Tag: ION torrent

Quantum-Si Lining Up Early-Access Users for Proteomic Platform in Advance of 2022 Launch

NEW YORK – Proteomics startup Quantum-Si has lined up a number of early-access users for it semiconductor-based protein sensing system in anticipation of a 2022 launch. As of the middle of November, the Guilford, Connecticut-based company had placed instruments at 10 outside institutions, with researchers exploring its utility for purposes…

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Mapping Human Genome

Mapping Human Genome 0 Hi, I have a fastq file of human ampliseq genome from Ion Torrent sequencing. I need to align this to hg19 reference, Which tool will be the most suitable one for this purpose. Please suggest !! Thank You NGS Genome Mapping Reference Human • 14 views…

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An Introduction to BioTechniques and Next-Generation Sequencing

Share Tweet Share Share Email An overview of the latest in next-generation sequencing techniques and technologies. Next-generation sequencing (NGS), or ‘high-throughput sequencing’, is a catch-all term that refers to various modern sequencing techniques. These techniques enable the rapid sequencing of the base pairs…

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Roswell Biotechnologies Launches Molecular Electronics Chip, Pulls Focus to Binding Assays

SAN DIEGO – Roswell Biotechnologies has unveiled the capabilities of its core electronic sensing technology and in doing so established itself as more than just a DNA sequencing firm. “We always had in the back of our minds that you could do diagnostics this way,” said Barry Merriman, the company’s…

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Precision Oncology: Advancing the Development of Liquid Biopsy-Based Diagnostics with NGS

Precision oncology leverages molecular information about cancer to personalize therapy and improve outcomes. The discovery and development of relevant biomarkers is a prerequisite to fulfillment of the promise of precision oncology, but the challenge for researchers is that clinically actionable mutations occur at very low frequency and sourcing biospecimens with…

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Bioinformatics NGS Data Analyst position in Andover, Massachusetts

Job Description: Position Summary: The qualified candidate will join the Analytical Research and Development Microbiology and Strategy Testing organization in Andover, MA, a QC (GMP) laboratory that supports biotherapeutic clinical manufacturing. Candidate will report directly to Microbiology Group Leader (Principal Scientist, Ph.D.). We are recruiting an expert…

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Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service | BMC Bioinformatics

Since the opening of the open-ended Call in February 2020 [30], Laniakea@ReCaS has accepted ten project proposals for a total of 18 Galaxy instances operating on the ReCaS infrastructure that altogether launched almost 30 k jobs, as of March 2021 (Fig. 3). Fig. 3 Cumulative number of jobs launched by all the…

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Wobble Genomics appoints two high-profile non-executive directors

Wobble Genomics has appointed two new non-executive directors to its board as part of its plans to grow and expand the company. The life sciences company, which specialises in RiboNucleic Acid (RNA), appointed Trevor Nicholls and John Leamon to the board. Trevor Nicholls brings 40 years’ experience of building international…

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Technical Support Specialist – BioInformatics – Invitae

POSITION SUMMARYThe Technical Support Specialist provides first level technical support on Invitae Somatic Oncology products from the Invitae office in Boulder, CO. This individual will escalate customer inquiries effectively, collect customer feedback and share this with internal teams to improve products. This individual will assist in coordinating activities for special…

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Technical Support Specialist – BioInformatics – Invitae (Formerly ArcherDx)

POSITION SUMMARYThe Technical Support Specialist provides first level technical support on Invitae Somatic Oncology products from the Invitae office in Boulder, CO. This individual will escalate customer inquiries effectively, collect customer feedback and share this with internal teams to improve products. This individual will assist in coordinating activities for special…

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Technical Support Specialist – BioInformatics at Invitae

POSITION SUMMARYThe Technical Support Specialist provides first level technical support on Invitae Somatic Oncology products from the Invitae office in Boulder, CO. This individual will escalate customer inquiries effectively, collect customer feedback and share this with internal teams to improve products. This individual will assist in coordinating activities for special…

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International Conference on DNA Sequencing and Molecular Biology ICDNASMB in January 2023 in Sydney

The International Research Conference Aims and Objectives The International Research Conference is a federated organization dedicated to bringing together a significant number of diverse scholarly events for presentation within the conference program. Events will run over a span of time during the conference depending on the number and length of…

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Cancer tests to speed up thanks to Irish survivors’ fundraising for new machine

A next generation cancer testing machine at an Irish hospital will cut waiting time for results by eight weeks.  The Ion Torrent Genexus sequencer at Cork University Hospital (CUH) identifies the DNA profiles of cancers which are then used to create the best treatment type to fight the disease.  The…

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Frontiers | Free DNA and Metagenomics Analyses: Evaluation of Free DNA Inactivation Protocols for Shotgun Metagenomics Analysis of Human Biological Matrices

