Tag: LaTeX

2024 Ggplot axis labels

Plot Titles, Axes and Legend Titles. One way to modify plot titles, axes and legend titles is through the labs() function in ggplot2.In order to add math notation to those labels, we can use the expression() function to specify the label text. For example, if we wanted to modify the…

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Full 16S and 23S rRNA gene-based,strain-level resolution of the microbiota of a mock bacterial microbiome using ONT nanopore sequencing

%PDF-1.5 % 367 0 obj <> endobj 501 0 obj <>stream application/pdf Full 16S and 23S rRNA gene-based,strain-level resolution of the microbiota of a mock bacterial microbiome using ONT nanopore sequencing 2024-02-08T06:26:05Z LaTeX with hyperref 2024-02-09T16:16:08-08:00 2024-02-09T16:16:08-08:00 pdfTeX-1.40.25 False This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) kpathsea version 6.3.5 uuid:78a87c92-1dd2-11b2-0a00-a90927fd5800…

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Problems rendering a quarto qmd file through jupyter in VS Code – JupyterHub

bj631 January 19, 2024, 10:45pm 1 I’m trying to preview a .qmd file using quarto with jupyter in VS Code. There is a little banner in the bottom right corner that shows up when trying to render the .qmd that says ” command ‘quarto.preview’ not found “. It is a…

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Preparing Slides of CVS-11 Virus Antigen for Detecting Rabies-Specific Antibodies

To begin, wear personal protective equipment, including eye protection, a surgical mask, and non latex gloves. Prepare 20 milliliters of mouse neuroblastoma or BHK-21 cells to a concentration of 3.0 times 10 to the fifth cells per milliliter in EGM. Keep the prepared cells cold until they are ready to…

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Diagnostic efficacy of mNGS in spinal infection patients

Introduction Spinal infection, an uncommon condition, was first recorded in 1779.1 When the intervertebral disk is infected, it is commonly referred to as spondylodiscitis,2 whereas infection of the vertebral body or endplates is more precisely termed vertebral osteomyelitis or spondylitis.3 The definitive diagnosis of spinal infection is often delayed by…

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Sage 10.2.rc2 released

On Mon, Nov 13, 2023 at 1:30 PM David Coudert <david….@gmail.com> wrote: > Yesterday I have synchronized my fork on GitHub with 10.2.rc2 and it went well, but today I see that « This branch is 1 commit ahead, 1 commit behind sagemath:develop » O_o. See github.com/dcoudert/sage/ > It seems that I…

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The unlikely extremophiles lurking in your kitchen

  “CAN I ask what all this is for?” The pharmacy assistant is eyeing me suspiciously. I have just asked for some covid tests, urine sample pots and sterile scalpel blades. Oh, and some latex gloves, please. “I want to see if there are extreme life forms hiding in my…

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How to use RStudio

Article Summary Box Customizing the RStudio Environment significantly boosts productivity, with options like project-specific settings and theme personalization enhancing the user experience. Advanced ggplot2 Techniques in data visualization offer a blend of aesthetics and functionality, enabling the creation of visually striking and informative plots. Efficient Data Management strategies in RStudio,…

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sagemath crashes on start (output in messagem body)

Package: sagemathVersion: 9.5-6Severity: importantFile: /usr/bin/sage Dear Maintainer, I can’t start sage on console. Starting it, I get the following: $ sage┌────────────────────────────────────────────────────────────────────┐│ SageMath version 9.5, Release Date: 2022-01-30 ││ Using Python 3.11.6. Type “help()” for help. │└────────────────────────────────────────────────────────────────────┘ Error in sys.excepthook:Traceback (most recent call last):File “/usr/lib/python3.11/pathlib.py”, line 1251, in is_dirreturn S_ISDIR(self.stat().st_mode)^^^^^^^^^AttributeError: ‘str’…

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Fine-tuned AlphaFold for Precise MHC-Peptide Complex Prediction

%PDF-1.5 % 48 0 obj <> endobj 324 0 obj <>stream application/pdf MHC-Fine: Fine-tuned AlphaFold for Precise MHC-Peptide Complex Prediction 2023-11-29T23:31:03Z LaTeX with hyperref 2023-12-02T10:15:33-08:00 2023-12-02T10:15:33-08:00 pdfTeX-1.40.25 False This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) kpathsea version 6.3.5 uuid:29cb78a7-1dd2-11b2-0a00-4008271d5700 uuid:29cb78ab-1dd2-11b2-0a00-bf0000000000 endstream endobj 49 0 obj <> endobj 51 0 obj…

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The Rauvolfia tetraphylla genome suggests multiple distinct biosynthetic routes for yohimbane monoterpene indole alkaloids

Genome sequencing and assembly of R. tetraphylla After DNA extraction from young leaves and sequencing, the R. tetraphylla genome was first assembled into 1008 contigs with an N50 of 3.7 Mb. After haplotigs removal and a final pilon polishing, the 364,945,498 bp final assembly was distributed across 76 scaffolds with an N50…

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r – least squares regression with Rstudio

So, your goal is to estimate only the parameters � a and FM FM in the regression model. The simplified regression model focuses only on these two parameters: tan(δ) = (a*ΔF/(2F1+FM+ΔF)) Your data table contains observations for δ,F1, and DF. Using these observations, you want to estimate the optimal values…

