Tag: iseq

Bioconductor – iSeq

Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models Bioconductor version: 2.7 This package uses Bayesian hidden Ising models to identify IP-enriched genomic regions from ChIP-seq data. It can be used to analyze the ChIP-seq data with or without controls. Author: Qianxing Mo Maintainer: Qianxing Mo <moq at mskcc.org>…

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Strong within-host selection in a maternally inherited obligate symbiont: Buchnera and aphids

Significance Many animals depend on maternally transmitted symbiotic bacteria that provide nutrients or other benefits. The evolution of these symbionts is complicated: natural selection can act on hosts, favoring symbionts that increase host reproduction, or on symbionts, favoring symbionts that spread within hosts. Furthermore, transmission bottlenecks can facilitate the spread…

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