Tag: ~jobs

[workshop] Building HPC clusters with LXD, Slurm & GPU:s – community-workshop

Welcome to join another exciting community workshop with Juju and related projects! This time @mmrezaie will take us through an interesting deployment of Slurm charms to build a HPC cluster with juju and lxd. Meeting link: meet.google.com/ceh-zber-jnf Date: Fri 2021-12-17 09:00 – 10:00 (UTC) Abstract In this workshop we will…

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PhD-student in synapse biology

Category Research / Academic Location Amsterdam You will be working as a PhD student on the following project: Analysis and annotation of synaptic genes and synaptic functionsSynapses are the computational units of the brain and synaptic dysregulation is central to many brain disorders (‘synaptopathies’), including mental retardation and autism. This…

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laboratory jobs in germany

We wish you a good luck and have a prosperous career. Working at Labcorp | Jobs and Careers at Labcorp 15 GNeuS Postdoc Positions in Neutron Science of 24 Months Each (Full-time Job) FZJ – Forschungszentrum Jülich. What other similar jobs are there to Laboratory jobs in Germany? Clinical Laboratory…

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Intern, Bioinformatics Associate job in San Diego at Hologic

As a leading global healthcare and diagnostics company, we strive to make advances toward greater certainty for our customers by providing them with cutting-edge technology that makes a real difference. We move to narrow the gap between doubt and confidence and work to achieve both incremental and transformational progress to…

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How much benefit do Nature/Science/PNAS papers benefit job competition in industry? : bioinformatics

I’m nearing the end of a PhD and a project I’ve spent the last 2 years is beginning to bear very fruitful results. The professors involved want to submit to one of Nature/Science/PNAS, however doing so will require some further work. Alternatively, we write a Brief Communication in a smaller…

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Bioinformatics Software Developer | IT Job Board

Opportunity to join the computational team of a exciting biotech. Your new company I am currently working alongside an Oxford based biotech that focuses on clinical research and diagnostic solutions. Founded by a team from the University of Oxford, they have aims to progress the future of genetic-based medicine and…

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Postdoctoral Scholar in Microbiology and Bioinformatics, Cumming School of Medicine – University of Calgary – job portal

University of Calgary Home Prospective Students Current Students Alumni Community Faculty & Staff Home Information for Candidates Opportunities by Type Opportunities by Faculty/Unit Home Information for Candidates Opportunities by Type Opportunities by Faculty/Unit Share this Job: Postdoctoral Scholar in Microbiology and Bioinformatics, Cumming School of Medicine Job ID: 24643 Updated:…

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Postdoc or industry scientist job? : comp_chem

Just finished PhD (computational chemistry with strong ML/AI focus). I’d like to stay in research, specifically more on the software/tech side of things, but still slightly involved in physics/chemistry. I have two offers: National lab postdoc paying $85k. They tell me this position has a “high chance of transitioning to…

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Error with file guillaumeKUnitigsAtLeast32bases_all.fasta, kUnitigLengths.txt is of size 0, must be at least of size 1.

Hello, I am trying running an assembly with MaSuRCa but am getting an error at the step: “Computing super reads from PE”. here’s the output with the error: [xxxx@vic Bovidae]$ cd Assembly_test/ [xxxx@vic Assembly_test]$ ls assemble.sh guillaumeKUnitigsAtLeast32bases_all.fasta.tmp masurca_assembly.o4302352 meanAndStdevByPrefix.pe.txt pe_data.tmp quorum_mer_db.jf work1 environment.sh guillaumeKUnitigsAtLeast32bases_all.jump.fasta masurca_config.txt pe.cor.fa pe.renamed.fastq super1.err ESTIMATED_GENOME_SIZE.txt masurca_assembly.e4302352…

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Our Ability Jobs – Mayo Clinic Intern – Bioinformatics (PHD)

Why Mayo Clinic Mayo Clinic is the nation’s best hospital (U.S. News & World Report, 2020-2021) and ranked #1 in more specialties than any other care provider. We have a vast array of opportunities ranging from Nursing, Clinical, to Finance, IT, Administrative, Research and Support Services to name a few….

