Tag: MySQL

Frederick National Laboratory Programmer Analyst II (Bioinformatics) in Frederick, MD | 845321518

Programmer Analyst II (Bioinformatics) Job ID: req3577Employee Type: exempt full-timeDivision: Bioinformatics and Computational ScienceFacility: Frederick: Ft DetrickLocation: PO Box B, Frederick, MD 21702 USA The Frederick National Laboratory is a Federally Funded Research and Development Center (FFRDC) sponsored by the National Cancer Institute (NCI) and operated by Leidos Biomedical Research,…

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Scientist, Bioinformatics job with InVitro Cell Research, LLC

We’re hiring Bioinformatics Scientists with strong backgrounds in database development, management and analysis as they relate to human health and disease biomarkers, with the goal of improving disease prediction and prevention. With ICR, you’ll get to: Design, build, test and refine multiple large biomarker databases in collaboration with multiple ICR…

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We do Data Science, Big Data, Statistics, RStudio, Python, SPSS | Classes & Lessons | City of Toronto

We are a team of experts offering top-quality assignment writing services in the fields of Artificial Intelligence, Machine Learning, Data Science, Big Data, and Statistics. We have in-depth knowledge and experience in the following areas: AI: ✅ Natural Language Processing ✅ Computer Vision ✅ Robotics ✅ Deep Learning ✅ Neural…

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New York Hire Now – Memorial Sloan-Kettering Cancer Center Bioinformatics Software Engineer I

Pay Range $78,900.00-$126,200.00 Company Overview The people of Memorial Sloan Kettering Cancer Center (MSK) are united by a singular mission: ending cancer for life. Our specialized care teams provide personalized, compassionate, expert care to patients of all ages. Informed by basic research done at our Sloan Kettering Institute, scientists across…

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Bioinformatics Analyst I job with Frederick National Laboratory for Cancer Research

Bioinformatics Analyst I Job ID: req3397Employee Type: exempt full-timeDivision: Bioinformatics and Computational ScienceFacility: Frederick: Ft DetrickLocation: PO Box B, Frederick, MD 21702 USA The Frederick National Laboratory is a Federally Funded Research and Development Center (FFRDC) sponsored by the National Cancer Institute (NCI) and operated by Leidos Biomedical Research, Inc….

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Ensembl Production Project Leader at European Molecular Biology Laboratory (EMBL)

Contract Duration-Length of Time (years/months): 3 years (renewable up to 9 years) Contract Duration-Is this renewable to 9 years?: Yes About the team/job We want a talented project leader to develop and manage the Ensembl production infrastructure and release cycles for our current and next generation website. Our infrastructure is under…

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Associate Director / Director Bioinformatics Job Opening in Watertown, MA at Acrivon Therapeutics

Job Description: About Acrivon Therapeutics, Inc.   Acrivon (NASDAQ: ACRV) is a clinical stage biopharmaceutical company developing precision oncology medicines that it matches to patients whose tumors are predicted to be sensitive to each specific medicine by utilizing Acrivon’s proprietary proteomics-based patient responder identification platform, Acrivon Predictive Precision Proteomics, or…

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Get protein information from ensemblbacteria using interpro

Get protein information from ensemblbacteria using interpro 1 So I am trying to access protein information using interpro ids on ensemblbacteria. I have written a MySQL code in R however, I can’t quite figure out how to get protein information using the ids using programming language. I have put in…

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Sr./Principal Scientist, Bioinformatics at Frontier Medicines

Frontier Medicines is seeking a highly motivated and experienced Senior/Principal Scientist in Bioinformatics or Computational Biology to join an emerging Bioinformatics group embedded in our growing Data Sciences team. The ideal candidate has proven experience in the analysis of high-dimensional omics data derived from multiple platforms (such as RNA-seq, Chip-seq,…

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Mobile Programming LLC hiring Data Analyst – Bioinformatics (PD) in Bengaluru, Karnataka, India

Job Description • Job Title: Data Analyst – Bioinformatics • Location: Bangalore • Experience:- 2 – 3 Years • Salary Range: Upto 12 LPA • Notice Period:- Immediate joiner is preferred. Job Description: We are looking for an experienced Data Analyst with a strong background in Bioinformatics to join our…

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Scientist I, Bioinformatics – Virtual based – North Chicago

The Genomics Research Center (GRC) is a center of excellence for genetics and genomics that supports both Discovery and Development. The GRC plays an integral role towards our goal of developing extraordinary genetics and genomics research, focusing on finding the right targets and helping us better understand not only human…

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Bioinformatics Analyst I Accounting – Frederick, MD at Geebo

Job DetailsBioinformatics Analyst I Job ID:req3397Employee Type:exempt full-timeDivision:Bioinformatics and Computational ScienceFacility:Frederick:Ft DetrickLocation:PO Box B, Frederick, MD 21702 USA The Frederick National Laboratory is a Federally Funded Research and Development Center (FFRDC) sponsored by the National Cancer Institute (NCI) and operated by Leidos Biomedical Research, Inc.The lab addresses some of the…

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VEP/ CADD error – ERROR: Assembly is GRCh38 but CADD file does not contain GRCh38 in header.