Introduction The advent of modern culture-independent bacterial DNA sequencing technologies allows to achieve an in-depth characterization of the microbial communities inhabiting the human and animal bodies as well as the microbial consortia residing in other environments (Browne et al., 2016; Milani et al., 2017). These innovative metagenomics approaches, such as…

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Bioconductor – rSFFreader

DOI: 10.18129/B9.bioc.rSFFreader     rSFFreader reads in sff files generated by Roche 454 and Life Sciences Ion Torrent sequencers Bioconductor version: Release (3.6) rSFFreader reads sequence, qualities and clip point values from sff files generated by Roche 454 and Life Sciences Ion Torrent sequencers into similar classes as are present…

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Advancing Liquid Biopsy Companion Diagnostics with a Novel Sequencing Initiative

Sponsored content brought to you by   The promise of precision oncology is being realized, with an array of targeted treatments and immunotherapies now available across a spectrum of cancer and other indications. Genomic insights have played a critical role in advancing our understanding of cancer biology and driving the…

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Introduction to DNA Sequencing Technology Part II

Location: 2240 CIEMAS During the past decade, a new generation of high-throughput DNA sequencers has transformed biomedical and biotechnology research. These new technologies have fostered the development of a wide range of applications to basic and clinical research, including SNP discovery, transcriptome profiling, genome sequencing, and epigenetics. The goal of this…

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The future of ‘next generation’ DNA sequencing | Business

Next Generation Sequencing has been with us for little more than a decade, but has already revolutionised biological science. According to Jonas Korlach, chief scientific officer of US-based sequencing company Pacific Biosciences (PacBio) we are now entering a golden age of sequencing technology and the advanced understanding of genetics it…

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Performance assessment of DNA sequencing platforms in the ABRF Next-Generation Sequencing Study

. 2021 Sep;39(9):1129-1140. doi: 10.1038/s41587-021-01049-5. Epub 2021 Sep 9. Jonathan Foox  1   2 , Scott W Tighe  3 , Charles M Nicolet  4 , Justin M Zook  5 , Marta Byrska-Bishop  6 , Wayne E Clarke  6 , Michael M Khayat  7   8 , Medhat Mahmoud  7   8 , Phoebe K Laaguiby  3 , Zachary T…

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Internal validation and improvement of mitochondrial genome sequencing using the Precision ID mtDNA Whole Genome Panel

With the recent advances in next-generation sequencing (NGS), mitochondrial whole-genome sequencing has begun to be applied to the field of the forensic biology as an alternative to the traditional Sanger-type sequencing (STS). However, experimental workflows, commercial solutions, and output data analysis must be strictly validated before being implemented into the…

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nanopore sequencing stock

It holds a 15% stake in the company and has valued its holding at £340m, giving a valuation of more than £2bn for the company. . While the company’s current shareholders have recorded its value at just over £2bn, analysts . Essay from the year 2011 in the subject Business…

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How much starting library to use for Ion Torrent S5 sequencing?

For Ion Torrent S5 sequencing, the user guide for IonChef/S5 recommends 25-60pM of library for each chip, depending on chip type and library fragment size. Ref: assets.thermofisher.com/TFS-Assets/LSG/manuals/MAN0016854_510_520_530_Kit_Chef_UG.pdf (Page 26) I was just told to start with 30pM of library for 530chip, and then adjust from there by looking at the…

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Introduction to DNA Sequencing Technology Part I

Location: 2240 CIEMAS During the past decade, a new generation of high-throughput DNA sequencers has transformed biomedical and biotechnology research. These new technologies have fostered the development of a wide range of applications to basic and clinical research, including SNP discovery, transcriptome profiling, genome sequencing, and epigenetics. The goal of…

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What is the difference between GRCh37 and hs37? And hg19?

This is what I have found so far. Please correct me if I am wrong. GRCh37 w/o patches includes the primary assembly (22 autosomal, X. Y, and non-chromosomal supecontigs) and alternate scaffolds, but not a reference mitogenome. Non-chromosomal supercontigs are the unlocalized and unplaced scaffolds. The rCRS reference mitogenome in…

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Staff Scientist – Bioinformatics | Center for Cancer Research

Required Skills •Ph.D. in Molecular Biology, Genetics, Biomedical Sciences, or related field •Minimum of 5 years post-doctoral experience. •Good understanding of Next Generation Sequencing Data Analysis •Expertise in bulk and Single cell RNAseq, exome or panel sequencing, whole genome sequencing, copy number analyses, gene expression data analyses •Proficiency in at…

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Ion Torrent BAM and FASTQ

Ion Torrent BAM and FASTQ 0 Hi all, Im new to the ION Torrent technology and need your help to figure this out. The Ion GeneStudio™ S5 System generates BAM files as its primary output. when i need a particular FASTQ file, i can use the FileExporter plugin and get…

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