Tag: IEEE

Apple open-source framework for AI development utilizes own chips

Apple (NASDAQ: AAPL) has announced the launch of MLX, an open-source framework for artificial intelligence (AI) development, joining the trend of Big Tech firms with model libraries for machine learning. Apple’s MLX allows developers to build large language models (LLMs) compatible with Apple Silicon and MLX Data, its deep learning model library….

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Genetic architecture of cardiac dynamic flow volumes

Virani, S. S. et al. Heart disease and stroke statistics-2021 update: a report from the American Heart Association. Circulation 143, e254–e743 (2021). Article  PubMed  Google Scholar  Nauffal, V. et al. Genetics of myocardial interstitial fibrosis in the human heart and association with disease. Nat. Genet. 55, 777–786 (2023). Article  CAS …

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A CNN based m5c RNA methylation predictor

Hammad, M. et al. A novel end-to-end deep learning approach for cancer detection based on microscopic medical images. Biocybern. Biomed. Eng. 42(3), 737–748 (2022). Article  Google Scholar  Hammad, M. et al. Efficient multimodal deep-learning-based covid-19 diagnostic system for noisy and corrupted images. J. King Saud Univ.-Sci. 34(3), 101898 (2022). Article …

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ncs v2.5.0 linker error when setting CONFIG_BOOTLOADER_MCUBOOT – Nordic Q&A – Nordic DevZone

Hello, I currently have an app using nRF Connect SDK v2.5.0. To enable FOTA I set CONFIG_NCS_SAMPLE_MCUMGR_BT_OTA_DFU and CONFIG_BOOTLOADER_MCUBOOT in my prj.conf (following the documentation instructions). After this building the app fails during linking for 3 different undefined references: [275/280] Linking C executable zephyr/zephyr_pre0.elf FAILED: zephyr/zephyr_pre0.elf zephyr/zephyr_pre0.map : && ccache /home/q/app/zephyr_workspace/toolchains/7795df4459/opt/zephyr-sdk/arm-zephyr-eabi/bin/arm-zephyr-eabi-gcc…

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Deep learning-enabled breast cancer endocrine response determination from H&E staining based on ESR1 signaling activity

Burstein, H. J. Systemic therapy for estrogen receptor-positive, HER2-negative breast cancer. N. Engl. J. Med. 383, 2557–2570. doi.org/10.1056/NEJMra1307118 (2020). Article  CAS  PubMed  Google Scholar  Jeselsohn, R. M. The evolving use of SERDs in estrogen receptor-positive, HER2-negative metastatic breast cancer. Clin. Adv. Hematol. Oncol. 19, 428–431 (2021). PubMed  Google Scholar  McAndrew,…

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Revisiting the use of structural similarity index in Hi-C

Galan, S. et al. CHESS enables quantitative comparison of chromatin contact data and automatic feature extraction. Nat. Genet. 52, 1247–1255 (2020). Article  CAS  PubMed  PubMed Central  Google Scholar  Díaz, N. et al. Chromatin conformation analysis of primary patient tissue using a low input Hi-C method. Nat. Commun. 9, 4938 (2018)….

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nrfConnect 2.5.0: mbedTLS fails to compile (calloc()) – Nordic Q&A – Nordic DevZone

Hi there: we’ve just updated from nrfConnect 2.3.0 to nrfConnect 2.5.0 and mbedTLS (which seems to have been modified in nrfConnect 2.5.0) now fails to link (in platform.c) because it needs and is unable to find calloc(): /home/arm_embedded_gcc-10-2020-q4-major/bin/ld.bfd: modules/mbedtls/libmbedTLSBase.a(platform.c.obj):/home/nrfconnectsdk-v2.5.0/modules/crypto/mbedtls/library/platform.c:56: undefined reference to `calloc’ As you can see, we are just compiling…

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Transformer-based tool recommendation system in Galaxy | BMC Bioinformatics

Kumar A, Rasche H, Grüning B, Backofen R. Tool recommender system in Galaxy using deep learning. GigaScience. 2021. doi.org/10.1093/gigascience/giaa152. Article  PubMed  PubMed Central  Google Scholar  The galaxy community: the galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update. Nucleic Acids Res 50(W1):W345-W35104 2022. (2022). doi.org/10.1093/nar/gkac247 Gil Y, Ratnakar…

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Implementing Soft Nearest Neighbor Loss in PyTorch | by Abien Fred Agarap | Nov, 2023

Representation learning is the task of learning the most salient features in a given dataset by a deep neural network. It is usually an implicit task done in a supervised learning paradigm, and it is a crucial factor in the success of deep learning (Krizhevsky et al., 2012; He et…

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In silico study about the influence of electroporation parameters on the cellular internalization, spatial uniformity, and cytotoxic effects of chemotherapeutic drugs using the Method of Fundamental Solutions

Batista Napotnik T, Miklavčič D (2018) In vitro electroporation detection methods – an overview. Bioelectrochemistry 120:166–182. doi.org/10.1016/j.bioelechem.2017.12.005 Article  CAS  PubMed  Google Scholar  Kotnik T, Rems L, Tarek M, Miklavčič D (2019) Membrane electroporation and electropermeabilization: mechanisms and models. Annu Rev Biophys 48(1):63–91. doi.org/10.1146/annurev-biophys-052118-115451 Article  CAS  PubMed  Google Scholar  Rems L,…

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A coupled model of electroporation and electrodeformation considering dynamic Young’s modulus | Applied Physics Letters

Cells exposed to a pulsed electric field undergo electrodeformation (ED) and electroporation (EP) under the action of electric field stress, and this paper proposes a coupled model of EP and ED that considers the change in Young’s modulus. The model considers the cytoplasmic membrane as a porous viscoelastic material and…

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Predicting circRNA-disease association using heterogeneous network and meta-path

[1] H. L. Sanger, G. Klotz, D. Riesner, H. J. Gross, A. K. Kleinschmidt, Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures, Proc. Natl. Acad. Sci. USA, 73 (1976), 3852–3856. doi.org/10.1073/pnas.73.11.3852 doi: 10.1073/pnas.73.11.3852 …

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Award-Winning Tools Make Super Computers Run 40% Faster

In the fall of 2019, Rohan Basu Roy was sitting in the Goodwill Computing Laboratory on Northeastern’s Boston campus.  He had just started pursuing his doctorate in computer engineering and was working on high-performance computing (HPC) systems and applications. These systems sequence, analyze and extract large amount of data in…

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r – How do I assign one color to a specific value in ggplot2 function scale_fill_gradient2?

