Tag: Logic

Scatter Gather principle by chromosome on Gatk

Scatter Gather principle by chromosome on Gatk 0 Hi all, On a quest to optimize gatk pipeline, I met scatter gather principle, so I did following, pids= for chr in chr1 chr2 chr3 chr4 chr5 chr6 chr7 chr8 chr9 chr10 chr11 chr12 chr13 chr14 chr15 chr16 chr17 chr18 chr19 chr20…

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Postdoctoral Researchers In Bioinformatics job in Saudi Arabia

Saudi Arabia KAUST Full time We are seeking to fill a position for a postdoctoral researchers at the Computational Bioscience Research Center at King Abdullah University of Science and Technology. The researcher will work in the Hoehndorf lab ) on developing and applying…

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Re: [PATCH 2/3] hwmon (coretemp): Add support for dynamic tjmax

Re: [PATCH 2/3] hwmon (coretemp): Add support for dynamic tjmax – Guenter Roeck From: Guenter Roeck <linux@roeck-us.net> To: Zhang Rui <rui.zhang@intel.com> Cc: jdelvare@suse.com, fenghua.yu@intel.com, linux-hwmon@vger.kernel.org, srinivas.pandruvada@linux.intel.com Subject: Re: [PATCH 2/3] hwmon (coretemp): Add support for dynamic tjmax Date: Fri, 11 Nov 2022 13:26:45 -0800 [thread overview] Message-ID: <20221111212645.GA1059539@roeck-us.net> (raw) In-Reply-To:…

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python – having problem with multi-gpu in pytorch transformer

I am currently trying to make a translation model with Trnasformer model through PyTorch. Since I have 2 GPUs (2080ti x 2) available for training, I want to train the model through multi-gpu. Currently, the gpu is assigned to 0 and 1 respectively. The way I use multi-gpu is to…

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High-Performance Computing Software Market Forecast 2022 Analysis of The Key Players, Growth Status, Business Strategies and Scope with Outlook 2030

Read Time:4 Minute, 46 Second New York (US) – Key Companies Covered in the High-Performance Computing Software Market Research are Altair Engineering, Ansys, Dassault Systemes, ESI, Gaussian, Gromacs, Livermore Software, Siemens and other key market players. The global High-Performance Computing Software Market is expected to reach US$ Million by 2027, with a CAGR of $$%…

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React & REST APIs: End-To-End TypeScript Based On OpenAPI Docs

When you work on a React & TypeScript project that fetches data from a REST API, keeping your data types in sync can be problematic. You obviously can create all the types on your frontend by hand. But this is a tedious and error-prone process. You might get a type…

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pytorch transforms resize

Example 1 torchvision.transforms.functional.resize(img: Tensor, size: List[int], interpolation: InterpolationMode = InterpolationMode.BILINEAR, max_size: Optional[int] = None, antialias: Optional[bool] = None) Tensor [source] Resize the input image to the given size. If the image is torch Tensor, it is expected to have [, H, W] shape, where . In order to script the…

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Speeding up DNA computation with liquid droplets

□ Recent studies have shown that liquid-liquid phase separation – akin to how oil droplets form in water – leads to formation of diverse types of membraneless organelles, such as stress granules and nucleoli, in living cells. These organelles, also called biomolecular condensates, are liquid droplets performing specific cellular functions…

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New Best Practices — Visual Studio Magazine

The Data Science Lab Binary Classification Using PyTorch, Part 1: New Best Practices Because machine learning with deep neural techniques has advanced quickly, our resident data scientist updates binary classification techniques and best practices based on experience over the past two years. By James McCaffrey 10/05/2022 A binary…

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A global collaboration to map the whole human brain

Baylor College of Medicine researchers in the Tolias Lab and the Xiaolong Jiang Lab are part of a global collaborative led by the Allen Institute to map the whole human brain. In what is being called the brain equivalent of the Human Genome Project, this initiative will map 200 billion cells in the human brain by…

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Population-level variation in enhancer expression identifies disease mechanisms in the human brain

Schizophrenia Working Group of the Psychiatric Genomics Consortium. Biological insights from 108 schizophrenia-associated genetic loci. Nature 511, 421–427 (2014). PubMed Central  Article  CAS  Google Scholar  Visscher, P. M. et al. 10 years of GWAS discovery: biology, function, and translation. Am. J. Hum. Genet. 101, 5–22 (2017). CAS  PubMed  PubMed Central …

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a new and efficient development model, to achieve code and API separation, efficient development, development must see!!!