Dear Biostars, I am having a confusing issue with my CADD plugin. This is confusing because when I run VEP for my whole trio – all the plugins work fine. However when I try to run CADD for individual – pivoted files – it no longer does and I get…

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Bioinformatics Programmer in Bronx, NY for Albert Einstein College of Medicine

Details Posted: 11-May-23 Location: Bronx, New York Type: Full Time Salary: Open Categories: Information Technology Staff/Administrative POSITION RESPONSIBILITIES Oversee the specifications, design, development, and implementation of informatics-based systems for multi-center research protocols that enable research staff to conduct research both individually and collaboratively across Institutions. Assume responsibility for our Data…

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ggplot2 – How do I create this grouped barchart using R ggplot?

Environment: R Console RMySQL ggplot2 I connected my mysql table and have this as an output Category Dataset1 Dataset2 A 30 60 B 70 40 I am having difficulties trying to understand how I can get ggplot to output a grouped bar chart similar to I tried following the instructions…

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Staff scientist in biostatistics and bioinformatics – Strasbourg

Employer The team is studying the functional genomics of diseases involving the immune system. For this purpose, “omics” approaches (genomics, transcriptomics, scRNAseq, proteomics, etc.) are used to better understand the pathophysiology of these diseases. Our objective is in particular to develop new biomarkers allowing an earlier diagnosis of these immune…

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Real-time Analytics News for Week Ending May 6

In this week’s real-time analytics news: The NSF, several other federal agencies, higher education institutions, and other stakeholders will invest $140 million to establish seven new National Artificial Intelligence Research Institutes (AI Institutes). Keeping pace with news and developments in the real-time analytics market can be a daunting task. We…

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Bioconductor 1.9 Packages – Omegahat mirror

Package Maintainer Title codetools Luke Tierney Code Analysis Tools for R RCurl Duncan Temple Lang HTTP request interface RGtk Duncan Temple Lang Initial R bindings for Gtk RMySQL David A. James R interface to the MySQL database SJava Duncan Temple Lang The Omegahat interface for R and Java. SSOAP Duncan…

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Solved This question is based on stocksdb database. You will

To load the “Transaction” table into a data frame tDF in R, we first need to establish a connection to the “stocksdb” database using the RMySQL package. We load the necessary packages (DBI, RMySQL, and ggplot2), and then establish a connection to the database using the dbConnect function.# Load the…

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Work as Sr Bioinformatics Scientist at BaseSolve

At BaseSolve, we are transforming Genomics Data Science Technologies. We provide smart solutions for efficient analysis and management of Next Generation Sequencing data facilitating accurate insights for clinical diagnostics as well as scientific research. Post : Sr Bioinformatics Scientist (2 positions) Your Role As a Senior Bioinformatics Scientist; You will…

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[slurm-users] Several slurmdbds against one mysql server?

On 29-04-2023 11:44, Angel de Vicente wrote: > Hello, > > I’m setting Slurm in a number of machines and (at least for the moment) > we don’t plan to let users submit across machines, so the initial plan > was to install Slurm+slurmdbd+mysql in every machine. > > But…

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Bioinformatics Engineer III at Thermo Fisher Scientific, Inc – Bengaluru

Job Description At Thermo Fisher, our mission is to cure cancer with genomic data. It is a close-knit, collaborative, cross-functional setting where we believe none of us is as smart as all of us and we each have something valuable to contribute toward our goal. The software services team is…

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Bioinformatics Engineer III Job For 0-50 Year Exp In Thermo Fisher Scientific Bengaluru / Bangalore – 13226969

Job Description Job Description : At Thermo Fisher, our mission is to cure cancer with genomic data. It is a close-knit, collaborative, cross-functional setting where we believe none of us is as smart as all of us and we each have something valuable to contribute toward our goal. The software…

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Scientist I, Bioinformatics – Virtual based job with AbbVie

The Genomics Research Center (GRC) is a center of excellence for genetics and genomics that supports both Discovery and Development. The GRC plays an integral role towards our goal of developing extraordinary genetics and genomics research, focusing on finding the right targets and helping us better understand not only human…

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Swagger 3 annotations in Spring Boot

