Tag: MG-rast
Application of High-Throughput Sequencing (HTS) to Enhance the Well-Being of an Endangered Species (Malayan Tapir): Characterization of Gut Microbiome Using MG-RAST
The Tapirus indicus, also known as Malayan tapir, has been listed as a rapidly declining animal species in the past decades, along with being declared and categorized as an endangered species by the International Union for Conservation of Nature (IUCN) 2016. This tapir species is geographically distributed across several countries…
Comparative resistome, virulome and mobilome analysis of metagenomes from wild and farm animals
Resumo: Although (in the context of bacterial infections) the goal of antibiotic use is to combat and eliminate pathogenic bacteria, hundreds of non-pathogenic bacterial species are also affected when antibiotics are administrated. This results in a selection of bacteria resistant to the class of antibiotic applied. Additionally, with the ability…
Mobile resistome of microbial communities and antimicrobial residues from drinking water supply systems in Rio de Janeiro, Brazil
Ilyas, M. et al. Environmental and health impacts of industrial wastewater effluents in Pakistan: A review. Rev. Environ. Health 34, 171–186 (2019). MathSciNet PubMed CAS Google Scholar Roy, M. A. et al. A Metagenomic approach to evaluating surface water quality in Haiti. Int. J. Environ. Res. Public Health 15, 2211…
MG-RAST abundance values and filtering with SEEDs subsystem issue metagenome
Hi, I am working with annotating my metagenomes through the MG-RAST pipeline, annotating them with taxonomy and function. For this study we are interested in understanding phosphorus metabolism. To summarise, MG-RAST has a filtering option where you can filter by different levels in subsystems or refseq. When I use the…
File No. of MG-RAST
File No. of MG-RAST 0 Does anyone know what kind of data ‘File 299.1’ in MG-RAST? While I was downloading raw data by specifying ‘File 050.1’, some came out with error {“ERROR”:”requested file (050.1) is suppressed; try file=299.1″} Can’t find out what kind of data 299.1 would be. MG-RAST Metagenome…
CD Genomics Perspective: Bioinformatic Analysis for Microbial Metagenomics
Introduction to Bioinformatics for Microbial Metagenomics In microbial ecology, metagenomic techniques are now widely utilized to research microbial communities in greater depth, including many strains that cannot be produced in the lab. Microbial bioinformatics may now be used to mine large metagenomic datasets for broad patterns that govern microbial communities….
Metagenomics survey of major metabolic network of sunflower microbiota
Abstract The microbial communities inhabiting the root, termed the rhizosphere, are in a symbiotic association with their host. However, the plant-microbe interaction study at its current stage is still an evolving field of science. Though still largely unexplored, the soil consists of a metabolically active microbiome where microorganisms are abundant….
