Tag: MetaCyc
Mendelian randomization analyses support causal relationships between blood metabolites and the gut microbiome
1. Wang, J. & Jia, H. Metagenome-wide association studies: fine-mining the microbiome. Nat. Rev. Microbiol. 14, 508–522 (2016). CAS PubMed Google Scholar 2. Moschen, A. R. et al. Lipocalin 2 protects from inflammation and tumorigenesis associated with gut microbiota alterations. Cell Host Microbe 19, 455–469 (2016). CAS PubMed Google Scholar …
Escherichia coli K-12 substr. MG1655 GO:0042781
Escherichia coli K-12 substr. MG1655 Gene-Ontology-Terms Class: GO:0042781 – 3′-tRNA processing endoribonuclease activity Synonyms: 3′ tRNA processing endoribonuclease activity, 3′ tRNase activity, tRNA 3′ endonuclease activity Definition: Catalysis of the endonucleolytic cleavage of RNA, removing extra 3′ nucleotides from tRNA precursor, generating 3′ termini of tRNAs. A 3′-hydroxy group is…
Escherichia coli K-12 substr. MG1655 EC 1.1.1.282
BioCyc ID: RXN-11174 EC Number: 1.1.1.282 Enzymes and Genes: shikimate dehydrogenase: ydiB The reaction direction shown is in accordance with the direction in which it was curated. Most BioCyc compounds have been protonated to a reference pH value of 7.3. Please see the PGDB Concepts Guide for more information. Mass…
How to map enriched pathways on whole metacyc pathway map?
How to map enriched pathways on whole metacyc pathway map? 0 Hi there!!! I have a list of control enriched and a list of case enriched microbiome pathways (metacyc). Now I want to map them on the whole MetaCyc map to get the the enriched pathways on the whole network….
kegg pathway database
Pathways that include all genes in gene_ids. Here the KEGG API operations are explained in comparison to these web tools. MODULE — modules or functional units of genes, BRITE — hierarchical classifications of biological entities, This page was last edited on 22 October 2020, at 18:43. The list can be…
How to retrieve KO IDs for a list of genes?
How to retrieve KO IDs for a list of genes? 2 Hi, community!!! I have downloaded a list of genes from the MetaCyc database for some bacterial species. I want to find out their respective KO IDs. Can anyone please tell me how can I do that? Thanks KEGG database…