In previous post, we’ve known how to use and configure Swagger 3 in Spring Boot application. This tutorial will give you more examples of Swagger 3 annotations. You can also apply this tutorial on following Projects:– Spring Boot 3 Rest API example– Spring Boot Rest API with H2– Spring Boot…

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[slurm-users] Slurmdbd High Availability

On 4/13/23 11:49, Shaghuf Rahman wrote: > I am setting up Slurmdb in my system and I need some inputs > > My current setup is like > server1 : 192.168.123.12(slurmctld) > server2: 192.168.123.13(Slurmctld) > server3: 192.168.123.14(Slurmdbd) which is pointing to both Server1 and > Server2. > database: MySQL > > I have 1 more server named…

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Bioinformatic Project Manager | Job Offers

Deadline: 14/04/2023 Centre / Institution: Vall d’Hebron Institute of Research Bioinformatics expertise: Biomedical Informatics, Genetic Variation Analysis Keywords: genetics, genomics, rare disease, biomedicine, NGL Job description VHIR offers a position for a Project Manager within the Medicine Genetics Group to participate in the project “Xarxa interhospitalària catalana de variants genètiques…

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Breaking up with the Cloud: Crafting an exit plan

Today businesses are rapidly getting digitally transformed at the back of innovative solutions including Artificial Intelligence, Machine Learning & LLM language models like ChatGPT. Cloud infrastructure and services have played a crucial role in providing impetus to these innovations and truly made it possible to deliver next-gen applications with speed…

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MGnify Website Developer at European Molecular Biology Laboratory (EMBL)

Advertised Grade-Grading: Grade 5 (monthly salary starting at £2,882 after tax) or Grade 6 (monthly salary starting at £3,224) + other paid benefits About the team/job MGnify is EMBL-EBI’s microbiome sequence data analysis resource, which performs the archiving, assembly and analysis of metagenomics data. As the number and diversity of…

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slurm 23.02.1 – Download, Browsing & More

slurm 23.02.1 – Download, Browsing & More | Fossies Archive “Fossies” – the Fresh Open Source Software Archive Contents of slurm-23.02.1.tar.bz2 (28 Mar 22:41, 7265222 Bytes) About: Slurm is a fault-tolerant, and highly scalable cluster management and job scheduling system for large and small Linux clusters. Fossies downloads: / linux /…

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Postdoc in bioinformatics and sequence analysis

The Center for Quantitative Genetics and Genomics (QGG) at Aarhus University invites applications for a position as Postdoc in the field of bioinformatics and sequence analysis as per 1 August 2023 or as soon as possible thereafter. Expected start date and duration of employmentThe position is a fixed-term full-time position…

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MSigDB SQLite Database – GeneSetEnrichmentAnalysisWiki

From GeneSetEnrichmentAnalysisWiki GSEA Home | Downloads | Molecular Signatures Database | Documentation | Contact Introduction With the release of MSigDB 2023.1 we have created a new SQLite database for the fully annotated gene sets in both the Human (2023.1.Hs) and the Mouse (2023.1.Ms) resources. Each ships as a single-file database…

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Postdoc in bioinformatics and sequence analysis – Hiring Urgently at Aarhus Universitet

We are looking to hire a motivated Postdoc in bioinformatics and sequence analysis to join our stellar team at Aarhus Universitet in Århus C.Growing your career as a Full Time Postdoc in bioinformatics and sequence analysis is a great opportunity to develop useful skills.If you are strong in cooperation, people…

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Keys and tags of projects: pytorch – Projects and Requirements – KouSun

Data aggregation at 2023-03-20 23:20:25+08:00 Investment: 900 dollars (USD) – Negotiated Hits: 27 Project keys/tags: tensorflow artificial-intelligence pytorch chatgpt openai Job Description: We are looking for a highly qualified and experienced AI expert to serve as a personal assistant. This is a unique opportunity to work with cutting-edge technology and…

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query UCSC db for CDS coordinates (Gencode)

query UCSC db for CDS coordinates (Gencode) 0 Hi, I’m not sure how to obtain CDS coordinates from GENCODE using mysql on UCSC. Specifically, I’d like to obtain one bed per record of CDS like from the website. I tried to query …using the follow command but the db only…

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9 Top Platforms to Practice Key Data Science Skills

  The nice thing about existing online nowadays is that learning is no longer gatekept. You can read, practice, quiz, and program all by yourself, from the comfort of your own home, without paying for a degree. And because data science is seen as a tricky skill to learn, many…

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Postgres on GCE with workload identity – JupyterHub

New user, first post, new to JupyterHub. I am trying to use an instance of postgres on gce for jupyterhub. At one point I had it working and the db schema created, but it now doesn’t connect and I can’t figure out what I did before that worked I have…

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Pytorch failed after opencv installation – Python

dongho March 11, 2023, 8:11am 1 My python system is anaconda on ubuntu 22.04. If I install pytorch after installing opencv, pytorch cuda stops working. torch.cuda.is_available()False Pytorch worked well before I installed opencv. If I install opencv after installing pytorch, it takes so much time than usual. Sometimes it returns…

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Illumina hiring Senior Staff Software Engineer in Test

Illumina is seeking a highly driven and talented software engineer in test to join the Bioinformatics organization, where we are developing novel informatics solutions for Illumina’s multi-omics technologies. This role is to architect and develop automated tests, tools and frameworks necessary for verifying and/or validating Illumina’s assays and analysis software….

