Tag: kissplice

Kissplice — error – AttributeError: ‘NoneType’ object has no attribute ‘returncode’

I am running This is KisSplice, version 2.5.0 The command line was: /gpfs/runtime/opt/kissplice/2.5.0/bin/kissplice -r sample_example/reads1.fa -r sample_example/reads2.fa Using the read files: sample_example/reads1.fa sample_example/reads2.fa Results will be stored in: /gpfs/data/epscor/erubin/SNPtest/peach/results Summary log file will be saved in: /gpfs/data/epscor/erubin/SNPtest/peach/results/kissplice_log_summary_09-08-07_16-04-2020_109982 I am getting this error: 09:08:07 16/04/2020] –> Building de Bruijn graph… Graph…

Continue Reading Kissplice — error – AttributeError: ‘NoneType’ object has no attribute ‘returncode’

In KisSplice, I already set “ulimit -s unlimited”, but I am still getting stack limit error. Is there a work around this?

In KisSplice, I already set “ulimit -s unlimited”, but I am still getting stack limit error. Is there a work around this? 1 Objective: I am trying to use kissplice to obtain SNPs from my RNA-seq (fastq) data. Problem: Even after setting the stack limit to unlimited, I am still…

Continue Reading In KisSplice, I already set “ulimit -s unlimited”, but I am still getting stack limit error. Is there a work around this?