Tag: IOError
bcl2fastq error with RunInfo.xml
bcl2fastq error with RunInfo.xml 0 Dear all, I am running to an error with bcl2fastq. I have slightly different setup – I have received ONLY two files from the sequencing company in order to run conversion. One of the files is in tar.gz.dm5 which contains a single line: daac12b61f03f01d303f7b47f9118994 220202_VH00203_129_AAANKJFM5.tar.gz…
How to do Binding and Expression Target Analysis?
How to do Binding and Expression Target Analysis? 0 Hello I used BETA to infer direct target genes from ChIP-seq peaks. Can someone help to let me know what is wrong with the program? I can not get feedback from GitHub. Is there a similar tool that can do the…
How to write out a ID and AA sequence from a SWISS PROT database file into a new file in a specific order using python?
I have a Swiss-Prot database file that contains several Swiss-Prot Files. They are copied and pasted underneath each other. Therefore there is one Swiss-Prot entry after another listed in the same file. I want to write the ID into another file as the header. Immediately underneath, I want to write…
IOError [errno 2] No such file or directory: ‘-o’
TopHat error: IOError [errno 2] No such file or directory: ‘-o’ 2 Hello everyone. I’m now running tophat in our server. First, I just simply tried “tophat -p 8 -G <gtf_file> <ref_genome> <fa1><fa2>” and it worked. Then I wrote a for loop scripts but It reported error: [2019-04-03 10:49:16] Beginning…