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r – ggplot: plot a simple function without using a dataframe and add latex point labels

I am trying to add labels to each point in a simple plot in R. I can do it via the plot function. The code below works and achieves what I want to a point. library(ggplot2) library(latex2exp) i = 20 j = 200 x1 = seq(i, j, 40) y1 =…

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Highlight LateX Code Math Environment within R Studio using Sweave and .RNW File

When creating a pdf involving LateX and R code in Rstudio, is it possible to have LaTeX code highlighted whenever a math environment is created? I am frequently having errors from unmatched $ symbols and the debugger doesn’t make them easy to find. I would like the appearance of the…

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Highlight LateX Code Math Cnvironment within R Studio using Sweave and .RNW File

When creating a pdf involving LateX and R code in Rstudio, is it possible to have LaTeX code highlighted whenever a math environment is created? I am frequently having errors from unmatched $ symbols and the debugger doesn’t make them easy to find. I would like the appearance of the…

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RStudio highlight for LaTeX code – RStudio IDE

Hello everyone, I recently start using Quarto and R markdown intensively to write some latex math equations.However, I found that in both qmd and rmd doc, R studio does not highlight any latex code in the math environment. This makes it hard to write multiple equations in the same $$…$$…

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L1, L2 and Elastic Net Regularization with PyTorch | by Francesco Franco | Nov, 2023

Training a neural network means that you will need to strike a balance between optimization and over-optimization. Over optimized models work very well on your training set, but due to their complexity- by taking the oddities within a training dataset as part of the mapping that is to be performed-…

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RMRDC: RRIN seeking partnership on development of rubber

Rubber Research Institute of Nigeria (RRIN) has approached the Raw Materials Research and Development Council (RMRDC) to collaborate to shorten the gestation of rubber tree through the technology of genomic reengineering, using the CRISPR/CAS9. According to the Executive Director RRIN Dr. (Mrs) Lelia Dongo said the technology is used to…

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r – How to set Sumatra as default PDF Viewer in RStudio

I want to use Sumatra for viewing Latex Dokuments I make with R because the default R PDF Viewer opens a Sidebar everytime I recompile. So far I installed Sumatra and used the following code as described at search.r-project.org/CRAN/refmans/berryFunctions/html/sumatraInitialize.html sumatraInitialize( path = sub(“pandoc$”, “sumatra”, Sys.getenv(“RSTUDIO_PANDOC”)), roampath = paste0(Sys.getenv(“APPDATA”), “/SumatraPDF”), openfolder…

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Balloon Tag Assembly and Attachment to Sensor Fish Caps

To begin the balloon tag assembly, carefully insert the piercing tool into the silicone stopper. Then insert the piercing tool attached to the stopper into a 15 gauge syringe needle. After that, remove the piercing tool from the silicone stopper leaving only the needle embedded in the stopper. Cut a…

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r – Objects not being stored in RStudio Global Environment

If the question is actually a statistical topic disguised as a coding question, then OP should edit the question to clarify this. After the statistical content has been clarified, the question is eligible for reopening. I am a fairly new R user. Until yesterday any time I created an object…

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r – TinyTex from RStudio Rmarkdown knitting to pdf. “Approximately” sign in ggplot annotate throws error – TeX

Reproducible example: require(ggplot2) myggplot <- ggplot(data.frame(x=1:2, y=1:2), aes(x=x,y=y)) + geom_point() z <- 16.9 myggplot <- myggplot + annotate(geom=”text”, x= 1.5, y=1.5, hjust = 0, vjust = -1, label= paste(“p ≈ “,z, ” (Log-rank)”), color=”black”, size = 5) myggplot The plot, including the ≈ sign renders perfectly in RStudio and also…

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How to Install DataSpell on Linux: A Comprehensive Guide

With the boom of AI and data science, there’s a rise in the need for data scientists and machine learning engineers as well. Those engineers and developers need tools like an IDE to write their code and train models. A specialized IDE can enhance their workflow and improve their efficiency….

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B.1 knitr | bookdown: Authoring Books and Technical Documents with R Markdown

knitr The knitr package was designed based on the idea of “Literate Programming” (Knuth 1984), which allows you to intermingle program code with text in a source document. When knitr compiles a document, the program code (in code chunks) will be extracted and executed, and the program output will be…

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Dheeraj Mohandas Pai’s Resume

Dheeraj Mohandas Pai’s Resume Email: dheerajpai@cmu.edu | Phone: +1 (412)-909-7045 Address: Carnegie Mellon University, 5000 Forbes Avenue, Pittsburgh Website: dheerajpai.github.io Education Carnegie Mellon University (Aug 2022 – Dec 2023)Masters, Artificial Intelligence | Pittsburgh, PA Indian Institute of Technology Madras (Aug 2019)Bachelors, Electrical and Computer Engineering | Chennai, India Experience Qualcomm…

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Lab 01 – New Users Tour – Lab 01 – New User’s Tour To take the tour, click in each executable cell,

Lab 01 – New User&#039;s Tour To take the tour, click in each executable cell, the ones with beside them, type the appropriate code, and execute the cell. You execute a cell by pressing. Note that simply pressing will go to the next line in the executable cell and will…