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Senior Staff Software Engineer in Test – Bioinformatics in San Diego, California

What if the work you did every day could impact the lives of people you know? Or all of humanity?At Illumina, we are expanding access to genomic technology to realize health equity for billions of people around the world. Our efforts enable life-changing discoveries that are transforming human health through…

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OpenAPI Jobs

Jobs 1 to 25 of 32 City of London, London, United KingdomHybrid / WFH Options Fimatix UK Ltd Essential Technical Skills Language – JavaScript, NodeJS, Typescript Framework – NestJS/Express/Microservices Testing – Jest/Mocha/Cypress/React testing Library API OpenAPI/GraphQL/GRPC Messaging – AMQP/RabbitMQ/Kafka Data Storage – MongoDB/Mongoose…

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slurm 23.02.0 – Download, Browsing & More

slurm 23.02.0 – Download, Browsing & More | Fossies Archive “Fossies” – the Fresh Open Source Software Archive Contents of slurm-23.02.0.tar.bz2 (28 Feb 20:00, 7258420 Bytes) About: Slurm is a fault-tolerant, and highly scalable cluster management and job scheduling system for large and small Linux clusters. Fossies downloads: / linux /…

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Urgently Require Bioinformatics Training in Pragathi Nagar, Hyderabad – Job ID 12854700

Some of the Bioinformatics Training Jobs are given below. Average Salary for Bioinformatics Training Jobs is ₹ 2,000 – ₹ 10,000 per month. You can further estimate salary using the Bioinformatics Fees calculator. V – Bioinformatics Teacher Job by Vishnu JNTU, Kukatpally, Hyderabad, I am willing to travel Immediately 03…

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Running SQL Queries in Jupyter Notebook using JupySQL, DuckDB, and MySQL | by Wei-Meng Lee | Feb, 2023

Learn how to run SQL in your Jupyter Notebooks Photo by Wafer WAN on Unsplash Traditionally, data scientists use Jupyter Notebook to pull data from database servers, or from external datasets (such as CSV, JSON files, etc) and store them into Pandas dataframes: All images by author unless otherwise stated…

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Credence Genomics (Pvt) Ltd hiring Bioinformatician in Chennai, Tamil Nadu, India

At this time our organisation has multiple positions that will be positioned across South Asia and South East Asia. POSITION 1: Bioinformatic position : Onsite only: Level 1 – 3 ( Depending on exam and interview outcome – [ Technical interview 4 hours – Remote Application skill assessment & Oral interview…

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[slurm-users] Running Containerized Slurmctld and Slurmdb in Production?

Howdy,   Just wondering if any sites are running containerized Slurmctld and Slurmdbd in production?   We are in the process of planning migrating from a single host running slurmctld, slurmdbd, and MySQL (and other HPC services) to separate OpenStack VMs. Our site averages less than 1000’s running / pending…

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There Is No Package Called ‘GGPLOT2’

The error in library(ggplot2) : there is no package called ‘ggplot2’ can occur because of ggplot package not installed or not loaded in the current R session, incorrect spelling or capitalization in the package name, or R version compatibility issues. This article describes each of the causes in detail, along…

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Bioinformatics Programmer – 118809

UCSD Layoff from Career Appointment: Apply by 09/22/2022 for consideration with preference for rehire. All layoff applicants should contact their Employment Advisor. Special Selection Applicants: Apply by 10/04/2022. Eligible Special Selection clients should contact their Disability Counselor for assistance. Biomedical Informatics is an interdisciplinary field at the intersection of biology,…

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Error in .call.graphics(C_palette2, .Call(C_palette2, null)) : Invalid Graphics State

Error in .Call.graphics(C_palette2, .Call(C_palette2, NULL)) : invalid graphics state might occur while using the ggplot2 package. Its possible reasons include an incorrectly installed ggplot2 package, a messed up graphics device, insufficient plot area, etc. But there isn’t anything to worry about while you have this comprehensive guide opened up in…

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22.10 – Configuring MySQL for SLURM

