Tag: nextflow

Insight Global hiring Bioinformatics Software Engineer in Tennessee, United States

Job Description: 1) Use Nextflow to build bioinformatics pipelines that take FASTQ or BAM files as input and process them using bioinformatic tools. 2) Write Python/R scripts to process, summarize, and visualize outputs created by other tools. 3) Ensure that the pipeline is modular and flexible, with the ability to…

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Amplifybio, LLC Sr./Scientist, Bioinformatics in South San Francisco, CA | 892968472

Are you passionate about significantly improving the future of medicine? Do you believe that people are the most important asset of any company? If so, join AmplifyBio! AmplifyBio is a company dedicated to building an integrated environment where clients can access technologies, platforms, capabilities and safety testing for the scale…

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Bioinformatics scientist | GENOMINES

Job Description Who we are Genomines is a young biotechnology company based in Paris and Saclay, specialized in sustainable extraction of Nickel from plants. The mission of Genomines is to usher in a new era of sustainable mining by using genetically enhanced plants to extract metals from soil (agromining). Through…

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Sr. Software Engineer in Test (Bioinformatics or Data Sciences) / SDET – Key Infotek LLC

Job Title: Sr. Software Engineer in Test (Bioinformatics or Data Sciences) Location: Mississauga, CAD Pay Rate: DOE   Requirements: B.S. or M.S. in Computer Science, Data Sciences, Bioinformatics, Biomedical engineering or equivalent field 5+ years of experience in software development or software test engineering or data engineering Proficiency in Python,…

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Vimerse InfoTech Inc hiring Sr. Software Engineer (Bioinformatics) in Mississauga, Ontario, Canada

Job Title: Sr. Software Engineer in Test (Bioinformatics or Data Sciences) Location: Mississauga, CAD Impact Healthcare Roche Sequencing is not only changing science, but we are changing lives. Our software teams are laying the groundwork for the future by developing powerful bioinformatics algorithms, data analysis tools, and software/systems infrastructures so…

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KeyInfo hiring SDET must have (Bioinformatics or Data Sciences) in Canada

Job Title: Sr. Software Engineer in Test (Bioinformatics or Data Sciences) Remote Description: Responsibilities: •         Implement and maintain an end-to-end automation test framework for running UI integration tests and quality dashboards using various tools: Java, JavaScript/TypeScript, Cypress, Selenium WebDriver, Cucumber, TestNG, Junit •         Design and develop requirements based test cases •         Implement automated…

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Senior Bioinformatics Engineer / Software Developer| Science, Engineering & Life Science Recruitment, Jobs & Staffing | SRG

A Bioinformatics Engineer is required to join a small but rapidly expanding company – by joining early in the journey you will gain exposure to the various facets of start-up life and have a unique chance to contribute to the technology and influence company culture. As the company expands this…

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NGS Data Analysis Workshops 2024

News:NGS Data Analysis Workshops 2024 0 Exciting News: ecSeq Bioinformatics 2024 Workshops Are Here! We’re thrilled to announce our diverse range of bioinformatics workshops for 2024, now open for registration! Whether you’re a beginner or looking to deepen your expertise, our courses are designed to elevate your skills in the…

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SRA Staffing – SRA Group hiring QA Analyst with Bioinformatics in Mississauga, Ontario, Canada

Title: QA Analyst with Bioinformatics Work location: Mississauga, Canada (Hybrid) Duration: 1 Year Plus Contract Job Description: B.S. or M.S. in Computer Science, Data Sciences, Bioinformatics, Biomedical engineering or equivalent field • Min 5 years of experience in software development or software test engineering or data engineering • Proficiency in…

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Bioinformatics Intern job with Element Biosciences

At Element Biosciences, we are passionate about our mission to empower the scientific community with more freedom and flexibility to accelerate our collective impact on humanity. We have built a highly efficient product-driven organization where employees can learn, grow, and thrive in a challenging but encouraging environment. We are committed…

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Sr. Scientist of Computational Biology/Bioinformatics at Flagship Pioneering, Inc. – Cambridge, MA USA

Company Summary: Each day, the lives of more than 2 billion people across the globe are impacted by chronic diseases. Moreover, the economic burden on society of treating chronic disease is spinning out of control. Today, this dire situation appears unlikely to change as >95% of global healthcare costs are…

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How to use Nextflow to call scripts from different environments?