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pytorch – PlotNeuralNet plot interpretation

I am new to machine learning, I know how to build a simple neural network, but I don’t know how to visualize my model accurately. PlotNeuralNet is really an amazing LaTeX package, however, I don’t quite understand the notations of the examples. Taking this plot as an example: If we…

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Tutorial 1 – ECOM30002 Econometrics 2, S1 2023 Tutorial 1 Questions Part A. (To be completed

ECOM30002 Econometrics 2, S1 2023 Tutorial 1  Questions Part A. (To be completed before the tutorial) 1. The software that we will use throughout this course is R. R is a free programme for statistical computing that is supported by a huge library of downloadable packages. Install the current…

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ggplot latex issues for R Shiny apps when published – shinyapps.io

Hi — I’ve been running into issues with Latex in my ggplots for Shiny apps when they are published. Locally, the Latex compiles fine, but when I publish the app, the Latex is incorrect. Specifically, anytime there is a sort of “container” (e.g., a tilde or bar) over a Latex…

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pdflatex – How do I get two columns in part of my PDF document created from Quarto + Latex when working in RStudio?

I believe this is a feature that is not supported natively by Quarto syntax yet, so we will have to revert to using LaTeX syntax to achieve this goal. I’d recommend this as a good start to understanding multiple column layouts in LaTeX. We will need the additional multicol LaTeX…

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Distantly related Alteromonas bacteriophages share tail fibers exhibiting properties of transient chaperone caps

de Jonge, P. A., Nobrega, F. L., Brouns, S. J. J. & Dutilh, B. E. Molecular and evolutionary determinants of bacteriophage host range. Trends Microbiol. 27, 51–63 (2019). Article  PubMed  Google Scholar  Cambillau, C. Bacteriophage module reshuffling results in adaptive host range as exemplified by the baseplate model of listerial…

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image – How to install `titling` package via RStudio?

I need to knit an rmarkdown document in pdf format, which would contain an image on top of the title. Reading on it at bookdown.org/yihui/rmarkdown-cookbook/latex-logo.html and some other answers here on how to do this, it seems I need to use the titling package ,that I do not seem to…

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Global Beauty and Personal Care Market Size to Reach USD

Vancouver, Oct. 11, 2023 (GLOBE NEWSWIRE) — Global Beauty and Personal Care Market Size to Reach USD 5,373.09 Billion in 2032 | Emergen Research Rising demand to blend beauty and wellness with the rapid adoption of cosmetics is a major factor driving beauty and personal care market revenue growth. The…

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kableextra – issue in rstudio when using kablextra package. One column in multiple tables not adhering to the same postition = “center” command

I am producing a report using an rmarkdown file. There are multiple tables being produced and multiple reports. I am encountering weird formatting inconsistencies and I am not sure if I just cannot see them because I have been looking at it to long or if there is something else…

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processing time (pj), the minimal amount of time needed to complete the job, release (r), the earliest moment the job is ready for processing, and job size (qi). For the machines to process, jobs can be grouped together. The jobs in the batch with the most recent releases and longest processing times respectively represent the batch’s available time and processing time. The size of the allotted batch cannot be greater than this amount because each machine has a maximum capacity of Lj. 1. Model the problem as MILP such that the maximum of the completion times of the last function. 2. Implement the MILP model using the program SageMath and using the table given below. Please write comments in your code to help understand it. 3. Solve the model for n = 4, 6, 8, and 10 jobs (consider the first 4, 6, 8, or 10 jobs) and 2 machines, and represent the computational time regarding the instance size in a plot. Use the following data with L0 = 30 and L1 = 45. Job 0 1 7 2 3 4 5 14 6 3 7 8 6 Ti 12 4 9 2 0 9 18 PJ 9 14 5 11 12 6 7 4 9 8 1b 16 25 19 11 13 10 18 22 12 15

Step 1/6 Step 1: Model the problem as MILP such that the maximum of the completion times of the last function. To model the problem as a Mixed Integer Linear Programming (MILP) problem, we need to define decision variables, objective function, and constraints. Decision Variables: Let’s define the decision variables:…

Continue Reading processing time (pj), the minimal amount of time needed to complete the job, release (r), the earliest moment the job is ready for processing, and job size (qi). For the machines to process, jobs can be grouped together. The jobs in the batch with the most recent releases and longest processing times respectively represent the batch’s available time and processing time. The size of the allotted batch cannot be greater than this amount because each machine has a maximum capacity of Lj. 1. Model the problem as MILP such that the maximum of the completion times of the last function. 2. Implement the MILP model using the program SageMath and using the table given below. Please write comments in your code to help understand it. 3. Solve the model for n = 4, 6, 8, and 10 jobs (consider the first 4, 6, 8, or 10 jobs) and 2 machines, and represent the computational time regarding the instance size in a plot. Use the following data with L0 = 30 and L1 = 45. Job 0 1 7 2 3 4 5 14 6 3 7 8 6 Ti 12 4 9 2 0 9 18 PJ 9 14 5 11 12 6 7 4 9 8 1b 16 25 19 11 13 10 18 22 12 15

r – Why doesn’t latex style knitr::kable show up in Rstudio?

