Tag: iseq
CISA Warned About Critical Vulnerabilities in Illumina’s DNA Sequencing Devices
The U.S. Cybersecurity and Infrastructure Security Agency (CISA) and Food and Drug Administration (FDA) have issued an advisory about critical security vulnerabilities in Illumina’s next-generation sequencing (NGS) software. Three of the flaws are rated 10 out of 10 for severity on the Common Vulnerability Scoring System (CVSS), with two others…
Error rates could not be estimated — unsure why – Technical Support
I’m running dada2 on paired end data and getting the same error over and over again. My data are from an 150 PE run on an Illumina iSeq machine, sequencing a 16s fragment for vertebrates. The samples were demultiplexed by Casava based on the i5 and i7 adapters. Some samples…
Bioconductor – iSeq
Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models Bioconductor version: 2.7 This package uses Bayesian hidden Ising models to identify IP-enriched genomic regions from ChIP-seq data. It can be used to analyze the ChIP-seq data with or without controls. Author: Qianxing Mo Maintainer: Qianxing Mo <moq at mskcc.org>…
Strong within-host selection in a maternally inherited obligate symbiont: Buchnera and aphids
Significance Many animals depend on maternally transmitted symbiotic bacteria that provide nutrients or other benefits. The evolution of these symbionts is complicated: natural selection can act on hosts, favoring symbionts that increase host reproduction, or on symbionts, favoring symbionts that spread within hosts. Furthermore, transmission bottlenecks can facilitate the spread…