How to use Nextflow to call scripts from different environments? 0 I have the following conda environments: wf-preprocess_env wf-assembly_env Each environment has unique dependencies installed. I have 3 scripts: preprocess.py which I use with wf-preprocess_env environment assembly.py and assembly-long.py which I use with wf-assembly_env How can I use Nextflow to…

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Freshers Bioinformatics Jobs at Eminent Biosciences (EMBS)

–Must See– Freshers Bioinformatics Jobs at Eminent Biosciences (EMBS) Opportunities for BE / B.Tech / M.Sc / M.Tech / Bioinformatics (Only for Freshers) at Eminent Biosciences (EMBS), Indore. DBT (Govt of India) Funded project position at Eminent Biosciences (EMBS), Indore. Project Title: Personalized cancer treatment using Next-Generation Sequencing in Clinical…

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Advances in personalised medicine, leave data processing behind

The buzz around personalised medicine has long been felt in the halls of academic centres and pharmaceutical labs, and most people with an interest in health or medicine are aware of its potential. Here, Evan Floden shares what it will take to shore up these exciting possibilities. According to the…

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Syngene Bioinformatics Research Job – Biotech Apply Online

“Breaking News: Syngene Hiring Research Investigator For Cutting-Edge Biotech Role!” –Must See– Syngene Bioinformatics Research Job – Biotech Can Also Apply Online Incorporated in 1993, Syngene International Ltd. is an innovation-focused global discovery, development, and manufacturing organization providing integrated scientific services to the pharmaceutical, biotechnology, nutrition, animal health, consumer goods,…

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Energy Jobline hiring Senior Bioinformatics Engineer in Cambridge, England, United Kingdom

Company DescriptionGenomics England partners with the NHS to provide whole genome sequencing diagnostics. We also equip researchers to find the causes of disease and develop new treatments – with patients and participants at the heart of it all. Our mission is to continue refining, scaling, and evolving our ability to…

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Telethon Kids Institute hiring Bioinformatics Engineer in Perth, Western Australia, Australia

The Opportunity We are seeking a highly skilled and motivated Bioinformatics Engineer to join our Indigenous Genomics team, here at the Telethon Kids Institute. The Indigenous Genomics team operates out of Perth, Adelaide and Melbourne, and comprises a diverse, multi-disciplinary, Indigenous-led group of professionals and researchers, with expertise across genomics,…

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Senior Bioinformatics Software Engineer – Land A Remote Job From Top Employers

The Center for Applied Bioinformatics (CAB) at the St. Jude Children’s Research Hospital (SJCRH) is seeking a creative Software Engineer with a strong background in bioinformatics to join our development team to create and maintain our vital analytical infrastructure. The new hire will work closely with a team of computer…

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DS Group hiring Bioinformatician in London, England, United Kingdom

Bioinformatician – Deep Learning, Python, PyTorch, GWAS, RNA At the company, a leading agbiotech start-up, safeguarding the future of food is at the heart of what drives and inspires every member of the team. With a mission to accelerate the development of more productive, sustainable, nutritious, and climate-resilient food sources,…

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Arcadia Science hiring Scientist, Protein Bioinformatics in Berkeley, CA, US

About Arcadia Science Arcadia Science is pushing the boundaries of open science and innovating at every step in the research, development, and commercialization process. Job Description A Bit About Us:   We are Arcadia Science. Arcadia is a science company founded and led by scientists. Our mission is to transform…

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Head of the Medical Bioinformatics platform (m/f/d) – Kiel

Das Universitätsklinikum Schleswig-Holstein (UKSH) verbindet internationale Spitzenforschung mit interdisziplinärer Krankenversorgung. Wir sind einziger Maximalversorger und größter Arbeitgeber des Landes. Unsere mehr als 14.500 Mitarbeiter*innen stellen eine höchst individuelle Versorgung sicher – unverzichtbar für die Menschen in Schleswig-Holstein.The Institute of Clinical Molecular Biology (IKMB)The Medical Faculty together with the Institute of…