I am trying to preview my table in a .Rmd in RStudio and would like to use the latex style but the output is a blank box whenever I set the style as “latex”. It appears in the pdf once knit. blank box shown where table should be form_o3 <-…

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RStudio IDE and Posit Workbench 2023.09.0: What’s New

This post highlights some of the improvements in the latest RStudio IDE release 2023.09.0, code-named “Desert Sunflower”. You can find more details in the Release Notes.   RStudio improvements   Preview support for GitHub Copilot   RStudio 2023.09.0 now includes an optional GitHub Copilot integration, closing issue #10148, which was…

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Establishment and Performance Evaluation of Multiplex PCR-Dipstick DNA Chromatography for Mycoplasma pneumoniae and Chlamydia pneumoniae Rapid Detection

Background and Objective. Mycoplasma pneumoniae (MP) and Chlamydia pneumoniae (CP) infections are becoming increasingly prominent in respiratory infections. This study established a rapid, simple, sensitive, accurate multiplex PCR-dipstick DNA chromatography assay for Mycoplasma pneumoniae and Chlamydia pneumoniae detection. Methods. Nasopharyngeal swab samples of 300 children with an acute respiratory tract…

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Just adding the full trace that sage produces

Package: sagemath Version: 9.5-6 Followup-For: Bug #1052051 X-Debbugs-Cc: jordi.burguet.cast…@gmail.com Dear Maintainer, When running sage, there is an ImportError related to libsingular- Singular-4.3.1.so (full trace below). From what I can see, python3-sage depends on libsingular4m3n0: $ apt depends python3-sage | grep libsingular Depends: libsingular4m3n0 (>= 1:4.3.1-p3+ds) Depends: libsingular4-dev (>= 1:4.2.1-p2+ds-3) but…

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r – Adding a maths notation for matrix in ggplot

To include some LaTeX code to a R graphic, use the tikzDevice package. Here is an example. I did a function to use tikzDevice more conveniently. library(tikzDevice) #’ @title Function to use ‘tikzDevice’ #’ @param fplot a function without argument which generates a graphic #’ @param filename filename without extension…

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Sagemath 9.5-6 expects libsingular-Singular-4.3.1.so but libsingular-Singular-4.3.2.so is installed

Package: sagemath Version: 9.5-6 Severity: normal Dear Maintainer, * What led up to the situation? Typing “sage” and pressing Enter * What was the outcome of this action? Sagemath did not start * What outcome did you expect instead? Sagemath should start *** End of the template – remove these template lines *** …

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Bioinformatics Market Size, Share, Reliable Business Data Analysis and Forecast by 2031

The latest report published by Report Ocean, titled “Bioinformatics Market “: Global Industry Trends, Share, Size, Growth, Opportunity, and Forecast 2023 to 2031,” offers a comprehensive assessment of the industry, including valuable insights into market trends. The report encompasses competitor and regional analysis, as well as the latest developments in…

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Top 5 Rarely Known Python Libraries for Advanced Development

This list highlights five rarely known Python libraries that offer advanced functionalities for various domains. From machine learning with PyTorch and network analysis with NetworkX, to natural language processing with Gensim and SpaCy, and interactive visualization with Bokeh, these libraries provide unique and powerful tools for developers and researchers looking…

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Geographically Biased Composition of NetMHCpan Training Datasets and Evaluation of MHC-Peptide Binding Prediction Accuracy on Novel Alleles

%PDF-1.5 % 363 0 obj <> endobj 551 0 obj <>stream application/pdf Geographically Biased Composition of NetMHCpan Training Datasets and Evaluation of MHC-Peptide Binding Prediction Accuracy on Novel Alleles 2023-09-03T15:23:34Z LaTeX with hyperref 2023-09-06T20:36:11-07:00 2023-09-06T20:36:11-07:00 pdfTeX-1.40.24 False This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022) kpathsea version 6.3.4 uuid:eeac1a1e-1dd1-11b2-0a00-b808276d7200 uuid:eeac1a20-1dd1-11b2-0a00-b80000000000 endstream…

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crash on startup due to a python error

Package: sagemathVersion: 9.5-6Severity: important Dear Maintainer, I cannot start sage on my computer. Simply running ‘sage’ in console leads tothe following errors: ┌────────────────────────────────────────────────────────────────────┐│ SageMath version 9.5, Release Date: 2022-01-30 ││ Using Python 3.11.5. Type “help()” for help. │└────────────────────────────────────────────────────────────────────┘Error in sys.excepthook:Traceback (most recent call last):File “/usr/lib/python3.11/pathlib.py”, line 1251, in is_dirreturn S_ISDIR(self.stat().st_mode)^^^^^^^^^AttributeError:…

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Knitting Issues | R Guide

Apple M1/M2 As of August 2023, it seems that there is no version of RStudio built for Apple Silicon Macs (M1/M2). To follow the progress and read some background you might want to check out this blog. In the meantime, it should work fine to use an Intel-based version of…

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Predicting RNA-seq coverage from DNA sequence as a unifying model of gene regulation