I’m having problems getting SLURM (for job scheduling) to work with a MySQL database. I was using this as a reference, but perhaps I misunderstood something in it. If someone can let me know what I’ve missed, that would be great… This is SLURM 21.08 on Ubuntu 22.10. I’m using…

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Bioinformatics Programmerother related Employment listings

Quick Apply Full-time 2 hours ago Full Job Description Job Summary Blue Marble Space Institute for Science (bmsis.org) is seeking a mid-level or senior Bioinformatics Programmer with experience in analyzing large-scale epigenomics, genomics, transcriptomics, proteomics, and metabolomics data to support the GeneLab Project at NASA Ames Research Center (genelab.nasa.gov/).The Bioinformatics…

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slurm 22.05.8 – Download, Browsing & More

slurm 22.05.8 – Download, Browsing & More | Fossies Archive “Fossies” – the Fresh Open Source Software Archive Contents of slurm-22.05.8.tar.bz2 (26 Jan 23:18, 6955194 Bytes) About: Slurm is a fault-tolerant, and highly scalable cluster management and job scheduling system for large and small Linux clusters. Fossies downloads: / linux /…

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Mid/Sr Web Programmer Job in Maryland (MD), Bioinformatics Career, Full Time Jobs in Frederick National Laboratory for Cancer Research

Mid/Sr Web Programmer Job ID: req3316Employee Type: exempt full-timeDivision: Bioinformatics and Computational ScienceFacility: Frederick: Ft DetrickLocation: PO Box B, Frederick, MD 21702 USA The Frederick National Laboratory is a Federally Funded Research and Development Center (FFRDC) sponsored by the National Cancer Institute (NCI) and operated by Leidos Biomedical Research,…

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Senior Bioinformatics Java Engineer, cBioPortal for Cancer Genomics at Dana-Farber Cancer Institute in 450 Brookline Ave, Boston, MA

The Knowledge Systems Group (KSG) at DFCI is currently seeking a Senior Bioinformatics Java Engineer to contribute to the open source cBioPortal for Cancer Genomics. The cBioPortal for Cancer Genomics is the leading visualization and analysis tool for cancer genomics.  It is an open-source software platform that enables interactive, exploratory…

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Principal Bioinformatics Software Engineer, Java Development at Roche in Santa Clara, CA 202201-103435

The Position This position may be based out of Santa Clara, California, USA, with remote work locations possible in The United States. Impact Healthcare Roche Sequencing is not only changing science, but we are changing lives. Our software teams are laying the groundwork for the future by developing powerful bioinformatics…

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Solved Requirements For this assignment, complete the

Transcribed image text: Requirements For this assignment, complete the following requirements: 1. Research and locate a dataset stored as a .csv file from kaggle.com that interests you. Save the URL (web address) of the page you downloaded the dataset from that shows the information about the file. 2. The .csv…

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get build 37 positions from dbSNP rsIDs

get build 37 positions from dbSNP rsIDs 4 $ mysql –user=genome –host=genome-mysql.cse.ucsc.edu -A -D hg19 -e ‘select chrom,chromStart,chromEnd,name from snp147 where name in (“rs371194064″,”rs779258992″,”rs26″,”rs25”)’ +——-+————+———-+————-+ | chrom | chromStart | chromEnd | name | +——-+————+———-+————-+ | chr7 | 11584141 | 11584142 | rs25 | | chr7 | 11583470 | 11583471…

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Project Scientist at Alagappa University, Tamil Nadu, India

Project Scientist at Alagappa University, Tamil Nadu, India Designation/Position-  Project Scientist at Alagappa University Alagappa University, Tamil Nadu, India, invites applications for Project Scientist at Alagappa University from eligible and interested candidates About- Alagappa University is located at Karaikudi in Tamil Nadu and is accessible from Madurai and…

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Senior Scientist Bioinformatics job with Parexel – USA

The Senior Scientist Bioinformatics operationally delivers client projects for Biomarker and Genomic Medicine (BGM) services. They will demonstrate deep knowledge of scientific principles and concepts related to one or more capabilities and is experienced in industry standards. They will provide support for the BGM strategy and interpretation to other SBUs…

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logits to softmax pytorch

A tag already exists with the provided branch name. Join the PyTorch developer community to contribute, learn, and get your questions answered. Space – falling faster than light? We are converting the layers using ReLu and other neural networks. Learn more, including about available controls: Cookies Policy. In addition, the…

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Principal Software Engineer – Bioinformatics Job in Mississauga, Ontario – Hoffmann-La Roche Ltd

Impact HealthcareRoche Sequencing is not only changing science, but we are changing lives. Our software teams are laying the groundwork for the future by developing powerful bioinformatics algorithms, data analysis tools, and software/systems infrastructures so researchers and clinicians can make better health decisions faster. The path to curing cancer lies…

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a new and efficient development model, to achieve code and API separation, efficient development, development must see!!!