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How to get count of failed and completed jobs in an array job of slurm ( Slurm, Sbatch )

Problem : ( Scroll to solution ) I am running multiple array jobs using slurm. For a given array job id, let’s say 885881, I want to list the count of failed and completed number of jobs. Something like this: Input: <some-command> -j 885881 Output: Let’s say we have 200…

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Senior Specialist, Bioinformatics Programmer job in United Arab Emirates,

United Arab Emirates United Arab Emirates University Full time Job Description Lead metagenomic and statistical analyses of data sets derived from Next Generation Sequencing (NGS) data. . Initiation/implementation, troubleshooting, and maintenance of analysis software. . Tracking project data and reporting analysis results. . Collaboration with the software engineering groups to…

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[moiexpositoalonsolab/grenepipe] freebayes causes early error about number of threads

Hi Lucas, got a weird one for you. If I change the caller from hapotypecaller to freebayes, I get the error below. It’s doubly strange because it seems to occur well before freebayes would be used in the pipeline. [Sat Dec 11 11:13:02 2021] rule samtools_stats: input: dedup/111D03-1.bam output: qc/samtools-stats/111D03-1.txt…

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Summer Intern -Bioinformatics – Roche – Pleasanton

·  Job facts Summer Intern – (Bioinformatics) The Summer @ Roche Intern Program has been developed to provide students with a fun yet rewarding summer through hands-on experience and numerous opportunities to network with other interns as well as employees in the organization. Additionally, we help our students meet their…

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Research Fellow (Computational Biology, Bioinformatics, Machine Learning)

Research Fellow (Computational Biology, Bioinformatics, Machine Learning) – Career at NTU University in Singapore. Apply for NTU University job and get your career at NTU University! Company: NTU University Job Type: Full Time Work Place: Singapore Salary: SGD 10000 / Month Job Description A Research Fellow position is available in…

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PhD-student in cellular neuroscience (cell biology, life cell imaging)

Category Research / Academic Location Amsterdam You will be working as a PhD student on the following project: Mechanisms of neuromodulator trafficking and secretion in human and mouse neuronsCommunication between neurons in the brain depends on the secretion of chemical signals from secretory vesicles. Most genes known to be involved…

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bioinformatics vacancy

On the one hand, I really liked the diversity of the bioinformatics program, and, with a degree in bioinformatics, there are many possible career paths. Updated on 2 December 2021. Exact wages will depend on experience and the industry an individual works in. Working experience with structural antigen analyses and…

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Is there a database of bioinformatics tools & databases?

All – Some years ago I was speaking to Sean Davis Re: the plethora of bioinformatics tools and databases. I commented to him that merely keeping up with what is available is difficult in the context of a full-time job, let alone mastering what you feel to be the best-in-class…

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Fairring (FAIR + Herring) is a plug-in for PyTorch that provides a process group for distributed training that outperforms NCCL at large scales

TL;DR: Using a variation on Amazon’s “Herring” technique, which leverages reduction servers, we can perform the all-reduce collective faster than NCCL: up to 2x as fast as NCCL in microbenchmarks up to 50% speedup in end-to-end training workloads You can use it right away in your project, with no code…

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Australian Police Say They Are Using Advanced DNA Technology to Identify Crime Suspects

Technology has come as an incredible force multiplier for law-enforcement agencies across the world and they are exploring ways to gain the most out of it to make the world a more secure place. In this effort, Australian federal police say they are using an advanced DNA sequencing technology to predict…

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Research Support Officer job with EMBL

EMBL’s European Bioinformatics Institute (EMBL-EBI) is seeking a Research Support Officer to assist the Service Team Leaders leading EMBL-EBI’s resources with overall scientific management. The Research Support Officer role will provide an exciting opportunity to develop your skills in a wide range of areas. The nature of the role is…

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Bioinformatics Librarian job with University of Pennsylvania

Bioinformatics Librarian University Overview The University of Pennsylvania, the largest private employer in Philadelphia, is a world-renowned leader in education, research, and innovation. This historic, Ivy League school consistently ranks among the top 10 universities in the annual U.S. News & World Report survey. Penn has 12 highly-regarded schools that…

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How to use the Interactive Desktop on Open OnDemand

The Interactive Desktop app provides a grapical user interface that runs as a batch job on pronto. Any module that can be loaded in a normal Pronto batch job can be loaded within the interactive desktop. In addition, the following modules have easy-to-use launcher shortcuts. Matlab Mathematica RStudio Getting Started…

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Genome Bioinformatics Analyst – Pittsburgh

**Description** UPMC Presbyterian is hiring a Genome Bioinformatics Analyst to join the Molecular and Genomic Pathology Laboratory (MGP) team! This role will work a daylight schedule Monday through Friday. No weekends or holidays are required! The Molecular and Genomic Pathology Laboratory (MGP) is a dynamic state-of-the-art clinical laboratory that prides…

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What does a job interview coding challenge look like? : bioinformatics

I’m applying in January and some applications send a coding challenge. What does it typically look like so I can take this time before applying to prepare. I have coding experience but its one aspect I’m not very confident in so would really appreciate any help. I know SWE use…

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JupyterHub & IRkernel misbehaving — next steps for debugging? – JupyterHub