%PDF-1.5 % 454 0 obj <> endobj 638 0 obj <>stream application/pdf Predicting RNA-seq coverage from DNA sequence as a unifying model of gene regulation 2023-08-30T17:47:43Z LaTeX with hyperref 2023-09-02T10:05:47-07:00 2023-09-02T10:05:47-07:00 pdfTeX-1.40.24 False This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022) kpathsea version 6.3.4 uuid:01496bac-1dd2-11b2-0a00-f808277d8900 uuid:01496bb2-1dd2-11b2-0a00-d30000000000 endstream endobj 455 0 obj…

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bell auditorium covid rules

The MyPillow Guy’s Latest Scheme Just Went Bust. Its an excellent ornamental item for your home! Admissions, technology, The 2009 Richard Prescott Sifton Jr. (born May 7, 1974) [1] [2] is an American politician and lawyer who was a member of the Missouri Senate for the 1st district from 2013…

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Publish and Share with Quarto :: Cheatsheet

Overview Author: Write and code in plain text. Author documents as .qmd files, or Jupyter notebooks. Write in a rich Markdown syntax. Render: Generate documents, presentations and more. Produce HTML, PDF, MS Word, reveal.js, MS Powerpoint, Beamer, websites, blogs, books… Share: Share your work with the world. Quickly deploy to…

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Meningococcal reference unit: user manual

Executive summary This document contains information on reference services for: Neisseria meningitidis (meningococcal) isolate characterisation Capsular polysaccharide antigen detection (serogrouping) Porin B (PorB) serotyping Porin A (PorA) serosubtyping Antimicrobial susceptibility testing meningococcal (and Streptococcus pneumoniae) DNA detection and meningococcal capsular grouping by real-time polymerase chain reaction (PCR) meningococcal serology including…

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Troubleshooting Matplotlib in Rmarkdown/RStudio: LaTeX Call on $ Fails with Anaconda

Data scientists often encounter a variety of challenges when working with different programming languages and tools. One such issue is when Matplotlib in Rmarkdown/RStudio fails when calling LaTeX on $ with Anaconda. This blog post aims to provide a guide to troubleshoot this issue. Data scientists often encounter a variety…

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Is there a command line tool that can take an alignment fasta and input and outputs an image?

Is there a command line tool that can take an alignment fasta and input and outputs an image? 1 Hello! I’ve been trying to find a software that does what the post title describes, but without luck. I tried installing JalView but it won’t install for some reason “Installer User…

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Growth Opportunities, Future Insights, Regional Segments, Latest Innovations and Share Forecast by 2030

PRESS RELEASE Published July 11, 2023 Some of the Manufactures in the global Drug Discovery Software market include- DSG Drug Safety, Compound Assist, DrugPatentWatch, CCD Vault, AtomWise, AutoDock, Thermo Scientific, PEPID PDC, InSilicoTrials, MicroTracker, Epocrates, DrugDev Spark which contains detailed TOC, Fact and Figures, report spread over 105 pages. The…

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Sage Docker images are outdated: still on Sage 9.7

On Mon, Jun 19, 2023 at 1:19 PM William Stein <wst…@gmail.com> wrote: > > On Mon, Jun 19, 2023 at 11:58 AM Beth Claire <318…@gmail.com> wrote: > > > > The docker image available here: > > hub.docker.com/r/sagemath/sagemath > > Has not been updated since Sagemath 9.7. Is that image supported by…

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Bug#1040740: sagemath: three.js plots not shown

Package: sagemath Version: 9.5-6 Severity: normal Dear Maintainer, In trying to plot any 3D surface using sagemath and the default 3D viewer (three.js) the HTML plot page is generated and a new browser tab is opened however no plot is shown. The three.js tab does have a menu icon that works, also the…

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julia – Rstudio using CallJulia package issues

”I’m new in all this” I had install in Rstudio the packages needed for Julia, i.e (JuliaCall), in Julia terminal I had install also other package called – using Pkg Pkg.add(“RCall”) when I try to run my Rstudio with the code there is a message saying the following: Error in…

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ggplot2 – How to get survival table in R?

This question concerns survival data i.e. a triple that is (enter, exit, event). My data is structured such that for each individual id, I can have event = 1 only once. I want to generate a survival table which shows for any given age, how many individuals have experienced the…

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R Markdown: The Definitive Guide | RStudio Tutorial – A Complete Guide for Novice Learners!

Tip: This register has been published on Chapman & Hall/CRC. The online version of this book is free to read go (thanks to Chapman & Hall/CRC), furthermore licensed under the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. The document format “R Markdown” was firstly introduced in the knitr package (Xie 2015,…

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JetBrains DataSpell 2023.1.3 – SoftArchive

JetBrains DataSpell is an IDE for data science with intelligent Jupyter notebooks, interactive Python scripts, and lots of other built-in tools. Intelligent Jupyter notebooksTuned for high interactivitySwitch between command and editor modes with a single keystroke. Navigate over cells with arrow keys. Use all of the standard Jupyter shortcuts. Enjoy…

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Error in markdown when I try to knit ggplot2 output in PDF – R Markdown

PiRockLingustic: aes(x=M, y=ADAS11, group=RID, colour=factor(RID)) + Assuming that M and ADAS11 are continuous and RID is discrete and that the same subset of DD is plot-able in an ide session, the reason lies in the toolchain being used for rendering to pdf. If our version is the same, the trouble…

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Inhalable CAR-T cell-derived exosomes as paclitaxel carriers for treating lung cancer | Journal of Translational Medicine

Cells and plasmids HEK 293 T and LLC cells (ATCC) were cultured in Dulbecco’s Modified Eagle’s Medium (DMEM, Thermo Fisher Scientific) containing 10% FBS (Gibco, USA) and 1% penicillin–streptomycin (Invitrogen) at 37 °C in a 5% CO2 environment. Stbl3 and DH5α competent cells were used for plasmid transformation. The pCDH-CMV-MCS-EF1-GFP-Puro vector (cat….