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[Hiring] QA Engineer Release Manager @Lifebit Biotech Ltd at Lifebit Biotech Ltd

Nov 22, 2023 – Lifebit Biotech Ltd is hiring a remote QA Engineer Release Manager. 📍Location: Europe. At Lifebit, we carve our own path. We’re open-source pioneers and our driving mission is to revolutionise bioinformatics and biomedical data analysis forever. Our product, Lifebit CloudOS, is the world’s first federated genomics…

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Allen Institute for AI (AI2) hiring Head of Bioinformatics at Stealth Life Science Startup in Seattle, WA

About UsWe are an early stage startup using generative AI to fundamentally change life sciences research and accelerate the pace of biomedical discovery. Genomic data are at the heart of most modern molecular studies and tools, from basic research to clinical decision support, but these data are hard to work…

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Pass reads file form host to container

Docker: Pass reads file form host to container 0 Hello, I need your help please. I want to create docker container to analyse my reads, to run it via nextflow or wdl worflow. I have a python script, and I would like to pass my reads as argument something like…

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Is there a good software to generate test genomics data?

Is there a good software to generate test genomics data? 0 For example if I input a reference genome FASTA can I get simulated FASTQ files for ONT sequencing or PacBio sequencing runs that could have produced that data? I’m trying to migrate over from Snakemake to Nextflow but from…

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Job Application for Scientist I, Bioinformatics at Scribe Therapeutics

Scientist I, Bioinformatics Scribe Therapeutics is a molecular engineering company focused on creating best-in-class in vivo therapies that permanently treat the underlying cause of disease. Founded by CRISPR inventors and leading molecular engineers Benjamin Oakes, Brett Staahl, David Savage, and Jennifer Doudna, Scribe is overcoming the limitations of current genome…

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Sr Scientist I, Bioinformatics Engineer job with AbbVie

The Genomics Research Center (GRC) is a center of excellence for genetics and genomics that supports both Discovery and Development. The GRC plays an integral role towards our goal of developing extraordinary genetics and genomics research, focusing on finding the right targets and helping us better understand not only human…

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MAJOR Computational Biology Research Lab

MAJOR Computational Biology Research Lab (MCBRL) uses computer science algorithms to solve biology related problems, bioinformatics software development and develop bioinformatics cloud computing platforms or services for handling and analyzing large-scale biological data.. The workflow of hdWGCNA analysis for Single-cell Spatial Transcriptomics data RNA-seq Schematicsc/nRNA-seq Schematic ” RNA-seq Schematic 空间转录共表达网络分析流程…

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Advisor/Sr. Advisor – Bioinformatics – Relocation Assistance job with Lilly

At Lilly, we unite caring with discovery to make life better for people around the world. We are a global healthcare leader headquartered in Indianapolis, Indiana. Our employees around the world work to discover and bring life-changing medicines to those who need them, improve the understanding and management of disease,…

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Lilly Advisor/Sr. Advisor – Bioinformatics in New York, NY | 883515845

At Lilly, we unite caring with discovery to make life better for people around the world. We are a global healthcare leader headquartered in Indianapolis, Indiana. Our employees around the world work to discover and bring life-changing medicines to those who need them, improve the understanding and management of disease,…

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Nextflow bwa-mem2 pipeline/channel question

Hello, I’m trying to write a simple bwa script for my research, but it keeps failing. I have two questions in this post. The first code can be executed, but only the first paired fastq files are processed. Google search tells me it’s because the index_ch is a queue channel…

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Bioinformatician at European Molecular Biology Laboratory (EMBL)

About the team/job The Cortes-Ciriano group co-leads the CRUK-funded Stratified Medicine Pediatrics Programme (SMPEDS). SMPEDS is the UK national molecular profiling platform for children with relapsed cancer and it successfully provides infrastructure to triage patients into clinical trials by identifying molecular abnormalities in rapid turnaround, with clinical reporting through a…

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Data Engineer II, Bioinformatics at Flagship Pioneering, Inc. – Cambridge, MA USA