什么是openapi 3.0 OpenAPI 3.0.0 是 OpenAPI The first official version of the specification,因为它是由 SmartBear Software 捐赠给 OpenAPI Initiative,并在2015年从 Swagger 规范重命名为 OpenAPI 规范. 介绍: OpenAPI 规范(OAS),is to define a standard、programming language-independentRESTful API的规范.OpenAPI Specifications enable both humans and computers to“Do not contact with any program source code and documentation、Does not monitor network…

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Installing ensembl-vep

Installing ensembl-vep 1 Hello all , I tried installing ensembl-Vep on mu ubuntu using following commands git clone github.com/Ensembl/ensembl-vep cd ensembl-vep perl INSTALL.pl I got the error as :- ERROR: DBI module not found. VEP requires the DBI perl module to function I tried installing DBI etc but the error…

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Postdoctoral fellow in Bioinformatics with focus on antibiotic resistance

Göteborgs universitet möter samhällets utmaningar med mångsidig kunskap. 56 000 studenter och 6 600 medarbetare gör universitetet till en stor och inspirerande arbetsplats. Stark forskning och attraktiva utbildningar lockar forskare och studenter från hela världen. Med ny kunskap och nya perspektiv bidrar Göteborgs universitet till en bättre framtid. We seek…

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Sr. Bioinformatics-Clinical Database Developer – CBL Path, Inc

Job Functions, Duties, Responsibilities and Position Qualifications: POSITION TITLE:Senior Bioinformatics-Clinical Database Developer STANDARDIZED JOB TITLE: Database Development, Web Application Development, and Clinical Analytics EXEMPT STATUS:  Exempt POSITION SUMMARY: Sr. Database Developer works with cross-functional groups & Medical Leadership for developing a databases for a clinical assays. The candidate is expected…

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Bioinformatics Software Engineer III in New York, NY for Memorial Sloan-Kettering Cancer Center

Details Posted: 05-Jul-22 Location: New York, New York Type: Full-time Salary: Open Categories: Academic/Faculty Company Overview At Memorial Sloan Kettering (MSK), we’re not only changing the way we treat cancer, but also the way the world thinks about it. By working together and pushing forward with innovation and discovery, we’re…

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Open Rank Bioinformatics Software Engineer I and Bioinformatics Engineer II in Baltimore, MD for University of Maryland, Baltimore

Open Rank Bioinformatics Software Engineer I and Bioinformatics Software Engineer II The Institute for Genome Sciences (IGS), Informatics Resource Center, is recruiting for a Open Rank Bioinformatics Software Engineer I and Bioinformatics Software Engineer II position. This position will be filled as either the Bioinformatics Software Engineer I or II.IGS…

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Database Administrator at European Molecular Biology Laboratory (EMBL)

About the team/job In this role you will join an established Database team of database administrators in order to support the ongoing database operations. The main duties for this post are: DBA of MySQL and MongoDB.The Database Team provides day-to-day Database Administration support , database performance tuning and query optimization…

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Recent questions tagged fasta – Q&A

Most popular tags python javascript html java css reactjs c# php r sql arrays pandas c++ android jquery DataFrame python-3.x node.js c mysql list flutter JSON ios typescript sql-server swift string angular regex laravel excel django dictionary dart bash numpy postgresql loops oracle vba linux angularjs function for-loop spring spring-boot…

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DNA sequencing with Python | Python | GitHub | Bioinformatics

Hello, i need to add a step into a script (find attached). The step is DNA sequencing with a Python library, for example: [login to view URL] [login to view URL] [login to view URL] You can find many on Github. Thanks Skills: Python, GitHub, Bioinformatics See more: need classified…

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Bioinformatics Data Engineer in Boston, MA for Dana-Farber Cancer Institute

Details Posted: 27-Apr-22 Location: Boston, Massachusetts Salary: Open Categories: Staff/Administrative Internal Number: 2022-26005 Located in Boston and the surrounding communities, Dana-Farber Cancer Institute (DFCI) brings together world renowned clinicians, innovative researchers and dedicated professionals, allies in the common mission of conquering cancer, HIV/AIDS and related diseases. Combining extremely talented people…

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Bioconductor – AHEnsDbs

DOI: 10.18129/B9.bioc.AHEnsDbs     This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see AHEnsDbs. EnsDbs for AnnotationHub Bioconductor version: 3.10 Supplies AnnotationHub with EnsDb Ensembl-based annotation databases for all species. EnsDb SQLite databases are generated separately from Ensembl MySQL databases using functions from the…

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Manager of Bioinformatics in Chicago, IL for University of Chicago (UC)