I am trying to get an R kernel working in Jupyterhub — it was working on an Ubuntu 16.04 install but it stopped when I upgraded to 20.04 and did a fresh install of everything (default proxy and processor setups; no docker complexities; installed through pip). I followed the instructions…

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Remote Principal Data Scientist (pandas/jupyter Or R/rstudio) at Turing

Job Description Apply to this job here: turing.com/Nrdee7 Only candidates with 12+ years of software development experience are eligible for this role. Turing.com is looking for a Principal Data Scientist on behalf of a well-established next-generation consumer products company with a global footprint. The selected candidate will be the center…

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NoMachine Forums – NoMachine and slurm created cgroups

Hello everyone, We installed NoMachine on clusters we use remotely. These clusters are handled with a scheduler called slurm. Every time a user allocate a node with slurm, its session enters a cgroup which bounds the resources the user can use. Slurm allows for example one user to use a…

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Senior Programme Manager – EMBL-EBI Services job with EMBL

EMBL’s European Bioinformatics Institute (EMBL-EBI) is seeking a Senior Programme Manager to lead strategic initiatives and projects to support the effective long-term management and delivery of the EMBL-EBI data services portfolio. These services make a variety of data openly available to support life sciences research, and are accessed millions of…

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Postdoc, Full Time, Charlotte jobs

Broaden your search Refine your search Sign up for job alerts Get new jobs for this search by email The University of Southern Mississippi welcomes applications for Director of the School of Performing and Visual Arts Diversity Job Inside Higher Ed welcomes applications for an Audience Development and Social Media…

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Postdoc Job in Durham, North Carolina – 333975 | Postdoctoral Associate-Biostatistics at Biostatistics & Bioinformatics in Durham, North Carolina

Postdoctoral Associate Position Description: This position is to develop innovative statistical methods to detect treatment effect heterogeneity by using multiple data sources from randomized clinical trials to electronic health record data in the application of mental health (schizophrenia and major depressive disorder) under the supervision of…

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Problem with using flagstat after bowtie2 alignment

I’m running bowtie2 to align multiple samples to one reference genome, and then run samtools flagstats to output the results. All but two samples have aligned and I’ve managed to run flagstat on them. For those two samples, when I run flagstat, I first get: [W::bam_hdr_read] EOF marker is absent….

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Bioinformatics jobs in Worldwide

Broaden your search Refine your search Sign up for job alerts Get new jobs for this search by email Found 1 job If you are a post-graduate student with an interest in the pharmaceutical industry,…

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Engineer II, Machine Learning (Pytorch/Torch/Caffee) Job For 3-6 Year Exp In Harman Connected Services Corporation India Private Limited Bengaluru / Bangalore – 4004753

A Career at HARMANAs a technology leader that is rapidly on the move, HARMAN is filled with people who are focused on making life better. Innovation, inclusivity and teamwork are a part of our DNA. When you add that to the challenges we take on and solve together, you’ll discover…

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QualiMap Multi-Sample BamQC does not load in center panel – usegalaxy.eu support

Dear @Mario_Garcia,The tool should work, I tested it right now with some test data. Please make sure: (a) your data was correctly analyzed by QualiMap BAM QC (i.e., the files should not be empty),(b) your files come from the same organism and data library(c) and you data has no weird…

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Research Fellow in Bioinformatics at UCL

We are seeking a postdoctoral bioinformatician in the Department ofRenal Medicine, Centre for Genetics and Genomics (www.ucl.ac.uk/nephrology/research/centre-genetics-and-genomics).  Working with clinical and non-clinical colleagues, the post holder will design, develop and perform analyses of large-scale genomic data (eg from the 100,000 Genomes Project) to answer clinically relevant questions about the causes…

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IISER Bhopal researchers believe they have sequenced the genome of the turmeric plant- Edexlive

IISER Bhopal | Pic: Wikimedia A team of researchers from the Indian Institute of Science Education and Research (IISER) Bhopal claim to have sequenced the genome of the turmeric plant for the first time in the world. The results of their work have been published in a Nature group journal…

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Job Application for Principal Scientist, Bioinformatics at GentiBio

About GentiBio GentiBio is an emerging biotherapeutics company co-founded by pioneers in Treg biology and synthetic immunology from Seattle Children’s Research Institute, Benaroya Research Institute, and MIGAL Galilee Research Institute. GentiBio is focused on the development of EngTregs programmed to treat autoimmune, alloimmune, autoinflammatory and allergic diseases. GentiBio’s proprietary autologous…

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Bioinformatics Specialist (Analyst 2 – Clinical Data) (contract) Job Opening in San Diego, CA at JnJ

