Tag: LEfse

Practicing Meditation Leads to a Healthier Gut Microbiome

Recent medical interests have focused on the gut microbiome as the epicenter of health. Indeed, the microbiota-gut-brain axis has been proven to influence mental and physical wellbeing. Meditation, the internal mental exercise of paying attention to the present moment, can also impact one’s physical and mental health. However, there has…

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Amoxicillin and thiamphenicol treatments may influence the co-selection of resistance genes in the chicken gut microbiota

General description of sequences After the quality filtering step, removal of chimeric fragments, and read merging, a total of 3,378,323 reads with 3007 different features was obtained, with an average of 27,244 sequences per individual sample. After quality filtering, none of the samples was excluded from the analysis of microbial…

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Page Not Found – The bioBakery help forum

The bioBakery help forum Sign Up Log In Log In Popular Announcing MetaPhlAn 4MetaPhlAn Announcing HUMAnN 3.5HUMAnN Clear guidance needed for comparing across samples with varying sequencing depthMetaPhlAn List of taxa in Metaphlan4 databaseMetaPhlAn Metaphlan 4 install issueMetaPhlAn ERROR: The MetaPhlAn2 taxonomic profile provided was not generated with the database…

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Nitrogen cycling and microbial cooperation in the terrestrial subsurface

Distribution of nitrogen-cycling pathways in groundwater Differences in nitrogen-cycling processes based on oxygen and nitrate concentrations Sixteen metagenomes (Table S4) were obtained from duplicate wells at four sites (A–D) from two unconfined alluvial aquifers (Canterbury, Fig. S1). These sites encompassed varied nitrate (0.45–12.6 g/m3), DO (0.37–7.5 mg/L), and dissolved organic carbon (DOC) (0–26 g/m3)…

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