Details Posted: 22-Apr-22 Location: Chicago, Illinois Type: Full-time Salary: Open Categories: Research – Laboratory/Non-Laboratory Staff/Administrative Location: Hyde Park Campus Job Description: Leads a team of bioinformaticians and provides technical guidance for the team to follow best practices and deliver data production timely. Collaborates cross-functionally with our user services, software engineering,…

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Single cell database scrna dB for bioinformatics database development (1)

Single cell database construction High quality integrated single cell database If readers just want to get a ready-made single-cell database with rich content and add it to their own PC or linux The server , You can skip the following detailed theoretical tutorial Database download link : Click to download…

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Senior Bioinformatics Engineer, remote in Marlborough, MA at Quest Diagnostics

Look for more than answers. At Quest, we are on a continuous journey of discovery and development. It’s this attitude that has made us an industry leader and the #1 Diagnostic Lab in the US. For those joining us, we offer exciting and fast-moving career opportunities where you can affect…

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Using AnnoTree to Get More Assignments, Faster, in DIAMOND+MEGAN Microbiome Analysis

INTRODUCTION Next-generation sequencing (NGS) has revolutionized many areas of biological research (1, 2), providing ever-more data at an ever-decreasing cost. One such area is microbiome research, the study of microbes in their theater of activity using metagenomic sequencing (3). Here, deep short-read sequencing, and improving performance of long-read sequencing, are…

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[slurm-users] Issues upgrading db from 20.11.7 -> 21.08.4

Hello! I’m trying to test an upgrade of our production slurm db on a test cluster. Specifically I’m trying to verify a update from 20.11.7 to 21.08.4. I have a dump of the production db, and imported as normal. Then firing up slurmdbd to perform the conversion. I’ve verified everything…

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MySQL always no result – Discussion

So I’ve been trying to create a custom system (kinda lika a garage system, but different) for my server.As I got to the part where I display the player all vehicles he ownes I need to create a server callback where the script gets all vehicles from the database using…

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Genomics and Bioinformatics in Ames, IA for Iowa State University

Details Posted: 08-Jan-22 Location: Ames, Iowa Salary: Open Categories: Academic/Faculty Position Title: Postdoctoral – Genomics and Bioinformatics Appointment Type: Post Doc/Trainee Job Description: Summary of Duties and Responsibilities: Contribute to the Functional Annotation of Animal Genomes (FAANG) project in developing and testing of pipelines for the analysis of high-throughput genomics…

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3 RStudio Professional Database Drivers

The RStudio Pro Database Drivers are installed on-demand by the RStudio IDE. Doing so requires internet connectivity. To test this, start RStudio and invoke the New Connection dialog from the Connections pane. The New Connection dialog shows the available database drivers. Select one, such as MySQL. RStudio first offers to…

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Bioinformatician – qPCR and annotation directions Jobs at Nalagenetics, Jakarta

We are hiring a bioinformatics specialist interested in developing a clinical decision support for implementation of genetics in clinical settings. The person will be responsible of building analytical pipelines forpatients’ genomic, demographic, and individual data, as well as working with our senior software engineer tointegrate our knowledge base with existing…

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docker – SLURM cluster inside k8s cannot run srun command

I’m a beginner k8s user, I’m trying to recreate this docker-compose SLURM cluster with kubernetes. First I converted the docker-compose.yaml file into k8s yaml file in order to use kubectl apply -f . to create pods and services. I’m using minikube on my computer with the none driver (like this…

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Bioinformatics Software Developer | IT Job Board

Opportunity to join the computational team of a exciting biotech. Your new company I am currently working alongside an Oxford based biotech that focuses on clinical research and diagnostic solutions. Founded by a team from the University of Oxford, they have aims to progress the future of genetic-based medicine and…

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Scientist, Bioinformatics – Leonia | Mendeley Careers

We’re hiring Bioinformatics Scientists with strong backgrounds in database development, management and analysis as they relate to human health and disease biomarkers, with the goal of improving disease prediction and prevention. With ICR, you’ll get to: Design, build, test and refine multiple large biomarker databases in collaboration with multiple ICR…

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Bioinformatics Data Scientist in South West London (SW11) | X4 Group

A leading Researcher in rare diseases is searching for an experienced Lead Data Scientist to join them on a permanent, or contract to perm basis. The Company: Working in a ground-breaking area of medicine, they are continuously researching and developing unique genetic codes to help diagnose, treat and prevent illnesses….

