Tag: label_format

A Bioconductor workflow for processing, evaluating,…

Introduction Proteins are responsible for carrying out a multitude of biological tasks, implementing cellular functionality and determining phenotype. Mass spectrometry (MS)-based expression proteomics allows protein abundance to be quantified and compared between samples. In turn, differential protein abundance can be used to explore how biological systems respond to a perturbation….

Continue Reading A Bioconductor workflow for processing, evaluating,…

Dot Plot using KEGG

Dot Plot using KEGG 2 Hi, I´m trying to do a dotplot using data from KEGG. I have my data represented, but I don´t want the species name in the X axis. My comand is: kegg_gene_list = sort(kegg_gene_list, decreasing = TRUE) kegg_gene_list = sort(kegg_gene_list, decreasing = TRUE) kegg_organism = “mmu”…

Continue Reading Dot Plot using KEGG

Emapplot Pie Graphic Legend Interferes with Map

Emapplot Pie Graphic Legend Interferes with Map 0 Enrichment Map using emapplot Below is my code to populate the plot. I have tried various ways to remove or make the pie legend (bottom left corner) smaller…to no avail. I appreciate any help with this issue. IBU_REACTForm_res <- pairwise_termsim(IBU_REACTForm_res) par(mar =…

Continue Reading Emapplot Pie Graphic Legend Interferes with Map

Error in UseMethod(“rescale”)

Error in UseMethod(“rescale”) 0 @2528ae94 Last seen 17 hours ago United States While using cnetplot to plot enrichGo results, I am getting the following error. It used to work before, but now I am constantly getting this error. I am using clusterprofiler package gse <- enrichGO(gene = deGenes, ont =…

Continue Reading Error in UseMethod(“rescale”)