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Bug#1037222: sagemath: Cannot install packages

Package: sagemathVersion: 9.5-6Severity: importantX-Debbugs-Cc: fuzz…@gmail.com Dear Maintainer, On sid/bookworm, package sagemath 9.5-6 does not admit package installs. For instance all of sage -pip install snappysage -pip install –user snappysudo sage -pip install snappysudo sage -pip install –user snappysage-python -m pip install –user asttokenssudo sage-python -m pip install –user asttokens, and…

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We do Data Science, Big Data, Statistics, RStudio, Python, SPSS | Classes & Lessons | City of Toronto

We are a team of experts offering top-quality assignment writing services in the fields of Artificial Intelligence, Machine Learning, Data Science, Big Data, and Statistics. We have in-depth knowledge and experience in the following areas: AI: ✅ Natural Language Processing ✅ Computer Vision ✅ Robotics ✅ Deep Learning ✅ Neural…

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Comparison of 16S rRNA Gene Quantification with Selected Inflammatory Markers and Culture Method in Septic Arthritis

Distinguishing SA from other inflammatory joint conditions is based on clinical and routine laboratory investigations representing a diagnostic challenge.4 The SF volume in normal joints varies from a few drops in small joints to several millilitres in larger joints. SF volume in the normal knee joint is from 0.2 to…

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How To Deploy Jupyter Notebook Online

Discover multiple options for deploying Jupyter notebooks online, including Saturn Cloud, JupyterHub, Binder, CoCalc, and cloud providers like AWS, Azure, and GCP As a data scientist, you may have encountered situations where you need to share your Jupyter notebooks with colleagues or clients who are not familiar with the platform….

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Auburn University Libraries offering Savvy Researcher Boot Camp

Auburn University Libraries will hold its Savvy Researcher Boot Camp over Zoom on June 3 from 9 a.m. – 3:45 p.m. The daylong event is designed for graduate students who want to take their research skills to a higher level. Whether students are interested in learning how to locate scholarly…

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A deep learning interactive tool for alignment-free clustering of DNA sequences

%PDF-1.5 % 97 0 obj <> endobj 241 0 obj <>stream application/pdf iDeLUCS: A deep learning interactive tool for alignment-free clustering of DNA sequences 2023-05-17T19:34:28Z LaTeX with hyperref 2023-05-21T15:02:58-07:00 2023-05-21T15:02:58-07:00 pdfTeX-1.40.24 False This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022) kpathsea version 6.3.4 uuid:353927b6-1dd2-11b2-0a00-7409275dc400 uuid:353927b9-1dd2-11b2-0a00-810000000000 endstream endobj 98 0 obj <>…

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Download JetBrains DataSpell 2023.1.2 – SoftArchive

JetBrains DataSpell is an IDE for data science with intelligent Jupyter notebooks, interactive Python scripts, and lots of other built-in tools. Intelligent Jupyter notebooksTuned for high interactivitySwitch between command and editor modes with a single keystroke. Navigate over cells with arrow keys. Use all of the standard Jupyter shortcuts. Enjoy…

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How to substitute unevaluated expression in SageMath?

I have an expression x*y. I want to convert it to latex, while substituting numbers instead of variables. So if I want to substitute 10 instead of x and 20 instead of y, I would do: latex((x*y).subs(x=10,y=20)) 200 Now the code above returns 200, so it evaluates 10*20. But I…

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4 R Markdown | Getting Used to R, RStudio, and R Markdown

R Markdown provides an easy way to produce rich, fully-documented, reproducible analyses. It allows users to share a single print containing all of the comments, R code, and metadata needed to reproduce the analysis from beginning to end. R Markdown allows you to combine chunks of R control with Markdown…

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r – How can I draw a flow chart in ggplot2?