Another option that does not require the addition of a new package. gg <- ggplot(df, aes(x, y, fill = z)) + geom_tile() + scale_fill_gradient2( low = ‘#0017FF’, mid = “white”, high=”#FF2D00″, midpoint = 0, na.value = “grey50” ) To the original plot, overlay another geom_tile with just the cells you…

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Genome interpretation in a federated learning context allows the multi-center exome-based risk prediction of Crohn’s disease patients

Goodwin, S., McPherson, J. D. & Richard McCombie, W. Coming of age: Ten years of next-generation sequencing technologies. Nat. Rev. Genet. 17(6), 333–351 (2016). Article  CAS  PubMed  PubMed Central  Google Scholar  Van Dijk, E. L., Auger, H., Jaszczyszyn, Y. & Thermes, C. Ten years of next-generation sequencing technology. Trends Genet….

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Rapid in situ RNA imaging based on Cas12a thrusting strand displacement reaction | Nucleic Acids Research

Abstract RNA In situ imaging through DNA self-assembly is advantaged in illustrating its structures and functions with high-resolution, while the limited reaction efficiency and time-consuming operation hinder its clinical application. Here, we first proposed a new strand displacement reaction (SDR) model (Cas12a thrusting SDR, CtSDR), in which Cas12a could overcome…

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Determination of Genetic Structure of Trout Populations Using mtDNA-RFLP Analysis Method in Turkey

Bibtex @ { yunusae235540, journal = {Aquaculture Studies}, issn = {2618-6381}, address = {}, publisher = {Su Ürünleri Merkez Araştırma Enstitüsü}, year = {2006}, volume = {2006}, number = {4}, pages = {0 – 0}, doi = {10.17693/yunus.47858}, title = {Determination of Genetic Structure of Trout Populations Using mtDNA-RFLP Analysis…

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Feature Extraction And Classification From Planetary Science Datasets Enabled By Machine Learning

Examples of chaos feature types under our definition, adapted from that of Spaun et al. (1998). Image credit: NASA/JPL In this paper we present two examples of recent investigations that we have undertaken, applying Machine Learning (ML) neural networks (NN) to image datasets from outer planet missions to achieve feature…

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Exploratory Data Analysis and Prediction of Human Genetic Disorder and Species Using DNA Sequencing

Sanders, S.J.: First glimpses of the neurobiology of autism spectrum disorder. Curr. Opin. Genet. Dev. 33, 80–92 (2015) CrossRef  Google Scholar  Schizophrenia working group of the psychiatric genomics consortium: biological insights from 108 schizophrenia-associated genetic loci. Nature 511, 421–427 (2014) Google Scholar  Jamie, P., et al.: Global, regional, and national…

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Meta’s AI analysis head needs open supply licensing to vary

In July, Meta’s Elementary AI Analysis (FAIR) heart launched its giant language mannequin Llama 2 comparatively overtly and totally free, a stark distinction to its largest rivals. However on the planet of open-source software program, some nonetheless see the corporate’s openness with an asterisk. Whereas Meta’s license makes Llama 2…

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Meta’s AI research head wants open source licensing to change

In July, Meta’s Fundamental AI Research (FAIR) center released its large language model Llama 2 relatively openly and for free, a stark contrast to its biggest competitors. But in the world of open-source software, some still see the company’s openness with an asterisk. While Meta’s license makes Llama 2 free…

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Transgenic expression in zebrafish embryos with an intact chorion by electroporation and microinjection

Biotechnol Rep (Amst). 2023 Dec; 40: e00814. Nusrat Tazin aDepartment of Electrical and Computer Engineering, University of Utah, Salt Lake City, UT, USA Christopher Jordon Lambert bDepartment of Mechanical Engineering, University of Utah, Salt Lake City, Utah, USA Raheel Samuel bDepartment of Mechanical Engineering, University of Utah, Salt Lake City,…

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Diverse electron carriers drive syntrophic interactions in an enriched anaerobic acetate-oxidizing consortium

Nobu MK, Narihiro T, Mei R, Kamagata Y, Lee PKH, Lee P-H, et al. Catabolism and interactions of uncultured organisms shaped by eco-thermodynamics in methanogenic bioprocesses. Microbiome. 2020;8:111. Article  CAS  PubMed  PubMed Central  Google Scholar  Conrad R. Contribution of hydrogen to methane production and control of hydrogen concentrations in methanogenic…

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The exploration of dominant spoilage bacteria in blue mussels (Mytilus edulis) stored under different modified atmospheres by MALDI-TOF MS in combination with 16S rRNA sequencing

Please use this url to cite or link to this publication: hdl.handle.net/1854/LU-01HDJXKHJ0FDS3JH02PM7TSDP7 MLA Ratnawati, Susana Endah, et al. “The Exploration of Dominant Spoilage Bacteria in Blue Mussels (Mytilus Edulis) Stored under Different Modified Atmospheres by MALDI-TOF MS in Combination with 16S RRNA Sequencing.” Food Microbiology, Elsevier BV, 2023, p. 104407,…

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Voice-based analysis may help differentiate FA from other diseases

Analyzing patients’ voices using machine learning may help to identify Friedreich’s ataxia (FA) and differentiate it from other neurological disorders, a new study shows. “The implications of this approach are substantial and provide new opportunities for healthcare, particularly for remote and rural areas where access to health providers might be…

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Changed from an Icarus to a Icarus_SoM gaves error compiling – Nordic Q&A – Nordic DevZone

