Tag: kubernetes

Authenticating via REST API – JupyterHub

Issue I am trying to use the hubs REST API from a custom UI and wanted to avoid using an API token and instead use the custom keycloak OAuth authenticator I have setup. Currently the authenticator works when using the provided hub UI, but I cannot figure out how to…

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Senior Development Lead – Java OpenAPI RESTful API – Page Group Hong Kong

Leadership role:- You will be responsible for supporting the system design and conducting the development to deliver the business solution for the project according to the requirements and engineering standards. He/she will perform system analysis, application development, unit testing, trouble-shooting, and operations support work. Client Details We are an forward…

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Bioinformatics phd Jobs in India, September 2022

3.8 Senior Manager -Bioinformatics Bangalore ₹350,000 – ₹627,807 (Glassdoor Est.) Understand complex research problems and design and implement bioinformatics solutions working across multiple stakeholders and customers.… 4.2 Bioinformatics Trainer/ Research Associate Noida ₹160,000 – ₹340,000 (Employer Est.) Executing biotechnology training for students. Good Knowledge of Programming Languages. Good Knowledge of…

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Setting root folder to shared folder – Zero to JupyterHub on Kubernetes

peppie August 23, 2022, 10:20am #1 I have a homemade Kubernetes Cluster with an NFS configured on each node + shared with developpers. It is used for shared storage of code and data. I configured JupyterHub using the Zero to JupyterHub tutorial with Helm chart, which is running correctly and…

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Jupyterhub on AWS EKS – Classic Load Balancer retiring – Zero to JupyterHub on Kubernetes

Per AWS blog, the classic networking model is retiring on Aug 15. As I understand it, the official Helm chart uses CLB. Is there a plan to add support for ELB in the official chart? Thanks much! manics July 8, 2022, 3:56pm #2 Z2JH uses whatever LoadBalancer is provided by…

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What are and? – Zero to JupyterHub on Kubernetes

Hello,The official Jupyterhub documentation mentions <hub_url> and<hub_ip> in the proxy settings section: jupyterhub/troubleshooting.md at 95de2618a3e021d5f78434969fd70ff10859d372 · jupyterhub/jupyterhub · GitHub. What these <hub_url> and <hub_ip> exactly are? <hub_ip> is the IP of hub service, hub pod or something else? if I use e.g. domain “my-domain com”, then <hub_url> is “my-domain com/hub”?…

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Senior Software Developer (commencing immediately) at European Molecular Biology Laboratory (EMBL)

Contract Type: Staff Member Location: EMBL-EBI, Hinxton near Cambridge, UK Job Function: Senior Technical Officer (gr. 6-8) Contract Duration-Length of Time (years/months): 1 year (until grant-end date of 30/10/2023) Contract Duration-Is this renewable to 9 years?: No Advertised Grade-Grading: Grade 6 (monthly salary starting at £3,143.06 after tax plus benefits) About the team/job We are seeking…

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Jupyter notebook not loading the correct virtual environment

We deployed Jupyterhub in Kubernetes using the helm chart , the chart version is 0.9.0 github.com/jupyterhub/zero-to-jupyterhub-k8s/tree/main/jupyterhub zero-to-jupyterhub.readthedocs.io/en/latest/jupyterhub/installation.html Users creating virtual environments using the terminal and created kernals as well, But when they accessing the jupyter notebook using the newly created kernal and run the command !conda info It is not…

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Description, Programming Languages, Similar Projects of Bioconda Recipes

Conda recipes for the bioconda channel. 4571 Projects Similar to Bioconda Recipes Sequenceserver Intuitive local web frontend for the BLAST bioinformatics tool Homebrew Bio 🍺🔬 Bioinformatics formulae for the Homebrew package manager (macOS and Linux) Galaxy Data intensive science for everyone. Travel Guide “A travel guide to suggest activities you…

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From Design-First to Automated Deployment with OpenAPI

2 hours ago Use OpenAPI to drive the functional and operational aspects of your APIs with a Design-First approach and automated deployment. Being an API-first organization is becoming a must as organizations need to build APIs to enable consumers (internal or external) to extend the functionality of their systems, share…

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How to link GCP VM disks allocated by dynamic pvc-HEXHEXHEX and `claim-username` again after irrevocably losing all kubernetes yaml? – Zero to JupyterHub on Kubernetes

TL;DR I destroyed my claim-usernames on a prod cluster deployed using current z2jh, and have a mob of nervous scientists scared they lost their data… how do I go about rebinding a hundred disk-HEXHEX GCP VM disks to the appropriate jupyterhub users? In the process of finally deploying / converting…

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Jupyter Community Forum

Sign Up Log In Log In Popular Jupyterlab on top of the hub and k8sZero to JupyterHub on Kubernetes Unable to use javascript magic functionZero to JupyterHub on Kubernetes New Jupyter Distinguished ContributorsMeta Welcome Wayne as a new forum moderatorMeta Ipywidgets 7.7.0 releasedWidgets NumFOCUS Job Boardjobs Jupyter-videochat: Video Chat with…

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Jupyterhub openshift with no S2I capability – Zero to JupyterHub on Kubernetes

Hi All I have searched lot in google but couldn’t find answer.we have openshift infrastructure available, but only limited functionalities.in that we’re not allowed to use S2I but only able to boost container via jenkins and run oc command there(jenkinsfile).problem we have now is we can’t even download jupyterhub image…