Company Summary: Arana Biosciences is one of the latest companies founded through Flagship Pioneering’s venture creation engine, where companies such as Moderna Inc. and Indigo Ag were conceived and created. Since Flagship’s founding in 2000, the firm has originated and fostered the development of nearly 100 scientific ventures resulting in…

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Genomics England hiring Senior Bioinformatics Engineer in London, England, United Kingdom

Company DescriptionGenomics England partners with the NHS to provide whole genome sequencing diagnostics. We also equip researchers to find the causes of disease and develop new treatments – with patients and participants at the heart of it all. Our mission is to continue refining, scaling, and evolving our ability to…

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Senior Bioinformatics Engineer by Genomics England in Cambridge Ref: 220521761

Company Description Genomics England partners with the NHS to provide whole genome sequencing diagnostics. We also equip researchers to find the causes of disease and develop new treatments – with patients and participants at the heart of it all. Our mission is to continue refining, scaling, and evolving our ability to…

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An extremely fast Non-Overlapping Exon Length calculator written in Rust

Hi all! Introducing the Non-Overlapping Exon Length calculator (NOEL), an extremely fast GTF/GFF per gene exon length extractor written in Rust. See the code and latest updates here: github/alejandrogzi/noel In case you do not want to read the whole text: NOEL outperforms all open-sourced scripts/tools for this task. It can…

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Ivy Farm Technologies hiring Senior Bioinformatician in Oxford, England, United Kingdom

The insights we’ll get using bioinformatics will be essential in fulfilling Ivy Farm’s mission to create the world’s best guiltfree and sustainable meat. And that’s why we’re hiring our first permanent Senior Bioinformatician, as part of our humble community of some 50 scientists; a team where you can make a…

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Bioinformatics Data Engineer Job in West Yorkshire

Job Description Overview Of Role Are you a talented Data Engineer with a passion for advancing the field of bioinformatics? We are seeking a skilled individual to join our team working on an innovative discovery platform, known as KnetMiner. KnetMiner transforms the integration of genomics, genetics, literature information into comprehensive…

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Arcadia Science hiring Scientist, Protein Bioinformatics in Berkeley, California, United States

A Bit About UsWe are Arcadia Science. Arcadia is a science company founded and led by scientists. Our mission is to transform evolutionary innovations into real-world solutions by openly developing more efficient, replicable, and sustainable ways to leverage the biology of diverse organisms. The Opportunity We are looking for an…

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Research Officer | Jobs/Training Opportunities

Reports To:  Study Principal Investigator Directly Supervises: None Indirectly Supervises: None Budget and Resource Responsibility: None. Key Responsibilities: To develop bioinformatics tools suitable for general-purpose computing environments that support federated analysis of genomic data Develop and curate reproducible bioinformatics pipelines for analysis of genomic data using SnakeMake and Nextflow.  Develop data analysis…

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Bioinformatics Scientist (Data Science) – NeuroTechX

  Bioinformatics Scientist (Data Science) Research – Data Sciences           ·            Cambridge, MA             ·          Full time    About Voyager Therapeutics  Voyager Therapeutics (Nasdaq: VYGR) is a biotechnology company dedicated to breaking through barriers in…

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Analytical Scientist in Bioinformatics Software/Pipeline Development at The Institute of Cancer Research

Job Details Under the leadership of Dr Syed Haider, we are seeking to appoint a highly motivated analytical scientist with experience in genomic and transcriptomic data analysis to join our Breast Cancer Research Bioinformatics Group. We employ cutting-edge data-mining techniques in collaboration with experimental investigators to identify new molecular markers of breast…

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NatureMetrics hiring Bioinformatics Engineer in Guildford, England, United Kingdom

Bioinformatics Engineer – Introduction If you have a PhD in bioinformatics or computational biology and/or experience in developing NGS pipelines in a commercial or high-throughput genomics environment. We are a science-based SME with a bright future. We have an exciting scale up plan backed by ambitious and supportive investors and…

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Booz Allen Hamilton hiring Bioinformatics Specialist in Atlanta, GA

Job Number: R0182249Bioinformatics Specialist The Challenge: Are you excited at the prospect of unlocking the secrets held by a data set? Are you fascinated by the possibilities presented by the IoT, machine learning, and artificial intelligence advances? In an increasingly connected world, massive amounts of structured and unstructured data open…