什么是openapi 3.0 OpenAPI 3.0.0 是 OpenAPI The first official version of the specification,因为它是由 SmartBear Software 捐赠给 OpenAPI Initiative,并在2015年从 Swagger 规范重命名为 OpenAPI 规范. 介绍: OpenAPI 规范(OAS),is to define a standard、programming language-independentRESTful API的规范.OpenAPI Specifications enable both humans and computers to“Do not contact with any program source code and documentation、Does not monitor network…

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The Unbreakable Attraction of Mosquitoes to Humans

A female Aedes aegypti  mosquito feeds from a researcher at The Rockefeller University. Credit: © Alex Wild More than a decade ago, Leslie Vosshall, then a relatively new Howard Hughes Medical Institute (HHMI) Investigator, decided to switch from studying innocuous fruit flies to a far deadlier creature—the mosquito. Perhaps her extensive knowledge of…

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Whale detector – Python Similar Projects List

Whale detector – Python Similar Projects List Home Deep Learning MIT Whale detector – Python Similar Projects List BSD-2-Clause Kaggle humpback – Python 156 Code for 3rd place solution in Kaggle Humpback Whale Identification Challenge. kaggle-humpback-submission Code for 3rd place solution in Kaggle Humpback Whale Identification Challange. To read the…

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Electroporation Systems Market 2022 Comprehensive Analysis, Growth And Forecast to 2030 | Biotron Healthcare, Merck, Eppendorf

Key Companies Covered in the Electroporation Systems Research are Biotron Healthcare, Merck, Eppendorf, Thermo Fisher, Bio-Rad, MaxCyte, Harvard Apparatus, Biogenuix and other key market players. The Electroporation Systems market revenue was $$ Million USD in 2016, grew to $$ Million USD in 2022, and will reach $$ Million USD in…

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Challenges facing AI in science and engineering

Join executives from July 26-28 for Transform’s AI & Edge Week. Hear from top leaders discuss topics surrounding AL/ML technology, conversational AI, IVA, NLP, Edge, and more. Reserve your free pass now! One exciting possibility offered by artificial intelligence (AI) is its potential to crack some of the most difficult…

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Metagenomics Sequencing Market Size 2022 Global Industry Revenue, Business Growth, Development Strategy, Trends, Demand and Applications Market Research Report Forecast 2025

Global “Metagenomics Sequencing Market” Research Report 2022 is a historical overview and in-depth study of the current & future market of the Metagenomics Sequencing industry. The report represents a basic overview of the Metagenomics Sequencing market share, and competitor segment with a basic introduction of key players, top regions with…

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Bioinformatics Remote Jobs – Find popular part time/ full time remote Bioinformatics jobs

Explore 2 recent remote Bioinformatics jobs & apply for free. Biology Breed new fish for sportfishing Hourly – Posted at 5 hours ago $19.43Hourly Jun 20, 2022Expiry We need help creating a new species of fish to the Sportfishing industries. The fish is to be stocked & produced by a…

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Impact of sweet, umami, and bitter taste receptor (TAS1R and TAS2R) genomic and expression alterations in solid tumors on survival

Despite being best known for their role in taste sensing1, T2Rs and T1Rs have been identified in various extra-oral tissues where they serve diverse chemosensory roles17,18,19,20,21,22,48. Emerging data on the role of taste receptors in malignancy led us to explore the genetic and expression alterations for solid tumors and implications…

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How to find unique and common genus by comparing 4 different files containing genus ?

How to find unique and common genus by comparing 4 different files containing genus ? 0 HI,I have 4 files having genus names in them generated from soil meta sequencing of different agricultural fields like F1 F2 F3 F4A B A CD C F DF E G YH T Y…

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Mbedtls Application On Tcp

How to use mbedTLS library in Keil or IAR IDEs? I want to do an RSA encryption/decryption using my AT91SAM7S256 ARM MCU.After googling I found mbed TLS library. The IP networking interface includes TLSSockets which behave similarly to normal TCP sockets but automatically use Mbed TLS to set up a…

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Fix error handling in pcm030_fabric_probe

[PATCH] ASoC: fsl: Fix error handling in pcm030_fabric_probe * [PATCH] ASoC: fsl: Fix error handling in pcm030_fabric_probe @ 2022-03-01 7:53 Miaoqian Lin 2022-03-02 13:44 ` Mark Brown 0 siblings, 1 reply; 7+ messages in thread From: Miaoqian Lin @ 2022-03-01 7:53 UTC (permalink / raw) To: Liam Girdwood, Mark Brown,…

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Label-Free Resonance Rayleigh Scattering Amplification for Lipopolysaccharide Detection and Logical Circuit by CRISPR/Cas12a-Driven Guanine Nanowire Assisted Non-Cross-Linking Hybridization Chain Reaction,Analytical Chemistry

Although the CRISPR/Cas system has pioneered a new generation of analytical techniques, there remain many challenges in developing a label-free, accurate, and reliable CRISPR/Cas-based assay for reporting the levels of low abundance biomolecules in complex biological samples. Here, we reported a novel CRISPR-derived resonance Rayleigh scattering (RRS) amplification strategy and…