EMAIL* UPLOAD YOUR RESUME By clicking Agree, I consent to our data usage policies as stated here By agreeing to submit your resume, you consent (in accordance with our Terms of Use and Privacy Policy) to: A) Salary.com storing your resume for purposes of providing you with the job posting…

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4 Dead Infants, a Convicted Mother, and a Genetic Mystery

That evening she wrote an email to Folbigg’s lawyer and said she was in. As she dug into the investigation, she assumed that her scientific work would help guide the legal system closer to the truth. She had no idea that over the course of two all-consuming years, she would…

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IISER Bhopal unveils turmeric genome for the first time in the world

A team of IISER Bhopal researchers, led by Dr Vineet K Sharma, Associate Professor, Department of Biological Sciences, have sequenced the genome of the turmeric plant for the first time in the world. The results of their path-breaking work have recently been published in a journal belonging to the prestigious…

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Doug and Pam Soltis in top 1% of most highly cited scientists

Press release from Florida Museum of Natural History BY JERALD PINSON Doug and Pam Soltis of the Florida Museum of Natural History were recognized last month as being in the top 1% of highly cited researchers. This year’s list, which was curated and published by the analytical organization Clarivate, lauded researchers from…

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Director of Bioinformatics Research Job Opening in Hudson, FL at M2GEN

Director of Bioinformatics Research Location:  Remote Status:  Full-time ExemptReports to:  VP Bioinformatics & BiostatisticsDirect Reports:  Build and lead a team consisting of bioinformatics research scientists that support internal business development client engagements, as well as, external academic partner research projects and biopharma sponsored bioinformatics services Who we are M2GEN is…

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Job: Software Engineer 2 (Bioinformatics)

Job Description Summary We are looking for a highly driven and talented software engineer to join the DRAGEN verification Team. The team focuses on developing tools to analyze large genomic datasets, setting up a CI/CD and automated testing infrastructure and improving the databases and websites that we use for the…

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Biology Career Job Links

Web Resources Virtualab Home AgricultureBioinformaticsBiophysicsCancerCareerCellBiologyDevelopmentEcologyEducationFunGeneticsGenomicsHealthLabMicrobiologyMolecularMoleculeNeurosciencesPaleontologyPlantPolicySociety Instructionsupplierprotocol… Career Links AACC Onlin – American Association of Clinical Chemistry career center. Academia : Job listings in academia, major US universities, and positions in Australia, Canada, and Europe. Academic Employment Network: US academic positions. Academic network : Jobs in higher education. Academic, Physician…

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European Bioinformatics Institute | EMBL-EBI hiring Software Engineer in Hinxton, England, United Kingdom

In this role you will analyse data, develop production software, create technical documents, take part in the daily Scrum meeting, as well as communicate with other teams at EMBL-EBI and/or with our international collaboration partners. Scalability will be an important feature of your clear, concise, well tested and documented code….

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Stem cell study paves way for gene editing to produce cultured meat

Scientists have obtained stem cells from pigs, sheep, and cattle without the need for serum, feeder cells, or antibiotics to pave the way for “manufacturing cell-cultured meat and breeding enhanced livestock”. The researchers for the study were mainly from the University of Nottingham’s School of Biosciences in the UK, in…

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PhD student in Molecular Toxicology and iPSC-derived Cell Systems

Category Research / Academic Location Amsterdam We are looking for a motivated PhD student with strong background in human cell culture systems and omics data handling for toxicity testing to develop research within the NWA-ORC project Virtual Human Platform for Safety assessment (VHP4Safety.nl). Your duties Optimize and characterize human induced…

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Research Associate, Bioinformatics job with UNIVERSITY OF WESTERN AUSTRALIA

UWA Medical School Contribute to fundamental insights into tumour biology Position based at Harry Perkins Institute of Medical Research in Nedlands 2 years fixed term, full time role Salary range: Level A $72,780 – $97,946p.a plus 17% superannuation The University of Western Australia (UWA) is…

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Mark Emmert said the toughest job in America is university president. Here are some harder jobs.

NCAA president Mark Emmert believes that being a university president is a very, very difficult. How tough does he think it is? Tougher than literally any other job. NCAA president Mark Emmert: “Being a university president is the hardest job in America” — Brett McMurphy (@Brett_McMurphy) December 8, 2021 I’ll…

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New resource tracks genetic variations in Han Chinese populations | Spectrum

Yongyuan Dai / Getty Images Researchers in China have cataloged genetic variations among nearly 3,000 Chinese people and constructed a comprehensive new reference genome for this population. The resource, which is called NyuWa and is freely available online, could help researchers discern the effects of genetic variants found in…

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Turmeric genes evolved in response to environmental stressors: Study