Hi, I’m trying to use the code of a board from Actinius in another board from Actinius but a SoM. When compiling I’ve got one error that I can’t understand. This is probably because of the configurations. [133/311] Building C object CMakeFiles/app.dir/src/modules/gpios/gpios.c.objFAILED: CMakeFiles/app.dir/src/modules/gpios/gpios.c.obj C:\ncs\toolchains\v2.3.0\opt\zephyr-sdk\arm-zephyr-eabi\bin\arm-zephyr-eabi-gcc.exe -DKERNEL -DLFS_CONFIG=zephyr_lfs_config.h -DMBEDTLS_CONFIG_FILE=\”nrf-config.h\” -DMBEDTLS_USER_CONFIG_FILE=\”nrf-config-user.h\” -DNRF9160_XXAA -DNRF_SKIP_FICR_NS_COPY_TO_RAM…

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Common loss of far-red light photoacclimation in cyanobacteria from hot and cold deserts: a case study in the Chroococcidiopsidales

Quesada A, Vincent WF. Strategies of adaptation by antarctic cyanobacteria to ultraviolet radiation. Eur J Phycol. 1997;32:335–42. Article  Google Scholar  Genuário DB, Corrêa DM, Komárek J, Fiore MF. Characterization of freshwater benthic biofilm-forming Hydrocoryne (Cyanobacteria) isolates from Antarctica. J Phycol. 2013;49:1142–53. Article  PubMed  Google Scholar  Makhalanyane TP, Valverde A, Gunnigle…

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Real-time Audio-visual Speech Recognition | PyTorch

by Team PyTorch Audio-Visual Speech Recognition (AV-ASR, or AVSR) is the task of transcribing text from audio and visual streams, which has recently attracted a lot of research attention due to its robustness to noise. The vast majority of work to date has focused on developing AV-ASR models for non-streaming…

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DETECTION OF EXON AND INTRON REGIONS IN DNA SEQUENCES BY THE PROPOSED HASHING FUNCTION

Bibtex @araştırma makalesi { jsr-a1281084, journal = {Journal of Scientific Reports-A}, eissn = {2687-6167}, address = {Kütahya Dumlupınar Üniversitesi Lisansüstü Eğitim Enstitüsü Tavşanlı Yolu 10. km}, publisher = {Kütahya Dumlupınar Üniversitesi}, year = {2023}, number = {054}, pages = {26 – 41}, doi = {10.59313/jsr-a.1281084}, title = {DETECTION OF EXON…

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weipengzhang on kaggle.com – Account

Rank Score Rating Δ Date Event 3 0.60 · · Jan. 10, 2024 Linking Writing Processes to Writing Quality [education, nlp, primary and secondary schools] 2450 0.80 · · Aug. 25, 2022 American Express – Default Prediction [tabular data, binary classification, finance] 45 0.03 · · May 10, 2022 H&M…

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Repeated low doses of psilocybin increase resilience to stress, lower compulsive actions, and strengthen cortical connections to the paraventricular thalamic nucleus in rats

Agin-Liebes GI, Malone T, Yalch MM, Mennenga SE, Ponté KL, Guss J, et al. Long-term follow-up of psilocybin-assisted psychotherapy for psychiatric and existential distress in patients with life-threatening cancer. J Psychopharmacol. 2020;34:155–66. PubMed  Google Scholar  Johnson MW, Garcia-Romeu A, Griffiths RR. Long-term follow-up of psilocybin-facilitated smoking cessation. Am J Drug…

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Molecular classification of hormone receptor-positive HER2-negative breast cancer

Siegel, R. L., Miller, K. D. & Jemal, A. Cancer statistics, 2020. CA Cancer J. Clin. 70, 7–30 (2020). Article  PubMed  Google Scholar  Huppert, L. A., Gumusay, O., Idossa, D. & Rugo, H. S. Systemic therapy for hormone receptor-positive/human epidermal growth factor receptor 2-negative early stage and metastatic breast cancer….

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Transposon-encoded nucleases use guide RNAs to promote their selfish spread

Siguier, P., Gourbeyre, E., Varani, A., Ton-Hoang, B. & Chandler, M. Everyman’s guide to bacterial insertion sequences. Microbiol. Spectr. 3, MDNA3-0030-2014 (2015). Article  PubMed  Google Scholar  He, S. et al. The IS200/IS605 family and “peel and paste” single-strand transposition mechanism. Microbiol. Spectr. 3, MDNA3-0039-2014 (2015). Article  ADS  Google Scholar  Kapitonov,…

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Single-nucleus transcriptomes reveal spatiotemporal symbiotic perception and early response in Medicago

Nutman, P. S. Centenary lecture. Phil. Trans. R. Soc. B 317, 69–106 (1987). Google Scholar  Kelly, S., Radutoiu, S. & Stougaard, J. Legume LysM receptors mediate symbiotic and pathogenic signalling. Curr. Opin. Plant Biol. 39, 152–158 (2017). Article  CAS  PubMed  Google Scholar  Roy, S. et al. Celebrating 20 years of…

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Precision RNA base editing with engineered and endogenous effectors

Gray, M. W. Evolutionary origin of RNA editing. Biochemistry 51, 5235–5242 (2012). Article  CAS  PubMed  Google Scholar  Covello, P. & Gray, M. On the evolution of RNA editing. Trends Genet. 9, 265–268 (1993). Article  CAS  PubMed  Google Scholar  Yablonovitch, A. L., Deng, P., Jacobson, D. & Li, J. B. The…

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Whole exome sequencing and transcriptome analysis in two unrelated patients with novel SET mutations

Moeschler JB, Shevell M, Committee on G. Comprehensive evaluation of the child with intellectual disability or global developmental delays. Pediatrics. 2014;134:e903–18. PubMed  Google Scholar  Patel DR, Cabral MD, Ho A, Merrick J. A clinical primer on intellectual disability. Transl Pediatr. 2020;9:S23–35. PubMed  PubMed Central  Google Scholar  Baker K, Devine RT,…

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Reconstructing the cytokine view for the multi-view prediction of COVID-19 mortality | BMC Infectious Diseases