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Insight Global hiring Bioinformatics Engineer in New York, NY

Job Title: Bioinformatics Engineer Company: Memorial Sloan Kettering Cancer Center – Transformational Research Team within the Center for Molecular Oncology Duration: 12-month – contract Location: Hybrid onsite 2 days a week in NYC at 321 E 61st Street Pay Rate: $62-65 (flexible) Must-haves 5-7 years of experience as a Bioinformatics…

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molkart: Output

Introduction This document describes the output produced by the pipeline. Most of the plots are taken from the MultiQC report, which summarises results at the end of the pipeline. The directories listed below will be created in the results directory after the pipeline has finished. All paths are relative to…

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Merge fastq files across different lanes in Nextflow

Hello, I’m trying to concatenate fastq files using Nextflow but I noticed that it doesn’t seem to work the way I wanted it to be. I saw this post (Merge fastq files ) and basically copied it off. nextflow.enable.dsl=2 def getLibraryId( prefix ){ // fastqfile = ABC-S16_L001_R1_001.fastq.gz, ABC-S16_L002_R1_001.fastq.gz prefix.split(“_”)[0] }…

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BioSpace hiring Advisor/Sr. Advisor – Bioinformatics in Cambridge, MA

At Lilly, we unite caring with discovery to make life better for people around the world. We are a global healthcare leader headquartered in Indianapolis, Indiana. Our 35,000 employees around the world work to discover and bring life-changing medicines to those who need them, improve the understanding and management of…

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BioSpace hiring Scientist, Bioinformatics Engineer in South San Francisco, California, United States

The Genomics Research Center (GRC) is a center of excellence for genetics and genomics that supports both Discovery and Development. The GRC plays an integral role towards our goal of developing extraordinary genetics and genomics research, focusing on finding the right targets and helping us better understand not only human…

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Broad Institute of MIT and Harvard hiring Principal Bioinformatics Engineer in Cambridge, Massachusetts, United States

Job DescriptionThe Cancer Data Science (CDS) team at the Broad (www.cancerdatascience.org/) is an interdisciplinary group dedicated to accelerating cancer research. We help design and analyze large-scale experiments, develop new statistical tools and machine learning methods, write papers, produce datasets used by tens of thousands of researchers around the world, and…

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MUSC College of Health Professions hiring UNIV – Research Specialist III- Bioinformatician – Department of Neuroscience in Charleston, South Carolina, United States

Job Description SummaryThe brand-new MUSC Bioinformatics Core (BioCM) is seeking a superb bioinformatician to develop scientific tools for single cell multiomics and other next-generation sequencing methods. Under the supervision and guidance of BioCM staff and Dr. Stefano Berto, the bioinformatician will contribute to NGS analysis projects, and they will work…

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Bioinformatics Data Engineer

Are you a talented Data Engineer with a passion for advancing the field of bioinformatics? We are seeking a skilled individual to join our team working on an innovative discovery platform, known as KnetMiner. KnetMiner transforms the integration of genomics, genetics, literature information into comprehensive knowledge graphs, empowering researchers with…

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Amplifybio, LLC Sr./Scientist, Bioinformatics in South San Francisco, CA | 876106342

Are you passionate about significantly improving the future of medicine? Do you believe that people are the most important asset of any company? If so, join AmplifyBio! AmplifyBio is a company dedicated to building an integrated environment where clients can access technologies, platforms, capabilities and safety testing for the scale…

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Exact Sciences hiring Senior Director, Bioinformatics in San Diego, California, United States

Position OverviewSenior Director, Bioinformatics will lead a team of Bioinformatics Scientists and Engineers in high-dimensional genomics data analysis, method development, and pipeline prototyping to ensure the accurate detection of biological signal(s) and successful and timely completion of large and complex multi-omics cancer liquid biopsy product development. The Sr Director, Bioinformatics…

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Scribe Therapeutics hiring Scientist II/Sr. Scientist, Bioinformatics in Alameda, California, United States