Hyderabad: For the first time in the world, IISER Bhopal has successfully conducted the genome sequencing of turmeric, making a path-breaking revelation to the field of herbal medicines. A team of researchers from the Indian Institute of Science Education and Research (IISER), Bhopal, led by Dr. Vineet K. Sharma, associate…

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Bioinformatics Scientist, Discovery Biology job with Surrozen

Surrozen is a biotechnology company focused on discovering and developing novel regenerative medicines that unlock the powerful self-renewal properties of the body through specific control of the Wnt signaling pathway. Surrozen was founded by five leading-edge scientists: K. Christopher Garcia, Ph.D., Roel Nusse, Ph.D. and Calvin Kuo, M.D., Ph.D. from…

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Postdoctoral Fellow job with Cleveland Clinic – Genomic Medicine Institute

We are seeking multiple Experimental and Bioinformatics research positions (including Postdoctoral Research Fellows and Research Associate) to join the Alzheimer’s Network Medicine and Artificial Intelligence (AI) research group (www.lerner.ccf.org/gmi/cheng/) led by Dr. Feixiong Cheng at the Genomic Medicine Institute, Cleveland Clinic Lerner Research Institute, and Department of Molecular Medicine at…

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The University of Western Australia

Research Associate (Bioinformatics) Job no: 508367 Work type: full time Location: Harry Perkins Institute of Medical Research Categories: Health and Medical Sciences UWA Medical School Contribute to fundamental insights into tumour biology Position based at Harry Perkins Institute of Medical Research in Nedlands 2 years fixed term, full time…

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Running SortMeRNA on Multiple Files

Running SortMeRNA on Multiple Files 0 Hi all, I am VERY new to SortMeRNA (I’m a PhD student taking a bioinformatics class that has been very poorly taught). I have 27 paired samples for a total of 54 samples named like this: SRR13711719_1_val_1.fq SRR13711719_2_val_2.fq. So the format is _1_val_1.fq and…

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main-arm64-default][devel/RStudio] Failed for RStudio-2021.09.1+372 in build

You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: ampere2.nyi.freebsd.org/data/main-arm64-default/p7539e33f88ff_s169b368a62/logs/RStudio-2021.09.1+372.log Build URL: ampere2.nyi.freebsd.org/build.html?mastername=main-arm64-default&build=p7539e33f88ff_s169b368a62 Log: =>> Building devel/RStudio build started at Wed Dec 8…

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Problem connecting singleuser pod to spark – Zero to JupyterHub on Kubernetes

I’m having an issue connecting to Spark from a singleuser pod launched via Jupyterhub 2.0. I suspect it’s a networking issue. I can launch a dedicated jupyterlab pod and connect to the Spark instance; I need to set the spark.driver.host to the IP addr of the pod, but once done,…

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Bioscience company announces Westminster expansion | Business

Genapsys, a Silicon Valley-based bioscience company, will expand into Westminster and plans to hire up to 250 employees for its new location, officials said Wednesday. Genapsys develops technology that it says will pave the way for universal access to genomic information and make more advanced DNA studies easier for both…

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Bioinformatics Data Scientist in South West London (SW11) | X4 Group

A leading Researcher in rare diseases is searching for an experienced Lead Data Scientist to join them on a permanent, or contract to perm basis. The Company: Working in a ground-breaking area of medicine, they are continuously researching and developing unique genetic codes to help diagnose, treat and prevent illnesses….

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h2o.ai – Killing xxx because the cloud is no longer accepting new H2O nodes

plz help~ i create h2o-stateful-set which set replicas: 3, then i run a h2o automl job, it works well. but suddenly one of pod breakdown, i use kubectl delete pod h2o-k8s-1 to delete this pod. the statefulset create a new pod has same name h2o-k8s-1. But here’s the problem, the…

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Quantum-Si hiring Senior/Staff Bioinformatics Scientist in San Diego, California, United States

Company DescriptionQuantum-Si is pioneering a new generation of technology to create the market of Next Generation Protein Sequencing (NGPS). Similar to Next Generation DNA Sequencing (NGS), which gave us a blueprint of what could happen by studying our DNA, NGPS enables an unbiased view of the proteome through improved scale,…

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Lee Placito Fellowship in Bioinformatics

Job Details Lee Placito Fellowship in Bioinformatics Nuffield Department of Surgical Sciences, Old Road Campus Research Building, Headington, Oxford Grade 7: £33,309 – £40,927 per annum Contract type: Fixed term for 3 years Hours: Full-time About the role We are looking for an enthusiastic bioinformatician who has an interest in…

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Chemistry & Life Sciences Prosecution Associate / Patent Agent / Patent Scientist – Bioinformatics (CA, DC, NC) job in Winston Salem, NC

