Tag: MCScanX

help for old version of MCScanX for parameter U

Dr Wang: In the early vserions of MSCanX, the parameter “u” designated the intergenetic distance (defualt value:10kb). This may be true for angiosperms, but recently, we sequenced a fern genome, and found the average genetic distance about 100kb, We have used the updated version of MCSCanX, the propotions of synteny…

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MCScanX: not found – githubmate

Hi CJ-Chen, Thanks for developing this tool. I having an issue when I try to use Quick Run MCScanX Wrapper. error log here: [Debug…All Standard Error Info will show as following:…] Curr log file:/tmp/TBtools.14595798488989250861.20210723103734.log Curr java version:11.0.11 Curr TBtools version:1.09854 Maxmum Memory for Curr TBtools: 4162846720 curVersion:1.09854:force Fetch Location:200 Factor:0.1516546094367225…

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Transitional genomes and nutritional role reversals identified for dual symbionts of adelgids (Aphidoidea: Adelgidae)

1. Szathmáry E, Smith JM. The major evolutionary transitions. Nature 1995;374:227–32. PubMed  Google Scholar  2. West SA, Fisher RM, Gardner A, Kiers ET. Major evolutionary transitions in individuality. Proc Natl Acad Sci USA. 2015;112:10112–9. CAS  PubMed  PubMed Central  Google Scholar  3. Moran NA. The coevolution of bacterial endosymbionts and phloem-feeding…

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MCScanX empty collinearity file.

MCScanX empty collinearity file. 1 Hellow, I want to check the gene duplication of a gene within Potato genome for which I am using MCScanX. ./MCScanX data/xyz OUTPUT is showing that there is no alingment generated: Reading BLAST file and pre-processing Generating BLAST list 1446 matches imported (1155 discarded) 48…

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