Scribe Therapeutics is a molecular engineering company focused on creating best-in-class in vivo therapies that permanently treat the underlying cause of disease. Founded by CRISPR inventors and leading molecular engineers Benjamin Oakes, Brett Staahl, David Savage, and Jennifer Doudna, Scribe is overcoming the limitations of current genome editing technologies by…

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linux – Error code 140 in command running through Nextflow on SLURM

[Note: question heavily edited to correspond to the actual problem] I’m trying to debug a command that fails only in specific conditions. The failure is with an exitcode 140, but I have no other information. This command is cat in_file | tr “\t” “\n” > out_file, and it is part…

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Velsera to Showcase Seven Bridges Bioinformatics Platform at BioTechX Europe

Featured presentations highlight how Seven Bridges delivers flexibility, compatibility and collaboration in support of key initiatives like AI/ML in drug discovery and neoantigen research BOSTON–(BUSINESS WIRE)–#AI–Velsera, a global healthcare technology company offering a universal software platform to connect clinical care with discovery, is proud to announce its title sponsorship at…

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Senior Bioinformatics Scientist – Jobs South Africa

Location Not specified, Full Time Deadline: Not specified Position summaryAs a Senior Bioinformatics Scientist, you will provide bioinformatics support for product research and development, as well as the marketing, sales and on-market product support teams. You will collaborate and innovate with bioinformatics scientists, software engineers and  molecular biologists to build…

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Moderna hiring Engineer I, Bioinformatics in Cambridge, Massachusetts, United States

The RoleThe Engineer I, Bioinformatics will develop computational protein engineering and bioinformatics pipelines and implement novel algorithms internally to support the Research and Early Development efforts for cancer vaccine related programs. You will work closely with computational scientists, bioinformaticians, statisticians, engineers and laboratory scientists within Oncology and cancer therapeutics teams…

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Online Training – Bioinformatics Pipeline Development with Nextflow (November 15-17, 2023)

News:Online Training – Bioinformatics Pipeline Development with Nextflow (November 15-17, 2023) 0 Bioinformatics Pipeline Development with Nextflow How to manage your own data analysis pipelines using workflow management systems When? November 15-17, 2023 Where? Online Link? Website Streamline your research through the development of reproducible analysis pipelines In a nutshell…

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BIOINFORMATIC TECHNICAL STAFF | EURAXESS

EL INSTITUTO DE INVESTIGACIONES BIOMÉDICAS DE MÁLAGA NECESITA CONTRATAR UN PROFESIONAL CON EL SIGUIENTE PERFIL:  PERSONAL TÉCNICO EN BIOINFORMÁTICA Investigadora principal:  Nuria Ribelles Entrena Lugar:  Oncología Médica UGCI Grupo de investigación:  CIMO-01 Línea de investigación  : Investigación clínica traslacional en cánceres de mama, próstata, ginecológico, digestivo y germinal. Funciones a…

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Evvy hiring Senior Bioinformatics Scientist in New York, NY

As the founding Bioinformatics Scientist at Evvy, you’ll have the opportunity to help build the data platform that will pioneer precision female healthcare.  We are seeking a Bioinformatics Scientist with deep expertise in computational analyses of the microbiome. Evvy has built the world’s largest dataset on the vaginal microbiome combining…

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Introduction to Nextflow (2 seats left)

News:Introduction to Nextflow (2 seats left) 0 ear all, We are excited to inform you that there are only 2 seats remaining for the upcoming “Introduction to Nextflow” workshop, which will be conducted online next week on September 25th and 26th. This comprehensive 2-day course is designed to equip participants…

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Error executing process > consensus_classification in NanoCLUST

Error executing process > consensus_classification in NanoCLUST 1 Hello, I’m trying to run NanoCLUST with my 16S sequence data. I run it on a Linux ubuntu 20.04 machine. When I use the command: nextflow run main.nf -profile docker –reads “*.fastq” –db “db/16S_ribosomal_RNA” –tax “db/taxdb/” I get the following terminal output:…

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Scientist, Bioinformatics Engineer – South San Francisco

The Genomics Research Center (GRC) is a center of excellence for genetics and genomics that supports both Discovery and Development. The GRC plays an integral role towards our goal of developing extraordinary genetics and genomics research, focusing on finding the right targets and helping us better understand not only human…