An International Law Firm’s Chemistry & Life Sciences Patent Prosecution team seeks either a USPTO-registered Attorney or Patent Agent/Scientist with strong educational and/or industry experience in Bioinformatics, Computational Biology, Artificial Intelligence or a closely related field. Preferably seeking a candidate with an advanced degree (e.g., MS or PhD) or 3+…

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Part-Time Lecturer job with Northeastern University

Part-Time Lecturer About Northeastern:Founded in 1898, Northeastern is a global research university and the recognized leader in experience-driven lifelong learning. Our world-renowned experiential approach empowers our students, faculty, alumni, and partners to create impact far beyond the confines of discipline, degree, and campus. Our locations—in Boston; Charlotte, North Carolina; London;…

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Senior Research Associate: Veterinary and Bacterial Genome Bioinformatics Fellowship job with University of Bristol

The role This appointment in Bristol Veterinary School (BVS) at the University’s Langford Campus offers the opportunity for a successful early-career researcher to develop their research independence in the area of veterinary and bacterial genome bioinformatics while being a key player in the delivery of clinical veterinary research within the…

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Top Masters Programs for Bioinformatics in Europe

Bioinformatics is a growing discipline as an extended branch of Biology. It offers a multitude of career options within the sectors of pharmaceuticals and hospitals. A bioinformatics specialist can work in several industries which require data acquisition and application of fundamentals of available biological data. The requirement of bioinformatics in…

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Research Fellow/Senior Research Fellow in Translational Immunology job with UNIVERSITY OF SOUTHAMPTON

Cancer Sciences Location: Southampton General Hospital Salary: £31,406 to £40,927 per annum Full Time Fixed Term for 12 months Closing Date: Tuesday 04 January 2022 Interview Date: To be confirmed Reference: 1628021CM Exploiting the innate and adaptive immune interface for effective cancer therapy (CRUK). A bioinformatician position is available with Dr…

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Research Assistant / Associate (Data Scientist) job with NEWCASTLE UNIVERSITY

The Role We are looking for a dynamic data scientist / bioinformatician to develop bioinformatics pipelines to identify biomarkers and risk profiles using extensive well-annotated clinical trial datasets comprising patient level data that has been collected by the HARMONY alliance (www.harmony-alliance.eu/). The HARMONY alliance is a big data project funded…

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Bioinformatics specialist in fungal genomics at University of Kent

Interview Date: Friday 28 January 2022 Contract Type: Fixed Term – 18 Months A postdoctoral research associate position is available in the School of Biosciences at the University of Kent. We are seeking to recruit a bioinformatician with an enthusiastic, problem solving approach to join the Buscaino lab. The successful…

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r – RSQlite – Find values with most occurences in group

I’m using RSQlite to import Datasets from an SQlite-Database. There are multiple millions of observations within the Database. Therefor I’d like to do as much as possible of Data selection and aggregation within the Database. At some point I need to aggregate a character variable. I want to get the…

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Staff Bioinformatics Scientist at GRAIL

Job Description GRAIL is a healthcare company whose mission is to detect cancer early, when it can be cured. GRAIL is focused on alleviating the global burden of cancer by developing pioneering technology to detect and identify multiple deadly cancer types early. The company is using the power of next-generation…

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Slurm installation for multiple users – Install, Configure and Update

Welcome to the forum @bzuber.As you already suspected, jobs submitted through the web UI are counted against the quota of the system user that owns the cryoSPARC instance. Cluster resources and quota need to be allocated according to the combined needs of all cryoSPARC users. You may still capture information…

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Postdoctoral Research Scientist, Bioinformatics – Turajlic lab job with The Francis Crick Institute

Reports to: Samra Turajlic [C] Job Description: Project summary An exciting opportunity to be part of a pioneering biomedical research institute, dedicated to innovation and science, in the laboratory of Samra Turajlic (Cancer Dynamics, www.crick.ac.uk/research/labs/samra-turajlic). We are seeking a highly collaborative and self-motivated post-doctoral bioinformatician to work within our comprehensive…

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Update/ install Python scikit learn latest development version in Windows

Update/ install Python scikit learn latest development version in Windows I am trying to replace/install my Python scikit-learn 0.17.0 with 0.18.dev0 latest development version in Windows, so that I can try out sklearn.neural_network.MLPClassifier. After reading and trying the advanced user manual here (scikit-learn.org/stable/developers/advanced_installation.html#install-bleeding-edge), I am kinda stuck. pip install -U…

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Galaxy Is a Suitable Bioinformatics Platform for the Molecular Diagnosis of Human Genetic Disorders Using High-Throughput Sequencing Data Analysis. Five Years of Experience in a Clinical Laboratory