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How to link GCP VM disks allocated by dynamic pvc-HEXHEXHEX and `claim-username` again after irrevocably losing all kubernetes yaml? – Zero to JupyterHub on Kubernetes

TL;DR I destroyed my claim-usernames on a prod cluster deployed using current z2jh, and have a mob of nervous scientists scared they lost their data… how do I go about rebinding a hundred disk-HEXHEX GCP VM disks to the appropriate jupyterhub users? In the process of finally deploying / converting…

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ncRNA | Free Full-Text | Current Status of Epitranscriptomic Marks Affecting lncRNA Structures and Functions

Non-Coding RNA 2022, 8(2), 23; doi.org/10.3390/ncrna8020023 (registering DOI) Non-Coding RNA 2022, 8(2), 23; doi.org/10.3390/ncrna8020023 (registering DOI) Received: 1 March 2022 / Revised: 21 March 2022 / Accepted: 25 March 2022 / Published: 28 March 2022 Round 1 Reviewer 1 Report In recent years, a great process has been made in the research…

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A Comprehensive Guide on ggplot2 in R

                                                                  Image source: Author       Introduction Visualization plays an important role in the decision-making process after analyzing relevant data. Graphical representation highlighting the interdependence of key elements affecting performance is important in the above process. There are many libraries in Python and R which provide different options showing…

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How To Use Kaggle for Data Science

Kaggle is the largest platform for data scientists and machine learning experts, offering aspirants with the most hands-on experience in the complicated field of data science. Due to this, experts have high praise for the Kaggle community for its role in data scientist upskilling.  The winners of each competition post…

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dCas9-VPR-mediated transcriptional activation of functionally equivalent genes for gene therapy

1. Dunbar, C. E. et al. Gene therapy comes of age. Science 359, eaan4672 (2018). PubMed Google Scholar  2. Wang, D., Tai, P. W. L. & Gao, G. Adeno-associated virus vector as a platform for gene therapy delivery. Nat. Rev. Drug Discov. 18, 358–378 (2019). CAS PubMed PubMed Central Google Scholar  3. Eid, A.,…

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Avian mtDNA primers

Avian mtDNA Primers The PDF file below provides details on a complete set of primers for amplifying and sequencing avian mitochondrial DNA. All of the primers have been designed to work with most or all birds and most perform very well in this regard. The document is intended as a…

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Bioinformatics Specialist Job Opening in Aliso Viejo, CA at Ambry Genetics

JOB OVERVIEW: The main role of this position is project coordination, timeline management, and requirement gathering. To this end, the Bioinformatics Specialist analyzes and refines business and user requirements, and coordinates with developers to facilitate bioinformatics solutions through the entire SDLC, from discovery, design, development, and validation. The Bioinformatics Specialist…

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Using logic in listcols (ggplot2 edition)

I am trying to produce a slightly different result from a purrr::map iteration depending on a condition. Say I have this code producing plots and storing them in a dataframe: library(tidyverse) #> — Attaching packages ————————————— tidyverse 1.3.1 — #> v ggplot2 3.3.5 v purrr 0.3.4 #> v tibble 3.1.6…

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Decoding gene regulation in the fly brain

1. Li, H. et al. Classifying Drosophila olfactory projection neuron subtypes by single-cell RNA sequencing. Cell 171, 1206–1220 (2017). CAS  PubMed  PubMed Central  Google Scholar  2. Davie, K. et al. A single-cell transcriptome atlas of the aging Drosophila brain. Cell 174, 982–998 (2018). CAS  PubMed  PubMed Central  Google Scholar  3….

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okay to run docker build test only on changes to Dockerfiles ?

I’d like to see a quicker response from the CI system when we make a pull request etc. I’ve opened this issue to ask if you agree to only run the job testing the build of the Dockerfiles when we change the Dockerfiles. Would that be reasonable? If so, I’ll…

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swagger – How to integrate openapi specifications from different APIs?

This bounty has ended. Answers to this question are eligible for a +50 reputation bounty. Bounty grace period ends in 15 hours. cah1r wants to draw more attention to this question: Needing a good solution on how to solve this problem I wanted to ask if…

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Flavivirus-GLUE by giffordlabcvr

Overview The flaviviruses (family Flaviviridae) are a group of enveloped, positive-strand RNA viruses, many of which pose serious risks to human health on a global scale. Arthropod-borne flaviviruses such as Zika virus (ZIKV), Dengue virus (DENV), and yellow fever virus (YFV) are the causative agents of large-scale outbreaks that result…

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How to trim a GFF3 file based on specific coordinates?

How to trim a GFF3 file based on specific coordinates? 0 Hi, I would like to create a GFF3 file containing information only for specific coordinates from the chromosome level GFF3 file. I know how to extract gene and CDS info separately but don’t know how to do trimming based…

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