Li H, Liu SM, Yu XH, Tang SL, Tang CK. Coronavirus disease 2019 (COVID-19): current status and future perspectives. Int J Antimicrob Agents. 2020;55(5):105951. Article  CAS  PubMed  PubMed Central  Google Scholar  . virusncov.com/. Iwendi C, Bashir AK, Peshkar A, Sujatha R, Chatterjee JM, Pasupuleti S, et al. COVID-19 Patient Health…

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The Impact of Harisankar Sadasivan’s Research in Revolutionizing Healthcare through Computer System Design

Over the past few years, the healthcare sector has undergone a profound transformation, characterized by the emergence of innovative business models, unexpected partnerships, and a heightened need for efficiency. The conventional pace of digital adoption within healthcare had often lagged behind other industries, but the pandemic acted as a catalyst,…

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[Bug 2239184] New: Review Request: FXdiv

bugzilla.redhat.com/show_bug.cgi?id=2239184 Bug ID: 2239184 Summary: Review Request: FXdiv – A PyTorch fixed point division, math header Product: Fedora Version: rawhide OS: Linux Status: NEW Component: Package Review Severity: medium Assignee: nobody@xxxxxxxxxxxxxxxxx Reporter: trix@xxxxxxxxxx QA Contact: extras-qa@xxxxxxxxxxxxxxxxx CC: package-review@xxxxxxxxxxxxxxxxxxxxxxx Target Milestone: — Classification: Fedora Spec URL: trix.fedorapeople.org/FXdiv.spec SRPM URL: trix.fedorapeople.org/FXdiv-1.0%5egit20201208.63058ef-1.fc40.src.rpm Header-only…

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RNN and LSTM Models for Arabic Speech Commands Recognition Using PyTorch and GPU

Fetzer, J.H., Fetzer, J.H.: What is Artificial Intelligence?, pp. 3–27. Springer, Netherlands (1990) Google Scholar  Goodfellow, I., Bengio, Y., Courville, A.: Deep Learning. MIT Press (2016) Google Scholar  Sherstinsky, A.: Fundamentals of recurrent neural network (RNN) and long short-term memory (LSTM) network. Phys. D 404, 132306 (2020) CrossRef  MathSciNet  MATH  Google…

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Community-developed checklists for publishing images and image analyses

North, A. J. Seeing is believing? A beginners’ guide to practical pitfalls in image acquisition. J. Cell Biol. 172, 9–18 (2006). Article  CAS  PubMed  PubMed Central  Google Scholar  Brown, C. M. Fluorescence microscopy—avoiding the pitfalls. J. Cell Sci. 120, 1703–1705 (2007). Article  CAS  PubMed  Google Scholar  Senft, R. A. et…

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[Bug 2238217] New: Review Request: FP16

bugzilla.redhat.com/show_bug.cgi?id=2238217 Bug ID: 2238217 Summary: Review Request: FP16 – A PyTorch half-precision floating point type dependency Product: Fedora Version: rawhide OS: Linux Status: NEW Component: Package Review Severity: medium Assignee: nobody@xxxxxxxxxxxxxxxxx Reporter: trix@xxxxxxxxxx QA Contact: extras-qa@xxxxxxxxxxxxxxxxx CC: package-review@xxxxxxxxxxxxxxxxxxxxxxx Target Milestone: — Classification: Fedora Spec URL: trix.fedorapeople.org/FP16.spec SRPM URL: trix.fedorapeople.org/FP16-1.0%5egit20210317.0a92994-1.fc40.src.rpm FAS:…

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SC2EGSet: StarCraft II Esport Replay and Game-state Dataset

Reitman, J. G., Anderson-Coto, M. J., Wu, M., Lee, J. S. & Steinkuehler, C. Esports Research: A Literature Review. Games and Culture 15, 32–50, doi.org/10.1177/1555412019840892 (2020). Article  Google Scholar  Chiu, W., Fan, T. C. M., Nam, S.-B. & Sun, P.-H. Knowledge Mapping and Sustainable Development of eSports Research: A Bibliometric…

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Lucifer Yellow uptake by CHO cells exposed to magnetic and electric pulses

Barnes FS, Greenebaum B. Biological and medical aspects of electromagnetic fields. Handbook of biological effects of electromagnetic fields. Third edition. Boca Raton: Taylor and Francis group, CRC Press; 2006.Search in Google Scholar Cameron IL, Short NJ, Markov MS. Safe alternative cancer therapy using electromagnetic fields The Environmentalist 2007; 27: 453-6.10.1007/s10669-007-9075-ySearch…

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Experimental and Theoretical Brownian Dynamics Analysis of Ion Transport During Cellular Electroporation of E. coli Bacteria

Abrahamson, A. A. Born–Mayer-type interatomic potential for neutral ground-state atoms with Z = 2 to Z = 105. Phys. Rev. 178:76–79, 1969. Article  CAS  Google Scholar  Alegun, O., A. Pandeya, J. Cui, I. Ojo, and Y. Wei. Donnan potential across the outer membrane of Gram-negative bacteria and its effect on…

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Identifying and tracking mobile elements in evolving compost communities yields insights into the nanobiome

Kolstø AB. Dynamic bacterial genome organization. Mol Microbiol. 1997;24:241–8. doi.org/10.1046/j.1365-2958.1997.3501715.x. Article  PubMed  Google Scholar  Snel B, Bork P, Huynen MA. Genomes in flux: the evolution of archaeal and proteobacterial gene content. Genome Res. 2002;12:17–25. doi.org/10.1101/gr.176501. Article  CAS  PubMed  Google Scholar  Puigbò P, Lobkovsky AE, Kristensen DM, Wolf YI, Koonin EV….