Background: To date, the usage of Galaxy, an open-source bioinformatics platform, has been reported primarily in research. We report 5 years’ experience (2015 to 2020) with Galaxy in our hospital, as part of the “Assistance Publique-Hôpitaux de Paris” (AP-HP), to demonstrate its suitability for high-throughput sequencing (HTS) data analysis in…

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Bioinformatics Analyst at University of Miami in Miami, Florida

Job Description: Current Employees: If you are a current Staff, Faculty or Temporary employee at the University of Miami, please click here to log in to Workday to use the internal application process. To learn how to apply for a faculty or staff position using the Career worklet, please review…

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Post Doctoral Research Associate Bioinformatics job with Beth Israel Deaconess Medical Center/Harvard Medical School

The Hide Lab at Harvard Medical School and BIDMC seeks a bioinformatics/computational biology postdoctoral fellow for training. We focus on target discovery, and diagnostic and therapeutic applications for Alzheimer’s Disease. The position is under the direction of Dr. Winston Hide (Systems RNA medicine) and is available immediately. For a list of publications…

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In slurm; count number of folders in directory, encounter directory error

I have a lot of data to run through using slurm and I figured I could use a for loop sequence as it’s based on a range. The data takes a long time to generate so altering the output structure is not an option. The problem: When running my job…

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Research Fellow, Precision Medicine job with NATIONAL UNIVERSITY OF SINGAPORE

Job Description The NUS Resilience & Growth Research Fellow (NUS R&G-RF) will be responsible to work closely with the Principal Investigator and study team members to ensure the successful completion of industry-linked non-coding RNA (ncRNA) biomarker discovery research projects and subsequent functional validation of the identified ncRNA biomarkers in a…

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find positions of a short sequence in a genome

Here’s a demo Python script you can modify for your use, which suggests the rough principle: #!/usr/bin/env python import sys import re bed = “””chr1t0t10tABCDEFGHIJ chr1t5t15tFGHIJABCDO chr1t10t20tABCDOPABCD””” string_to_match = sys.argv[1] pattern = re.compile(string_to_match) for line in bed.split(“n”): (chr, start, stop, id) = line.split(“t”) for match in pattern.finditer(id): sys.stdout.write(“t”.join([chr, str(int(start) +…

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Philippines: Step up forensics in routine meat inspection

The Philippines government should consider the use of forensics in routine meat inspections to increase the safety of meat and meat products, including pork. That was a recommendation that was recently given by scientists from the University of the Philippines, based in the country’s capital Manila. In a recent study…

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Top 5 Machine Learning Competitive Platforms in 2021

Author(s): Abid Ali Awan Careers Discovering the most popular Machine learning competitive platform in 2021 to showcase your recently acquired skills. Image by Author | Elements by Starline, Macrovector Introduction Reading books on machine learning, taking a 98-hour course,s and developing coding experience is good for a solid foundation but how…

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[slurm-users] Enforce shell options for job environment when submitting job?

Hi, does anybody know a simple way to enforce certain shell options such as set -o errexit (a.k.a. set -e) set -o pipefail and maybe also set -o nounset (a.k.a. set -u) for the job environment at job submission time (without modifying the batch scripts themselves)? Background of…

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Big gaps in quest to sequence genomes of all animals — ScienceDaily

Efforts to sequence the genomes of the world’s animals tend to focus on those that most resemble humans with the work conducted almost entirely in the Global North, according to an analysis led by Washington State University. In a paper published in the Proceedings of the National Academies of Sciences,…

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Integrated DNA Technologies hiring Bioinformatics Staff Scientist in Boston, Massachusetts, United States

IDT is the leading manufacturer of custom oligonucleotides and proprietary technologies for genomics applications. Our work is complex and cutting-edge, and our team members are curious, creative thinkers who understand that good data drives smart decisions. At IDT, we realize that although science may be uniform, people are unique. We…

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Genomelink is a one-stop-shop for your DNA data, but is it safe?

While there are plenty of ways an employer can legally fire an employee, there’s also a long list of unethical and illegal methods. If you suspect you’ve been wrongfully terminated from your job, it’s imperative that you fight back. Common Signs of Wrongful Termination Research shows that around 150,000 people…

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Problem-Solving Before Instruction (PS-I): A Protocol for Assessment and Intervention in Students with Different Abilities

This protocol guides researchers and educators through implementation of the Problem-Solving before Instruction approach (PS-I) in an undergraduate statistics class. It also describes an embedded experimental evaluation of this implementation, where the efficacy of PS-I is measured in terms of learning and motivation in students with different cognitive and affective…

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Genome sequencing efforts overlook huge swathes of diversity and opportunity, researchers warn