At this stage I don’t think it’s possible to add text next to the arrows within the ggflowchart package, maybe DiagrammeR is an alternative option for that. To enable horizontal flow, just use horizontal = TRUE. Use annotate to place custom labels onto the ggplot (note the “labels” on the…

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Accelerating AI Development with Jupyter Notebook

Accelerating AI Development with Jupyter Notebook Artificial intelligence (AI) is transforming the world in unprecedented ways. But developing AI solutions can be challenging and time-consuming. How can you speed up your AI development process and unleash your creativity? The answer is Jupyter Notebook. Jupyter Notebook is an open-source web application…

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B RStudio IDE Commands | RStudio Workbench Edition 1.4.1707-4

activateBuild Show Build activateCompilePDF Show Compile PDF activateConnections Show Connections activateConsole Move Focus to Console activateConsolePane Move Focus to Console Panel activateData Show Data activateDeployContent Show Deploy Content activateEnvironment Show Environment activateFiles Show Files activateFindInFiles Show Find in Files activateHelp Move Focus to Help activateHistory Show History activateJobs Show Jobs…

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Using Mathics and reusing its computed results

asked 2023-05-08 12:47:17 +0200 As I am curious and a former Mathematica user, I have installed mathics on my computer then I have tried the following simple code from sage.interfaces.mathics import mathics sys = mathics(‘{x^2 – 3y == 3, 2x – y == 1}’) print(sys) which works as expected (show()…

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Technical Enzymes Market Revenue Analysis, Company Revenue Share, Global Forecast till 2032

Reports And Data Technical Enzymes Market report also sheds light on supply chains and the changes in the trends of the upstream raw materials and downstream distributors. NEW YORK, NY, UNITED STATES, May 8, 2023 /EINPresswire.com/ — The global market size for technical enzymes was USD 12.1 billion in 2022…

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Malaria research: the latest biotech innovations

The bite of an infected female Anopheles mosquito abets the entry of Plasmodium sporozoites in the bloodstream of humans, marking the beginning of the parasite’s life cycle. The sporozoites then travel to the liver and multiply, following which they invade red blood cells, proliferating in numbers yet again. And in about…

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Keyboard shortcut for Latex mode – RStudio IDE

Is there a way of starting a new latex equation without selecting the menu item? For example, I want to be able to type Let $X_1,\ldots,X_n$ be an i.i.d. sample … while in visual mode (without taking my fingers off the keyboard to select a menu item). If I try…

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What are biotech companies doing to tackle malaria?

The bite of an infected female Anopheles mosquito abets the entry of Plasmodium sporozoites in the bloodstream of humans, marking the beginning of the parasite’s life cycle. The sporozoites then travel to the liver and multiply,  following which they invade red blood cells, proliferating in numbers yet again. And in…

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Covid-19 and the marvel of mRNA vaccine: Know how it works

To most people in the world, we millennials in particular, before the year 2020 the idea of pandemics seemed confined to history textbooks and to Hollywood movies. None of us could have had an inkling as to the turn our lives were about to take. Our hubris was soon checked,…

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r – File not found with knitr::include_graphics in rmarkdown via RStudio when data and pdf-image present

I use win10 system and have the following file tree C:\Users\xxx\Desktop\islr C:\Users\xxx\Desktop\islr\data\Advertising.csv C:\Users\xxx\Desktop\islr\fig\2-1.pdf I have some .csv data sets and .pdf figures from www.statlearning.com/resources-first-edition; or you can test my demo.rmd using any .csv data and .pdf figure available at hand. My demo.rmd reads as follows: — title: “TTT” author: “aaa”…

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Markdown, HTML, PlantUML, LaTeX, Diagrams, Open API, Mermaid

Extend Confluence functionality with Markdown, LateX, AsciiDoc, Open API / Swagger, and Diagram Macros. Insert Markdown, LaTex, AsciiDocs, and arbitrary HTML from inline text, Confluence Attachments, or Remote URLs Insert Open API / Swagger API Specs Insert text based Diagrams like PlantUML, GraphViz, Mermaid, and more Render Markdown from public…

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Acrylic Color Gengis Khaki Wayland Games

Acrylic paints with an opaque and smooth matt finish, specially designed for modelling and miniature painting. Curated and carefully developed by experienced artists using a new generation of pigments, the Acrylic Color range aims to provide a full spectrum of all basic tones and shades necessary for wargames, vehicles, miniatures…

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Problems with the new way to load Sagemath

One more question in form of a suggeestion. Since the new way to install Sagemath inside a container, the mechanism consisting in modifiying custom.css to change the display of the output cell is not accessible (at least for me since I do not know how to enter in the container…

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sagemath – Evaluating LaTeX input

I frequently use desmos, and when I copy equations and expressions, desmos gives these in $\LaTeX$. Is it possible for sagemath to interpret the $\LaTeX$ code and make a sagemath object of it? Say for example i have the $\LaTeX$ expression: $$\frac{ab+\sqrt{a^{2}+b^{2}-1}}{a^{2}-1}$$ Then I would like to get something I…

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Post_calculation of average stress in xx, yy and zz – LAMMPS General Discussion

Hi,everyone, i am trying to verify that my input script is right. and i do have a problem.firstly, i use the command‘’’compute 2 all pair/local dist dx dy dz force fx fy fz cutoff radius‘’’to calcute the contact force between each contact pairs. Then i used‘’’fix 9 all press/berendsen x…

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[Solved] I need support for my R Studio class. I have a file as cvs and I…

I need support for my R Studio class. I have a file as cvs and I need to make an x-y scatter plot of date on the x-axis and hind-foot length on the y-axis, with different colors for the different genera. Image transcription text 25 surveys$date = ymd(paste(surveys$year, surveys$month, surveys$day,…

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How to find this unicode character U+202F in your LaTeX documents? – TeX

