Tag: jbrowse
NODULIN HOMEOBOX is required for heterochromatin homeostasis in Arabidopsis
NDX is a heterochromatin-associated factor To understand the genome-wide regulatory roles of NDX, we first analyzed its genomic distribution. For this, we performed chromatin immunoprecipitation sequencing (ChIP-seq) in 10-day old Arabidopsis seedlings expressing N-terminally and C-terminally tagged NDX fusion proteins (flag-NDX/ndx1-1(FRI)/flc-2 and NDX-GFP/ndx1-1(FRI)/flc-2, respectively) expressed from their endogenous promoter21,32. The…
ChromoMap: an R package for interactive visualization of multi-omics data and annotation of chromosomes | BMC Bioinformatics
1. Buels R, Yao E, Diesh CM, Hayes RD, Munoz-Torres M, Helt G, Goodstein DM, Elsik CG, Lewis SE, Stein L, et al. JBrowse: a dynamic web platform for genome visualization and analysis. Genome Biol. 2016;17:66. Article Google Scholar 2. Minio A, Lin J, Gaut BS, Cantu D. How single…
PolyAllele Detail
Polymorphism: FLAG_344G02 Name FLAG_344G02 Date last modified 2006-09-11 Aliases 344G02 Tair Accession Polymorphism:1009991284 Type insertion Insertion Type T-DNA Chromosome unknown Mutagen T-DNA insertion Mutation Site gene Associated Polymorphisms Insertion Species Variant (attribution) Length Polymorphic Sequence Polymorphism…
“Simplifing” a very fragmented genome for visualisation?
“Simplifing” a very fragmented genome for visualisation? 1 Hi there, I have a very fragmented reference genome that i want to visualize (with jbrowse or similar) this is the paper for the genome: link here the genome can be found: link2 here are the quast statistics: ######## QUAST Results ########…
Gmod linux error splicing
20-08-2021 The Generic Model Organism System Database Project (GMOD) seeks to runs well on a variety of platforms including such Unix-based systems as Linux, Solaris, a polished user interface for user support, feature requests, and bug reports. Integrated Genome Browser reveals stress-induced alternative splicing of the. Splicing is…
