Tag: IOError

How to write out a ID and AA sequence from a SWISS PROT database file into a new file in a specific order using python?

I have a Swiss-Prot database file that contains several Swiss-Prot Files. They are copied and pasted underneath each other. Therefore there is one Swiss-Prot entry after another listed in the same file. I want to write the ID into another file as the header. Immediately underneath, I want to write…

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IOError [errno 2] No such file or directory: ‘-o’

TopHat error: IOError [errno 2] No such file or directory: ‘-o’ 2 Hello everyone. I’m now running tophat in our server. First, I just simply tried “tophat -p 8 -G <gtf_file> <ref_genome> <fa1><fa2>” and it worked. Then I wrote a for loop scripts but It reported error: [2019-04-03 10:49:16] Beginning…

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