Efforts to sequence the genomes of the world’s animals tend to focus on those that most resemble humans with the work conducted almost entirely in the Global North, according to an analysis led by Washington State University. In a paper published in the Proceedings of the National Academies of Sciences,…

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Postdoctoral Fellow – Structural biology of Plasmodium falciparum membrane Jobs in Hamburg at European Molecular Biology Laboratory –

Postdoctoral Fellow – Structural biology of Plasmodium falciparum membrane complexes We are seeking for a highly motivated structural biologist with cryo-EM expertise to study membrane complexes of the malaria parasite Plasmodium falciparum. The research portfolio of the Hamburg Unit is mainly focused on structures of membrane proteins and large protein…

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Slurm srun cannot allocate ressources for GPUs – Invalid generic resource specification

I am able to launch a job on a GPU server the traditional way (using CPU and MEM as consumables): ~ srun -c 1 –mem 1M -w serverGpu1 hostname serverGpu1 but trying to use the GPUs will give an error: ~ srun -c 1 –mem 1M –gres=gpu:1 hostname srun: error:…

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Postdoctoral Researcher in Cheminformatics / Bioinformatics (m/f/d) – Friedrich-Schiller-University Jena

Your application The position is limited until June 30, 2025. This is a full-time position (40 hours per week). The project is supervised by Prof. Dr. C. Steinbeck; the place of work will be Jena – City of Science. FSU Jena and CRC AquaDiva seek to increase the number of…

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Postdoc – Study how gene regulation drives GxE and adaptation to help breed resilient crops job with North Carolina State University – Gage Lab

We are hiring a postdoctoral fellow with experience in quantitative genetics, genomics, plant breeding, bioinformatics, statistical genetics, and/or molecular genetics. Researchers in human, animal, and other model organisms and evolution are especially encouraged to apply. The Gage Lab is a new research group in the department of Crop and Soil…

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Semipublic Intellectual Sessions: What Comes After CRISPR?

On November 5, 2021, the Los Angeles Review of Books (LARB) hosted five scholars to discuss genome editing technologies, the systems within which they emerge and are deployed, and what they teach us about the values of our society. This panel was organized by Julien Crockett and Michele Pridmore-Brown as…

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Vincerx Pharma Hosting Key Opinion Leader Webinar on VIP152 Data Presented at the American Society of Hematology Annual Meeting

PALO ALTO, Calif., Dec. 06, 2021 (GLOBE NEWSWIRE) — Vincerx Pharma, Inc. (Nasdaq: VINC), a biopharmaceutical company aspiring to address the unmet medical needs of patients with cancer through paradigm-shifting therapeutics, today announced that it will host a key opinion leader (KOL) webinar to discuss the data presented on the…

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Bioinformatics Scientist – Xtalks

GRAIL is a healthcare company whose mission is to detect cancer early, when it can be cured. GRAIL is focused on alleviating the global burden of cancer by developing pioneering technology to detect and identify multiple deadly cancer types early. The company is using the power of next-generation sequencing, population-scale…

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Postdoctoral Researcher in Plant-Thrips-Virus Interactions

Category Research / Academic Location Amsterdam Are you a skilled researcher in Plant Biology and intrigued by how thrips manipulates plant defenses and how microsporidia and plant viruses manipulate thrips? We are seeking a postdoctoral researcher for an ambitious project on the effectorome of thrips and the in planta interactome….

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Parallel mingw builds under Windows fail randomly

We’ve observed an intermittent failure of the Windows-mingw CI job. This job runs python windows_testing.py src logs -b mingw under Windows, which in turn runs mingw32-make. So far we’ve observed the failure only on development, but it may be a statistical fluke. Logs: 21:22:57 C:buildsworkspacembed-tls-nightly-tests>python windows_testing.py src logs -b mingw…

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Job vacancy in Global Worldwide: Technical Support Engineer (Linux expertise) at RStudio

Rstudio creates great software that helps people understand data and make better decisions in real-world applicationsOur core offering is an open source data science platform, and we aim to make it available to everyone, regardless of their economic meansWe are seeking a technical support engineer to join a creative and…

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Alpha Coding Solutions hiring Medical Coding Jobs- Biotech,biomedical,biochem,bioinformatics-ct Monicka in Tiruvettipuram, Tamil Nadu, India

Job DescriptionPosition : Medical Coder CT:Monica HR-9940299143 7806897286(Whatsapp Only) Medical Coding is the process of converting Verbal Descriptions into numeric or alpha numeric by using ICD 10-CM, CPT HCPCS. As per HIPAA rules healthcare providers need efficient Medical Coders No of vacancy: 400 Eligibility Bio medical Bio chemistry Bio technology…

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