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Python JupyterHub Developer at Pachyderm

Posted on: 03/22/2022 Location: (REMOTE) full time Crunchbase | Original Source Tags: jupyter github ml typescript docker kubernetes aws javascript python **About Pachyderm** At Pachyderm, we’re building an open-source enterprise-grade data science platform that lets you deploy and manage multi-stage, language-agnostic data pipelines while maintaining complete reproducibility and provenance. If…

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Tutorial: How to Connect Jupyter Notebooks to Ocean for Apache Spark – The Spot by NetApp Blog

Jupyter Notebook is a web-based interactive computational environment for creating notebook documents. It supports programming languages – such as Python, Scala, R – and is largely used for data engineering, data analysis, machine learning, and further interactive, exploratory computing. Think of notebooks like a developer console or terminal, but with…

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CORS issues behind nginx ingress after updating to JupyterHub 2.1.1 – JupyterHub

Hi there, I noticed multiple issues after upgrading to JupyterHub 2.1.1 from 2.0.0. I stopped seeing spawn progress when starting the singleuser server. Logs: [I 2022-03-04 20:57:47.436 JupyterHub log:189] 302 GET /hub/spawn -> /hub/spawn-pending/konstantin.taletskiy@labshare.org (konstantin.taletskiy@labshare.org@192.168.15.108) 1006.02ms [I 2022-03-04 20:57:47.524 JupyterHub pages:405] konstantin.taletskiy@labshare.org is pending spawn [I 2022-03-04 20:57:47.528 JupyterHub log:189]…

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Top 50 H20 interview questions and answers

H20 interview questions and answers 1) What is AutoML in H2O? H2O’s Automatic Machine Learning (AutoML) H2O is a fully open-source, distributed in-memory machine learning platform with linear scalability. … H2O AutoML can be used for automating the machine learning workflow, which includes automatic training and tuning of many models…

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How can I connect to remote MSSQL server from jupyterHub notebook using windows authentication instead of MSSQL users? – Zero to JupyterHub on Kubernetes

I want to connect to Microsft SQL server database from jupyternotebook which is based on kubernetes z2jH installation, I made a cutome notebook image which has pyodbc & odbc inside, and could connect to MSSQL DB with sql user; however, it would be much easier to connect via Windows user…

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NetApp provides data infrastructure for EMBL

The European Molecular Biology Laboratory (EMBL) is running a data lake across two datacentre sites, based on NetApp storage, to support scientific research. Modern scientific research is heavily dependent on big data analysis and increasingly relies on artificial intelligence (AI)-based methods. EMBL’s research groups develop their own AI models,…

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V1DaemonSet – client-java-api 10.0.1 javadoc

Latest version of io.kubernetes:client-java-api javadoc.io/doc/io.kubernetes/client-java-api Current version 10.0.1 javadoc.io/doc/io.kubernetes/client-java-api/10.0.1 package-list path (used for javadoc generation -link option) javadoc.io/doc/io.kubernetes/client-java-api/10.0.1/package-list Read more here: Source link

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JupyterHub on Host Network with HTTPS failing with 503: Service Unavailable – Zero to JupyterHub on Kubernetes

Hi All, Hope everyone is well! I have been working on a small project for an internal network to get JupyterHub running. I have gotten pretty far in the development, but now stuck on getting HTTPS working with the host network option. JupyterHub is running on internal VMs and thus…

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Web Developer at European Molecular Biology Laboratory (EMBL)

About the team/job IT Services operates and supports the IT infrastructure and services at EMBL headquarters in Heidelberg and at the laboratory’s sites in Barcelona and Rome. In collaboration with the EMBL-EBI in Cambridge our team is creating and implementing a new web infrastructure for all EMBL websites. We are…

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Senior Machine Learning/Bioinformatics Software Engineer, Research – Invitae

Invitae is dedicated to bringing comprehensive genetic information into mainstream medicine to improve healthcare for billions of people. Our team is driven to make a difference for the patients we serve. We are leading the transformation of the genetics industry, by making genetic testing affordable and accessible for everyone to…

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Twist Bioscience hiring Bioinformatics Scientist, Production Bioinformatics in South San Francisco, California, United States

Twist is looking for a Bioinformatics Scientist to join our Production Bioinformatics Team. You will work alongside research scientists, software engineers and data scientists to further deliver on our mission to expand access to best-in-class synthetic biology and next-generation sequencing applications. You will be developing and engineering tools to better…

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Bioinformatics Software Engineer – jobRxiv

Inscripta was founded in 2015 and recently launched the world’s first benchtop Digital Genome Engineering platform. The company is growing aggressively, investing in its leadership, team, and technology with a recent $150mm financing round led by Fidelity and TRowe price. The company’s advanced CRISPR-based platform, consisting of an instrument, reagents, and…

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Bioinformatics Software Engineer, Cancer Genomics Research Laboratory (req2036) job with Frederick National Laboratory

PROGRAM DESCRIPTION We are seeking an enthusiastic, creative, and collaborative bioinformatics software engineer to support pipeline development and analysis for our broad portfolio of genomic studies. If you have experience designing and deploying robust, reproducible, production-quality pipelines, then come join our talented team of bioinformaticians dedicated to understanding the genetics…

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