Tag: KeyError

Substitute variables in an expression in Sagemath

Somewhat similar to this question, I was trying to evaluate a Boolean expression given the right hand side variables in Sage. For simplicity, say, my Boolean expression is, $y=x_0+x_1$. For each of $(x_0,x_1) in {(0,0),(0,1),(1,0),(1,1)}$, I want to evaluate $y$. This is the basic code block to get started. Note…

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Leaderboard download fails if leaderboard only contains one page

kaggle competitions leaderboard –download lux-ai-2021  ✔  kaggle  Traceback (most recent call last): File “/usr/local/Caskroom/miniforge/base/envs/kaggle/bin/kaggle”, line 11, in <module> sys.exit(main()) File “/usr/local/Caskroom/miniforge/base/envs/kaggle/lib/python3.9/site-packages/kaggle/cli.py”, line 67, in main out = args.func(**command_args) File “/usr/local/Caskroom/miniforge/base/envs/kaggle/lib/python3.9/site-packages/kaggle/api/kaggle_api_extended.py”, line 831, in competition_leaderboard_cli self.competition_leaderboard_download(competition, path, quiet) File “/usr/local/Caskroom/miniforge/base/envs/kaggle/lib/python3.9/site-packages/kaggle/api/kaggle_api_extended.py”, line 784, in competition_leaderboard_download self.download_file(response, outfile, quiet) File…

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Get chromosome sizes from fasta file

Get chromosome sizes from fasta file 4 Hello, I’m wondering whether there is a program that could calculate chromosome sizes from any fasta file? The idea is to generate a tab file like the one expected in bedtools genomecov for example. I know there’s the fetchChromSize program from UCSC, but…

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