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Researchers offer new approach for computing

Feature Story | 25-Aug-2023 Texas A&M University Microgrids are self-sufficient power systems that can connect and disconnect from the grid for various purposes. Distributed energy resources such as these are crucial in decarbonizing the energy sector and enhancing the grid’s resilience. Dr. Le Xie, professor in the Department of Electrical…

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Robust deep learning-based PET prognostic imaging biomarker for DLBCL patients: a multicenter study

Li S, Young KH, Medeiros LJ. Diffuse large B-cell lymphoma. Pathology. 2018;50(1):74–87. Article  PubMed  Google Scholar  Vodicka P, Klener P, Trneny M. Diffuse large B-cell lymphoma (DLBCL): early patient management and emerging treatment options. Onco Targets Ther. 2022;6(15):1481–501. Article  Google Scholar  Poletto S, Novo M, Paruzzo L, Frascione PMM, Vitolo…

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Leveraging SageMath and ChatGPT for (orthogonal) diagonalization and singular value decomposition

[1] S. Andrilli, D. Hecker, Elementary Linear Algebra, Sixth edition, Academic Press, Cambridge, Massachusetts, US, 2022. doi.org/10.1016/C2019-0-03227-X [2] H. Anton, C. Rorres, Elementary Linear Algebra: Applications Version, 12th edition, John Wiley & Sons, New York, US, 2013. …

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Genome mining shows that retroviruses are pervasively invading vertebrate genomes

Johnson, W. E. Origins and evolutionary consequences of ancient endogenous retroviruses. Nat. Rev. Microbiol 17, 355–370 (2019). Article  CAS  PubMed  Google Scholar  Stoye, J. P. Studies of endogenous retroviruses reveal a continuing evolutionary saga. Nat. Rev. Microbiol 10, 395–406 (2012). Article  CAS  PubMed  Google Scholar  Zheng, J., Wei, Y. &…

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Delivered complementation in planta (DCIP) enables measurement of peptide-mediated protein delivery efficiency in plants

Jinek, M. et al. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science (New York, N.Y.) 337, 816–821 (2012). Article  CAS  PubMed  Google Scholar  Li, H., Li, J., Chen, J., Yan, L. & Xia, L. Precise modifications of both exogenous and endogenous genes in rice by prime editing. Mol….

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Physiological and evolutionary contexts of a new symbiotic species from the nitrogen-recycling gut community of turtle ants

Klepzig KD, Adams AS, Handelsman J, Raffa KF. Symbioses: a key driver of insect physiological processes, ecological interactions, evolutionary diversification, and impacts on humans. Environ Entomol. 2009;38:67–77. CAS  PubMed  Google Scholar  Dale C, Moran NA. Molecular interactions between bacterial symbionts and their hosts. Cell. 2006;126:453–65. CAS  PubMed  Google Scholar  Salem…

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Novel Non-Contact Technique Uses Facial Colour Changes To Estimate Heart Rate

Register for free to listen to this article Thank you. Listen to this article using the player above. ✖ Heart rate, an essential indicator of overall health and well-being, is traditionally measured by counting the number of cardiac pulses within a specific timeframe. Existing methods, however, require physical contact…

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Evaluation of an optimized germline exomes pipeline using BWA-MEM2 and Dragen-GATK tools

. 2023 Aug 3;18(8):e0288371. doi: 10.1371/journal.pone.0288371. eCollection 2023. Affiliations Expand Affiliations 1 Department of Computer Science, Faculty of Computing and Information Technology, King Abdulaziz University, Jeddah, Saudi Arabia. 2 Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah, Saudi Arabia. Item in Clipboard Nofe Alganmi et al. PLoS…

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Managing the Creative Frontier of Generative AI: The Novelty-Usefulness Tradeoff

Drawing inspiration from human creativity, we explore novelty and usefulness in generative Artificial Intelligence. Creativity, a defining trait of human intelligence, is a subject of extensive study and ongoing discussion (Amabile 1996)3, (Boden et al. 2004)4. Its manifestations, such as divergent thinking that generates novel ideas and convergent thinking that…

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west build MCUboot failed – Nordic Q&A – Nordic DevZone

Procedure to reproduce this issue is as follows.1. cd D:\ncs\v2.3.0\bootloader\mcuboot\boot\zephyr2. west build -b nrf5340dk_nrf5340_cpuapp Log messages of west build are as follows.D:\ncs\v2.3.0\bootloader\mcuboot\boot\zephyr>west build -b nrf5340dk_nrf5340_cpuapp— west build: generating a build system…[100/281] Building C object CMakeFiles/app.dir/nrf_cleanup.c.objFAILED: CMakeFiles/app.dir/nrf_cleanup.c.objD:\ncs\toolchains\v2.3.0\opt\zephyr-sdk\arm-zephyr-eabi\bin\arm-zephyr-eabi-gcc.exe -DKERNEL -DMBEDTLS_CONFIG_FILE=\”mcuboot-mbedtls-cfg.h\” -DNRF5340_XXAA_APPLICATION -DNRF_SKIP_FICR_NS_COPY_TO_RAM -DUSE_PARTITION_MANAGER=0 -D__PROGRAM_START -D__ZEPHYR__=1 -I../include -I../targets -ID:/ncs/v2.3.0/bootloader/mcuboot/boot/bootutil/include -ID:/ncs/v2.3.0/zephyr/include -Izephyr/include/generated -ID:/ncs/v2.3.0/zephyr/soc/arm/nordic_nrf/nrf53 -ID:/ncs/v2.3.0/zephyr/soc/arm/nordic_nrf/common/….

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Stream Download and Visualize the Cars196 Dataset with Kaggle Notebooks from RiatanFbritho

published on 2023-07-07T04:48:10Z cars196 dataset download Download Zip t.co/QitfA7ZtFS Cars196 Dataset: A Comprehensive Guide If you are interested in fine-grained image classification and retrieval, you might have heard of the Cars196 dataset. This dataset contains 16,185 images of 196 classes of cars, ranging from common models to rare and exotic…

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CRISPR/Cas gene editing in the human germline

Please use this url to cite or link to this publication: hdl.handle.net/1854/LU-01H4NG219MN2TWN273AKVS34YQ MLA Bekaert, Bieke, et al. “CRISPR/Cas Gene Editing in the Human Germline.” SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY, vol. 131, ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD, 2022, pp. 93–107, doi:10.1016/j.semcdb.2022.03.012. APA Bekaert, B., Boel, A., Cosemans, G., De…

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Diboron-porphyrin monolayer: a cathode material for aluminum-ion batteries

Y. Chen, Y. Kang, Y. Zhao, L. Wang, J. Liu, Y. Li, Z. Liang, X. He, X. Li, N. Tavajohi, B. Li, J. Energy Chem. 59, 83 (2021) Article  Google Scholar  L. Lu, X. Han, J. Li, J. Hua, M. Ouyang, L. Lu, X. Han, J. Li, J. Hua, M….

