 0: an updated inventory of mammalian mitochondrial proteins. Nucleic Acids Res. 44, D1251–D1257 (2016). Article  CAS  Google Scholar  Andrews, R. M. et al….

Please use this url to cite or link to this publication: hdl.handle.net/1854/LU-01GP3AHHZ8VR3BTBCPA6FEXGM0 MLA De Almeida Silva, Fabricio, Tao Zhao, Kristian K Ullrich, M Eric Schranz, and Yves Van de Peer. 2023. “Syntenet: An R/Bioconductor Package for the Inference and Analysis of Synteny Networks.” Ed by. Pier Luigi Martelli. Bioinformatics. doi:10.1093/bioinformatics/btac806….

Please use this url to cite or link to this publication: hdl.handle.net/1854/LU-8771189 MLA Rubben, Kaat, et al. “Cas9 Targeted Nanopore Sequencing with Enhanced Variant Calling Improves CYP2D6-CYP2D7 Hybrid Allele Genotyping.” PLOS Genetics, edited by Guanzheng Luo, 2022, doi:10.1371/journal.pgen.1010176. APA Rubben, K., Tilleman, L., Deserranno, K., Tytgat, O., Deforce, D., &…

Bibliographic Details Author Ghadami, Mohammad Shagoshtasbi, Hooman Mahjoob, Mohammad Jahromi Lee, Yi-Kuen Issue Date 2013 Source The 8th Annual IEEE International Conference on Nano/Micro Engineered and Molecular Systems (NEMS 2013), Institute of Electrical and Electronics Engineers (IEEE), 2013, p. 895-898 Abstract This paper describes a comparative study of two feedback…

Heffernan, A.L., Hare, D.J.: Tracing environmental exposure from neurodevelopment to neurodegeneration. Trends Neurosci. 41, 496–501 (2018) CAS  PubMed  Article  Google Scholar  Pacitti, D., Privolizzi, R., Bax, B.E.: Organs to cells and cells to organoids: the evolution of in vitro central nervous system modelling. Front Cell Neurosci. 13, 129 (2019) CAS …

Bibliographic Details Author Zhao, Xu Liu, Haixiang Wang, Xiaoyi Zhao, Cong Izhar Tang, Benzhong Lee, Yi-kuen Issue Date 2020 Source 15th IEEE International Conference on Nano/Micro Engineered and Molecular System, NEMS 2020 / IEEE. New York, NY, USA : IEEE, 2020, p. 230-233, Article no.: 9265581 Abstract Electroporation (EP) is…

Learn How to Configure the QualityLogic 2030.5 Ad Hoc Client Tester California Rule 21 Phase 3 has eight distinct advanced DER functions for DER devices to be certified against. Out of these required functions, there are two Phase 3 functions that do not currently have a national testing standard to…

Author Correction: Using energy time”“frequency of Hilbert Huang transform to analyze the performance of the variable valve timing engine Correction to: Scientific Reports doi.org/10.1038/s41598-022-06404-3, published online 11 February 2022. The original version of this Article contained errors in the Reference list, where references 1,2,4,5,12,13,14,15,18,21,22,23,34,36,37,39,40,41,42,43,44 and 45 were incorrectly given as….

Pereira, S. L. Mitochondrial genome organization and vertebrate phylogenetics. Genet. Mol. Biol. 23, 745–752 (2000). CAS  Google Scholar  Boore, J. L. Animal mitochondrial genomes. Nucl. Acids Res. 27, 1767–1780 (1999). CAS  PubMed  PubMed Central  Google Scholar  Formenti, G. et al. Complete vertebrate mitogenomes reveal widespread gene duplications and repeats. BioRxiv…

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Karesh, W. B. et al. Ecology of zoonoses: natural and unnatural histories. Lancet 380, 1936–1945 (2012). PubMed  PubMed Central  Google Scholar  Wolfe, N. D., Dunavan, C. P. & Diamond, J. Origins of major human infectious diseases. Nature 447, 279–283 (2007). CAS  PubMed  PubMed Central  Google Scholar  Allen, T. et al….

A Tissue-aware Gene Selection Approach for Analyzing Multi-tissue Gene Expression Data | IEEE Conference Publication | IEEE Xplore Skip to Main Content…

Please use this url to cite or link to this publication: hdl.handle.net/1854/LU-8743723 MLA Vromman, Marieke, et al. “CIRCprimerXL: Convenient and High-Throughput PCR Primer Design for Circular RNA Quantification.” Frontiers in Bioinformatics, 2022, doi:10.3389/fbinf.2022.834655. APA Vromman, M., Anckaert, J., Vandesompele, J., & Volders, P.-J. (2022). CIRCprimerXL: Convenient and High-Throughput PCR Primer…

Chaisson, M. J. et al. Multi-platform discovery of haplotype-resolved structural variation in human genomes. Nat. Commun. 10, 1–16 (2019). Article  Google Scholar  Conesa, A. et al. A survey of best practices for RNA-seq data analysis. Genome Biol. 17, 1–19 (2016). Article  Google Scholar  Beyter, D. et al. Long-read sequencing of…

Workflow Platforms for Systems Genetics eQTL Platforms eQTL Viewer Mouse Genome Informatics: Phenotypes, Alleles & Disease Models PhenoGen Informatics (CO U) eXtensible Genotype And Phenotype platform (XGAP) MOLGENIS & MetaNetwork, Swertz & Jansen, U Groningen Weighted Gene Co-expression Network Analysis (WGCNA), Horvath, UCLA iPlant Sage Bionetworks Repository: Synapse GenomeSpace Institute…

I have a project using NCS v1.8.0 where I enabled openthread. For some reason, when trying to build `mbedtls/library/ecjpake.c`, the make command uses `-DMBEDTLS_CONFIG_FILE=”nrf-config.h”` and fails on: > nrf-config.h: No such file or directory I’m not sure why it tries to use this file because `MBEDTLS_CFG_FILE` is set to `config-tls-generic.h`….

Graph Convolution Networks Using Message Passing and Multi-Source Similarity Features for Predicting circRNA-Disease Association | IEEE Conference Publication | IEEE Xplore Skip…

Computer Vision Researcher / Research Scientist – 12 month contract This is a unique opportunity to snap up very quickly. Our client is a leading technology firm looking to hire a recent graduate / post doc graduate. An ideal role for a newly qualified individual looking to gain experience within…

Most of us have credit cards, but there are still some people that do not. Skin lesion detection and classification is always observed as a difficult problem to solve. Got it. We then applied dropout again to further prevent overfitting. This problem is important as it will potentially save a…

Introduction Coronary artery disease (CAD) is a complex pathology associated with behavioral and environmental factors.1–3 CAD shows high prevalence and is associated with a high fatality rate among cardiovascular diseases. The main manifestations of CAD are stable or unstable angina pectoris and identifiable or unrecognized myocardial infarction.4 The main risk…

doi: 10.1088/2057-1976/ac240b. Online ahead of print. Affiliations Expand Affiliations 1 Department of Applied Sciences (Biomedical Engineering), Indian Institute of Information Technology Allahabad, Indian Institute Of Information Technology Road, Allahabad, 211012, INDIA. 2 Department of Applied Sciences (Biomedical Engineering), Indian Institute of Information Technology Allahabad, Indian Institute Of Information Technology Road,…