If you insert the following code in the preamble (after loading inputenc), the text !!FIXME!! will appear wherever an undeclared unicode character occurred. \makeatletter \def\UTFviii@defined#1{% \ifx#1\relax !!FIXME!!% \else \expandafte‌​r#1% \fi } \makeatother (Reference: This macro is defined in utf8.def. Run texdoc utf8ienc for the package documentation. Since the package could…

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Hypoxia-induced transcriptional differences in African and Asian versus European diabetic cybrids

Human subjects Research involving human subjects was approved by the Institutional Review Board of the University of California, Irvine (#2003-3131). All enrolled patients provided written, informed consent. Clinical investigations were performed based on the ethical principles of the Declaration of Helsinki26. Cybrid generation Patient blood was collected in tubes containing…

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RStudio setup and tips. with markdown | by Nic Coxen | Mar, 2023

with markdown Photo by Michael Soledad on Unsplash RStudio is one of my favorite IDEs, and it is really quite flexible. You can really fancy things up quite a bit! I have previously added a contents tables to assignments, and added custom CSS and HTML, changed colors, different chunk options,…

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Cardinal Health report examines shifts in biosimilars industry

The report assesses new and changing perspectives regarding some of the most disruptive biosimilars launched in the last areas of ophthalmology and immunology. (Image Credit: Adobe Stock) Cardinal Health recently released its 2023 Biosimilars Report: Tracking Market Expansion and Sustainability Amidst a Shifting Industry, a publication that shines a spotlight on…

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Diffuse Large B-Cell Lymphoma (DLBCL) Therapeutics Market is Booming in Near Future 2023-2028

PRESS RELEASE Published February 26, 2023 “Diffuse Large B-Cell Lymphoma (DLBCL) Therapeutics Market” Report provides a Detailed analysis of global market size, regional and country-level market size, segmentation market growth, market share, competitive Landscape, sales analysis, Impact of domestic and global market players, Key players profiled in the report are…

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org.rstudio.studio.client.workbench.views.source.editors.text.TextEditingTargetIdleMonitor.java Source code

Introduction Here is the source code for org.rstudio.studio.client.workbench.views.source.editors.text.TextEditingTargetIdleMonitor.java Source /* * TextEditingTargetIdleMonitor.java * * Copyright (C) 2009-16 by RStudio, Inc. * * Unless you have received this program directly from RStudio pursuant * to the terms of a commercial license agreement with RStudio, then * this program is licensed to…

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B RStudio IDE Commands | RStudio Server Professional Edition 1.3.911-1

activateBuild Show Build activateConnections Show Connections activateConsole Move Focus to Console activateConsolePane Move Focus to Console activateData Show Data activateEnvironment Show Environment activateFiles Show Files activateFindInFiles Show Find in Files activateHelp Move Focus to Help activateHistory Show History activateJobs Show Jobs activateLauncherJobs Show Launcher activatePackages Show Packages activatePlots Show Plots…

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sage starts from command line but not from desktop menu

Package: sagemath Version: 9.5-6 Severity: normal X-Debbugs-Cc: jorge.m…@gmail.com Dear Maintainer, Sage fails to start from the graphical menu with “Failed to execute default Terminal Emulator” “Input/output error”. The problem is confined to the menu launcher: sage starts without problem from the command line (e.g. typing “sage -n” from the terminal emulator). —————– …

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Data Visualization Tools Market Size, Share, Growth Statistics By Top Key Players

PRESS RELEASE Published February 1, 2023 The global Data Visualization Tools market size was valued at USD 5410.03 million in 2021 and is expected to expand at a CAGR of 9.25% during the forecast period, reaching USD 9198.74 million by 2027. Final Report will add the analysis of the impact…

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sagemath package currently absent from bookworm

Successfully built Sagemath 9.6 on Bookworm (“apt dist-upgrade”-ed as of 25 January 2023) using the following script. (It seems to have partially built 9.7, and that build might be fixable by an interested someone.) The important piece seems to be ./configure –without-system-gcc –without-system-pari –without-system-singular to avoid the version conflicts reported…

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genbank sequence format

HHS Vulnerability Disclosure, Help This document is an overview of the Entrez databases, with general information on If you are not sure that the “Save” option in your program will do this for you, use “Save As”, In Excel, select “Save As” from the File menu. optimizations to reduce memory…

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Mobile resistome of microbial communities and antimicrobial residues from drinking water supply systems in Rio de Janeiro, Brazil

Ilyas, M. et al. Environmental and health impacts of industrial wastewater effluents in Pakistan: A review. Rev. Environ. Health 34, 171–186 (2019). MathSciNet  PubMed  CAS  Google Scholar  Roy, M. A. et al. A Metagenomic approach to evaluating surface water quality in Haiti. Int. J. Environ. Res. Public Health 15, 2211…

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Jupyter Sagemath Kernel With Code Examples

Jupyter Sagemath Kernel With Code Examples In this session, we are going to try to solve the Jupyter Sagemath Kernel puzzle by using the computer language. The code that follows serves as an illustration of this point. mkdir -p /usr/local/share/jupyter/kernels ln -nsf /opt/SageMath/local/share/jupyter/kernels/sagemath /usr/local/share/jupyter/kernels/sagemath The Jupyter Sagemath Kernel was solved…

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