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Phase-field model of bilipid membrane electroporation

Abidor I, Arakelyan V, Chernomordik L, Chizmadzhev Y, Pastushenko V, Tarasevich M (1979) Electric breakdown of bilayer lipid membranes: I. The main experimental facts and their qualitative discussion. J Electroanal Chem Interfacial Electrochem 104:37–52 Article  Google Scholar  Alfaro M, Hilhorst D, Matano H (2008) The singular limit of the Allen–Cahn…

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Incongruence in the phylogenomics era

Simpson, G. G. The Principles of Classification and a Classification of Mammals Vol. 85 (American Museum of Natural History, 1945). Jarvis, E. D. et al. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science 346, 1320–1331 (2014). Article  CAS  PubMed  PubMed Central  Google Scholar  Parks,…

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The genome of Acorus deciphers insights into early monocot evolution

Lughadha, E. N. et al. Counting counts: revised estimates of numbers of accepted species of flowering plants, seed plants, vascular plants and land plants with a review of other recent estimates. Phytotaxa 272, 82–88 (2016). Article  Google Scholar  Group, A. P. An update of the Angiosperm Phylogeny Group classification for…

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developing a toolbox for circRNA detection and validation

Please use this url to cite or link to this publication: hdl.handle.net/1854/LU-01H39ZWW24DXPFTGGR5VQRG0BM MLA Vromman, Marieke. Chasing Circles: Developing a Toolbox for CircRNA Detection and Validation. 2023. APA Vromman, M. (2023). Chasing circles: developing a toolbox for circRNA detection and validation. Chicago author-date Vromman, Marieke. 2023. “Chasing Circles: Developing a Toolbox…

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Six generative AI cyber security threats

ChatGPT and competitors such as the recently-launched Google Bard have shot generative artificial intelligence (AI) into the mainstream. Allowing users to create, combine and remix content, generative AI is hailed as a transformative technology for businesses.  As the use of generative AI grows, though, so do concerns about cyber security,…

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Very low p-values

Very low p-values 1 I did a GWAS and got very low p-values for many of the SNPs (I used Bonferroni correction). I wanted to make a Manhattan plot in RStudio. However, it seems that R has a maximum value of around e-324 for plotting the p-values, and is not…

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I’ve completed the Data Cleaning course on Kaggle!

Hello everyone. I take this time today to mention about the industrial visit I had in my college GVPCEW JG . We, as the members of IEEE and IIC members of my college got this opportunity and I’m very thankful about it. As of the Candela Technologies, it is really…

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Transforming Diagnosis and Therapeutics Using Cancer Genomics

Nogrady B (2020) How cancer genomics is transforming diagnosis and treatment. Nature 579(7800):S10–S10 CrossRef  CAS  PubMed  Google Scholar  Tabin CJ et al (1982) Mechanism of activation of a human oncogene. Nature 300(5888):143–149 CrossRef  CAS  PubMed  Google Scholar  Health NIO (2016) The human genome project completion: Frequently asked questions. National Human…

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Illumina Complete Long Reads software analysis workflow for human WGS

Introduction Next-generation sequencing (NGS) enables scientists to decipher the genome for a deeper understanding of biology. Proven Illumina sequencing by synthesis (SBS) chemistry combined with award-winning DRAGEN secondary analysis delivers whole-genome sequencing (WGS) data with outstanding accuracy.1,2 DRAGEN Multigenome (graph) further improves mapping accuracy in challenging regions by ~50%.1 Still,…

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Transfer learning enables predictions in network biology

Vaswani, A. et al. Attention is all you need. Preprint at doi.org/10.48550/arXiv.1706.03762 (2017). Devlin, J., Chang, M. W., Lee, K. & Toutanova, K. BERT: pre-training of deep bidirectional transformers for language understanding. In Proc. 2019 Conference North American Chapter of the Association for Computational Linguistics: Human Language Technologies Vol. 1…

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A compendium of bacterial and archaeal single-cell amplified genomes from oxygen deficient marine waters

Revsbech, N. P. et al. Determination of ultra-low oxygen concentrations in oxygen minimum zones by the STOX sensor. Limnol. Oceanogr.: Methods. 7, 371-381. (2009). Wright, J. J., Konwar, K. M. & Hallam, S. J. Microbial ecology of expanding oxygen minimum zones. Nat. Rev. Microbiol. 10, 381–394 (2012). Article  CAS  PubMed …

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pytorch geometric dgcnn

package manager since it installs all dependencies. (defualt: 5), num_electrodes (int) The number of electrodes. I plugged the DGCNN model into my semantic segmentation framework in which I use other models like PointNet or PointNet++ without problems. This commit does not belong to any branch on this repository, and may…

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AutoDock Koto: A Gradient Boosting Differential Evolution for Molecular Docking

@article{Ji2022AutoDockKA, title={AutoDock Koto: A Gradient Boosting Differential Evolution for Molecular Docking}, author={Junkai Ji and Jin Zhou and Zhangfan Yang and Qiuzhen Lin and Carlos A. Coello Coello}, journal={IEEE Transactions on Evolutionary Computation}, year={2022} } Molecular docking plays a vital role in modern drug discovery, by supporting predictions of the binding…

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A review on blockchain for DNA sequence: security issues, application in DNA classification, challenges and future trends

Abadi M, Agarwal A, Barham P, et al. 2016 TensorFlow: large-scale machine learning on heterogeneous distributedsystems. Cornell University Library website. arxiv.org/abs/1603.04467. Published 2016. Accessed October 2016. Afshar P, Mohammadi A, Plataniotis KN. (2018) Brain tumor type classification via capsule networks, in Proc. 25th IEEE Int Conf Image Process. pp. 3129–3133….