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Affinia Therapeutics hiring Senior Scientist, Bioinformatics/Computational Biology in Waltham, MA, US

About Affinia Therapeutics Affinia Therapeutics is working to transform gene therapy through a methodically designed proprietary platform. By engineering vectors and gene constructs, Affinia is building toward revolutionary treatments for devastating diseases. Job Description Scientist/Senior Scientist, Bioinformatics/Computational Biology Affinia Therapeutics is an innovative gene therapy company with a proprietary platform…

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PPI-Network igraph for tissue-specific data

PPI-Network igraph for tissue-specific data 0 I am new to bioinformatics in general and would really appreciate some help with the project Im working on. My data of protein-protein interactions is constructed in a table (stored in MySQL) with binary information about tissue-specificity. Now I am trying to create an…

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BioSpace hiring Scientist, Bioinformatics in Leonia, New Jersey, United States

We’re hiringBioinformatics Scientists with strong backgrounds in database development, management and analysis as they relate to human health and disease biomarkers, with the goal of improving disease prediction and prevention. With ICR, You’ll Get To Design, build, test and refine multiple large biomarker databases in collaboration with multiple ICR teams…

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gmod advanced duplicator 2

Advanced Duplicator 2 is a Garry’s Mod addon which implements a tool similar to the Duplicator, but with many added features. Yeah no problem mate, thanks for the response. I’m done with gmod and I don’t take requests, so please stop spamming the comment section. “Originally published in single magazine…

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Bioinformatics and Assay Development Scientist II – San Francisco, CA | South San Francisco, CA

Date posted: Sep 16, 2021 Bioinformatics and Assay Development Scientist II – San Francisco, CA The Monogram division of LabCorp, which is focused on high complexity cell-based assay development, has an exciting opportunity for a Scientist to join its R&D Diagnostics Development Team. The selected candidate will design, build and…

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UCSC MySQL access

UCSC MySQL access 1 Anyone know if the public can still access UCSC db remotely? Can’t seem to get access :/ genome.ucsc.edu/goldenPath/help/mysql.html XXX@XXX-MacBook-Pro:~$ mysql –user=genome –host=genome-mysql.soe.ucsc.edu -A -P 3306 ERROR 2002 (HY000): Can’t connect to MySQL server on ‘genome-mysql.soe.ucsc.edu‘ (36) XXX@XXX-MacBook-Pro:~$ mariadb –version mariadb Ver 15.1 Distrib 10.5.8-MariaDB, for osx10.15…

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SNP exon region UCSC

SNP exon region UCSC 2 how i can get SNP in only exons regions genome with UCSC? UCSC get the all SNP of gene region, and there is no filter option to get only exon region. tx ucsc SNP exon • 245 views • link updated 2 hours ago by…

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Bioinformatician / Pipeline developer job with Paramount Recruitment

Bioinformatics / Pipeline Developer – Post DocCambridge This is a fantastic opportunity for a Post-Doc/PhD Graduate to join the R&D computational biology group as a Bioinformatics pipeline developer. This exciting company aim to transform the lives of cancer patients and their families through the development of precision treatments and ground-breaking…

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Sql Server Import From Excel With Sql, Duplicate Column Names

Explore LabKey Server’s specialized tools for assay data management below and read additional documentation on the LabKey support and documentation portal. Flow. Using SQL Search you can search for the column name and find all the stored procedures where it is used. Work faster. Finding anything in the Object Explorer….

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DNA Sequence Classification Based on Milvus

Introduction DNA sequencing is a popular concept in both academic research and practical applications, such as gene traceability, species identification, and disease diagnosis. Whereas all industries starve for a more intelligent and efficient research method, artificial intelligence has attracted much attention, especially from the biological and medical domains. More and…

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Senior Machine Learning/Bioinformatics Software Engineer, Research – Invitae

Invitae is dedicated to bringing comprehensive genetic information into mainstream medicine to improve healthcare for billions of people. Our team is driven to make a difference for the patients we serve. We are leading the transformation of the genetics industry, by making genetic testing affordable and accessible for everyone to…

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Extracting exons and transcripts from gff3/gtf

I was just doing something similar about a week ago. You may be able to accomplish this using the GenomicFeatures R package. First load up the following in R: library(GenomicFeatures) library(GenomicRanges) library(rtracklayer) Then you will need to get the chromosome sizes file, which you can generate with directions from this…

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gmod prop hunt not working

I’ve let the server stay open so you can join it and test for yourself. Game Garry’s Mod. It’s just textures (and maps, if you need it) for use as an addon to Garry’s Mod. From hunting down everyday objects in Prop Hunt to strangling and trampling pigs in Open…

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Failed to open required defaults file mysql.cnf

Failed to open required defaults file mysql.cnf 0 Hi everyone. I know this may be a more general problem but I don’t know where to ask. I’m trying to run Stacks but this error keeps appearing: Failed to open required defaults file: usr/miniconda3/envs/genomevol/share/stacks/sql/mysql.cnf I’ve tried updating mysql, installing mysql-server instead…

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