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Tag: MSMC
Global genetic diversity, introgression, and evolutionary adaptation of indicine cattle revealed by whole genome sequencing
Loftus, R. T., MacHugh, D. E., Bradley, D. G., Sharp, P. M. & Cunningham, P. Evidence for two independent domestications of cattle. Proc. Natl Acad. Sci. USA 91, 2757–2761 (1994). Article ADS CAS PubMed PubMed Central Google Scholar Verdugo Marta, P. et al. Ancient cattle genomics, origins, and rapid turnover…
MSMC2 doesn’t generate final.txt file
MSMC2 doesn’t generate final.txt file 0 Hello everyone. I’m running MSMC2 on a Mac using the next command: msmc_2 -t 1 -I 0,1,2,3,4,5,6,7,8,9,10,11 -i 10 -o Pcal_out Pcal_chr1.multihetsep.txt The program runs fine and there’s no error. I checked the log file and the last line says: [200/200(max)] Maximization Step So…
Contrasting whole-genome and reduced representation sequencing for population demographic and adaptive inference: an alpine mammal case study
Aguirre-Liguori JA, Ramírez-Barahona S, Gaut BS (2021) The evolutionary genomics of species’ responses to climate change. Nat Ecol Evol 5:1350–1360. doi.org/10.1038/s41559-021-01526-9 Article PubMed Google Scholar Andrews KR, Good JM, Miller MR, Luikart G, Hohenlohe PA (2016) Harnessing the power of RADseq for ecological and evolutionary genomics. Nat Rev Genet 17:81–92….
Tools for the reconstruction of demographic history from genome sequences FOR POLYPLOIDS
Tools for the reconstruction of demographic history from genome sequences FOR POLYPLOIDS 0 Good afternoon, I want to reconstruct the demographic history of a polyploid species, using genome sequences. But multiple sequentially Markovian coalescence (MSMC) is suitable only for diploid organisms, as stated in the original article. SMC++ also seems…