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An intelligent cloud robotics personalized medicine system by assessment of DNA and electronic health records using fuzzy-based progressive alignment sequence (F-Pas)

Ahmad L, Eshlaghy A, Poorebrahimi A, Ebrahimi M, Razavi A (2013) Using three machine learning techniques for predicting breast cancer recurrence. J Health Med Inform 4(124):3 Google Scholar  Bochare A, Gangopadhyay A, Yesha Y, Joshi A, Yesha Y, Brady M, Grasso MA, Rishe N (2014) Integrating domain knowledge in supervised…

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The effects of host quantitative genetic architecture on the gut microbiota composition of Chinook salmon (Oncorhynchus tshawytscha)

Anderson MJ (2001) A new method for non‐parametric multivariate analysis of variance. Austral Ecol 26(1):32–46 Google Scholar  Anderson MJ (2004) PERMDISP: a FORTRAN computer program for permutational analysis of multivariate dispersions (for any two-factor ANOVA design) using permutation tests. Department of Statistics, University of Auckland, New Zealand, 24. Aykanat T,…

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Drug discovery through Covid-19 genome sequencing with siamese graph convolutional neural network

Abdel-Basset M, Hawash H, Elhoseny M, Chakrabortty RK, Ryan M (2020) DeepH-DTA: deep learning for predicting drug-target interactions: a case study of COVID-19 drug repurposing. IEEE Access 8:170433–170451 Article  Google Scholar  Abdulrahman SA, Salem ABM (2020) A efficient deep belief network for Detection of Corona Virus Disease COVID-19. Fusion Pract,…

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Electroporation-Based Biopsy Treatment Planning with Numerical Models and Tissue Phantoms

Dua, R., D. G. Beetner, W. V. Stoecker, and D. C. Wunsch. Detection of basal cell carcinoma using electrical impedance and neural networks. IEEE Trans. Biomed. Eng. 51:66–71, 2004. Article  PubMed  Google Scholar  Doran, C. M., et al. Estimating the economic costs of skin cancer in New South Wales, Australia….

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How will generative AI disrupt data science in drug discovery?

Brown, T. B. et al. In Adv. Neural Inf. Process. Syst. 33 (eds Larochelle, H. et al.) 1877–1901 (Curran Associates, 2020). Open AI. Preprint at arXiv doi.org/10.48550/arXiv.2303.08774 (2023). Nguyen, N. & Nadi, S. In Proc. 19th Intl Conf. Mining Software Repositories 1–5 (Association for Computing Machinery, 2022); doi.org/10.1145/3524842.3528470 Nan, Y….

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Protocols to Study Host-Pathosystems | SpringerLink

Alkooranee JT, Liu S, Aledan TR, Yin Y, Li M (2015) First report of powdery mildew caused by erysiphe cruciferarum on brassica napus in China. Plant Dis 99(11):1651 CrossRef  Google Scholar  Al-Lami HFD, You MP, Barbetti MJ (2019a) Incidence, pathogenicity and diversity of Alternaria spp. associated with alternaria leaf spot…

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Preliminary evaluation of the safety and efficacy of glucose solution infusion through the hepatic artery on irreversible electroporation focusing

Bertacchini, C. et al. Design of an irreversible electroporation system for clinical use. Technol. Cancer Res. Treat. 6, 313–320 (2007). Article  PubMed  Google Scholar  Zhang, Y. et al. MR imaging to assess immediate response to irreversible electroporation for targeted ablation of liver tissues: Preclinical feasibility studies in a rodent model….

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Compilation Fail – Nordic Q&A – Nordic DevZone

ncs 2.3.0 Good morning,for a few days, I can no longer compile a firmware that I use regularly. I don’t understand what could have happened. I’ll post the compilation with the errors if anyone has any ideas about it.Thank you CMAKE/BUILD [cmake] CMake Error at /opt/nordic/ncs/v2.3.0/zephyr/cmake/modules/extensions.cmake:2520 (message): [cmake] BOARD is not…

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Chromosome-level genome assembly and population genomic resource to accelerate orphan crop lablab breeding

FAO. Faostat: FAO Statistical Databases. (Food & Agriculture Organization of the United Nations (FAO), 2000). The war in Ukraine is exposing gaps in the world’s food-systems research. Nature 604, 217–218 (2022). Chapman, M. A., He, Y. & Zhou, M. Beyond a reference genome: pangenomes and population genomics of underutilized and…

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What AI is Tesla using?

Tesla’s AI architecture is dependent on Dojo, the neural network training supercomputer that Musk says can process vast amounts of camera imaging data four times faster than other computing systems. Takedown request View complete answer on techcrunch.com What is the Tesla AI called? History. On April 7, 2022, a display…

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Voltammetric and impedimetric analysis of adriamycin and fish sperm DNA interaction using pencil graphite electrodes

McGown LB, Joseph MJ, Pitner JB et al (1995) The nucleic acid ligand. A new tool for molecular recognition. Anal Chem 67:663A?8A. doi.org/10.1021/ac00117a002 Article  CAS  PubMed  Google Scholar  Topkaya SN, Cetin AE (2019) Determination of electrochemical interaction between 2-(1H-benzimidazol-2-yl) phenol and DNA sequences. Electroanalysis 31:1571?1578. doi.org/10.1002/elan.201900199 Article  CAS  Google Scholar …

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Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species

Giovannoni, J. J. Genetic regulation of fruit development and ripening. Plant Cell 16, S170–S180 (2004). CAS  PubMed  PubMed Central  Google Scholar  Tieman, D. et al. A chemical genetic roadmap to improved tomato flavor. Science 355, 391–394 (2017). CAS  PubMed  Google Scholar  Peralta, I. E., Spooner, D. M. & Knapp, S….

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Medical imaging data science competitions should report dataset demographics and evaluate for bias

Pan, I. et al. Am. J. Roentgenol. 213, 568–574 (2019). Article  Google Scholar  Larrazabal, A. J. et al. Proc. Natl Acad. Sci. USA 117, 12592–12594 (2020). Article  CAS  PubMed  PubMed Central  Google Scholar  Seyyed-Kalantari, L. et al. Nat. Med. 27, 2176–2182 (2021). Article  CAS  PubMed  PubMed Central  Google Scholar  Howard,…

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Audio Classification with Deep Learning in Python | by Leonie Monigatti | Apr, 2023

Fine-tuning image models to tackle domain shift and class imbalance with PyTorch and torchaudio in audio data Classifying bird calls in soundscapes with Machine Learning (Image drawn by the author) Welcome to another edition of “The Kaggle Blueprints”, where we will analyze Kaggle competitions’ winning solutions for lessons we can…

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Can Codon ‘Turbocharge Python’s Notoriously Slow Compiler’?

IEEE Spectrum reports on Codon, a Python compiler specifically developed to, as they put it, “turbocharge Python’s Notoriously slow compiler.” “We do type checking during the compilation process, which lets us avoid all of that expensive type manipulation at runtime,” says Ariya Shajii, an MIT CSAIL graduate student and lead…

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Integrating and optimizing genomic, weather, and secondary trait data for multiclass classification

1 Introduction Modern plant breeding programs are collecting an increasing amount of data of various types from several sources such as multiple secondary phenotypic traits (other than the main trait of interest), high-throughput phenotyping data, weather data, hyper-spectral images, and different types of -omics data such as genomics, transcriptomics, proteomics,…

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Biomimetic natural biomaterials for tissue engineering and regenerative medicine: new biosynthesis methods, recent advances, and emerging applications | Military Medical Research

Naik RR, Singamaneni S. Introduction: bioinspired and biomimetic materials. Chem Rev. 2017;117(20):12581–3. Article  CAS  PubMed  Google Scholar  Huang G, Li F, Zhao X, Ma Y, Li Y, Lin M, et al. Functional and biomimetic materials for engineering of the three-dimensional cell microenvironment. Chem Rev. 2017;117(20):12764–850. Article  CAS  PubMed  PubMed Central …

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An improved hyperparameter optimization framework for AutoML systems using evolutionary algorithms

Feurer, M. & Hutter, F. Hyperparameter optimization. In Automated Machine Learning, The Springer Series on Challenges in Machine Learning 3–33. doi.org/10.1007/978-3-030-05318-5 (2018). Belete, D. M. & Huchaiah, M. D. Grid search in hyperparameter optimization of machine learning models for prediction of HIV/AIDS test results. Int. J. Comput. Appl. 44, 875–886….

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Generalized Mosaic Plots in the ggplot2 Framework

Haley Jeppson (Department of Statistics) , Heike Hofmann (Department of Statistics) 2023-03-09 Graphical methods for categorical variables are not as thoroughly developed when compared with what is available for numeric variables. Categorical variables in scientific publications often appear in the form of bar charts (first published in the Commercial and…

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A hydrogenotrophic Sulfurimonas is globally abundant in deep-sea oxygen-saturated hydrothermal plumes

Inagaki, F., Takai, K., Kobayashi, H., Nealson, K. H. & Horikoshi, K. Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing e-proteobacterium isolated from hydrothermal sediments in the Mid-Okinawa Trough. Int. J. Syst. Evol. Microbiol. 53, 1801–1805 (2003). Article  CAS  PubMed  Google Scholar  Timmer-Ten Hoor, A. A new type of…

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Mapping Cellular Trajectories through Crowded Blood Vessels

By Amanda Randles, PhD Exciting advances in establishing metrics to quantify underlying structure in vascular red blood cell distributions1 will enable us to track individual cancer cells as they travel through crowded blood vessels, randomly careening with red blood cells on their journey through a patient’s body. Why quantify cellular…

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isolation forest kaggle – The AI Blog

What Is Isolation Forest Kaggle? Isolation Forest Kaggle is an unsupervised machine learning technique used for identifying anomalies in data sets. It’s based on the idea of isolating a subset of points from the main data set and predicting those points as anomalies if they stray too far away from…

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Treatment planning in electroporation-based therapies

La electroporación es un fenómeno donde la permeabilidad de la membrana celular se ve aumentada cuando es expuesta a pulsos de campo eléctrico de alta intensidad [1]. Debido al incremento de permeabilidad, iones y macromoléculas pueden cruzar la membrana durante la electroporación. En función de la intensidad del campo, el…

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Diversification of the shell shape and size in Baikal Candonidae ostracods inferred from molecular phylogeny

Claude, J., Paradis, E., Tong, H. & Auffray, J. C. A geometric morphometric assessment of the effects of environment and cladogenesis on the evolution of the turtle shell. Biol. J. Linn. Soc. 79, 485–501 (2003). Article  Google Scholar  Klingenberg, C. P., Duttke, S., Whelan, S. & Kim, M. Developmental plasticity,…

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Bioinformatics Curricula Development | IEEE Computer Society

IEEE Computer Society Team Due to the rapid emergence of biological data acquisition technologies, the explosion of biological data sets has created a need for bioinformatics programs and applications. Bioinformatics is a discipline that is an interwoven network of biology, computer science, and information. The applications and programs in bioinformatics…

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Discovering eQTL Regulatory Patterns Through eQTLMotif | IEEE Conference Publication

Discovering eQTL Regulatory Patterns Through eQTLMotif | IEEE Conference Publication | IEEE Xplore Skip to Main Content …

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Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics

Yu, Z., Loisel, J., Brosseau, D. P., Beilman, D. W. & Hunt, S. J. Global peatland dynamics since the Last Glacial Maximum. Geophys. Res. Lett. 37, L13402 (2010). van Breemen, N. How Sphagnum bogs down other plants. Trends Ecol. Evol. 10, 270–275 (1995). Article  Google Scholar  Johnson, M. G. et…

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