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Actalent hiring Bioinformatics Analyst III in Illinois, United States

DescriptionPosition Title: Sr. Bioinformatics AnalystNumber of Positions Needed: 1Length of Contract: 1yrLocation/Site: Lake CountyRemote, 100% Onsite, or Hybrid Onsite Schedule: FlexibleThe Genomics Research Center (GRC) is a center of excellence for genetics and genomics that supports both Discovery and Development. The GRC plays an integral role towards our goal of…

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sarek: Introduction

Introduction nf-core/sarek is a workflow designed to detect variants on whole genome or targeted sequencing data. Initially designed for Human, and Mouse, it can work on any species with a reference genome. Sarek can also handle tumour / normal pairs and could include additional relapses. The pipeline is built using…

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BiocMAP: a Bioconductor-friendly, GPU-accelerated pipeline for bisulfite-sequencing data

Background: Bisulfite sequencing is a powerful tool for profiling genomic methylation, an epigenetic modification critical in the understanding of cancer, psychiatric disorders, and many other conditions. Raw data generated by whole genome bisulfite sequencing (WGBS) requires several computational steps before it is ready for statistical analysis, and particular care is…

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A list of technical advantages of Snakemake over Nextflow

Blog:A list of technical advantages of Snakemake over Nextflow | Cloud solution for Snakemake 0 To summarize: Python is the lingua franca of bioinformatics Nextflow’s DSL is overbearing and inconsistently uses Groovy Nextflow channels / tuples lack static type checking and prevent code reuse Snakemake is easier to debug (line…

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Postdoctoral Scientist – (Meta-)genomics Bioinformatics

Postdoctoral Scientist – (Meta-)genomics Bioinformatics VIB Ghent, Belgium Description The VIB-UGent Center for Medical Biotechnology is hiring an enthusiastic postdoctoral scientist to develop and implement data analysis workflows for (meta)genomics data analyses, in the context of the Horizon Europe ODIN project on environmental surveillance of pathogens. This position is part…

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BiocMAP: a Bioconductor-friendly, GPU-accelerated pipeline for bisulfite-sequencing data | BMC Bioinformatics

Overview In the first alignment module, FASTQ files are checked with FastQC 0.11.8 [15], and by default samples that fail the “Adapter Content” metric are trimmed using Trim Galore! 0.6.6 [16] (see Methods: Configuration for alternative trimming options). The resulting FASTQ files are aligned to a reference genome using the…

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Roche hiring Principal Scientist I Bioinformatics in Mississauga, Ontario, Canada

The PositionRoche Sequencing Solutions (RSS), a business within Roche Diagnostics, focused on developing a disruptive Next-Generation Sequencing (NGS) platform along with a portfolio of reagents, assays and informatics solutions for multiple disease areas. We are looking for a Principal Bioinformatics Scientist in the NGS Algorithms and Applications team to support…

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How to pass the yml format input file from an argument to channel as a list

Nextflow – How to pass the yml format input file from an argument to channel as a list 0 How to pass the yml format input file from an argument to channel samples as a list? Appreciate if any nextflow function or simple solution to make the channel samples works!…

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Senior Bioinformatics Scientist – England

Job Description Role: Senior Bioinformatics Scientist Opportunity to join a World Class clinical stage Biotech, focused within the oncology space as a Senior Bioinformatician. Responsibilities: Involved in experimental design of new datasets being generated. To develop, deploy and document software for the automation of processing, quality control and dissemination of…

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SPECTRAFORCE hiring Bioinformatics analyst in Chicago, IL

Job title: Bioinformatics analystLocation: Remote (Remote, 100% Onsite, or Hybrid Onsite Schedule: Flexible)Duration: 12 months Pay Range: $53 – $56/hr The Genomics Research Center (GRC) is a center of excellence for genetics and genomics that supports both Discovery and Development. The GRC plays an integral role towards our goal of…

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Orion Group hiring Senior Bioinformatics Analyst in United States

Location: Remote Contract Length: 12-months Pay Rate: $52 – $57 Senior Bioinformatics Analyst The Genomics Research Center (GRC) is a center of excellence for genetics and genomics that supports both Discovery and Development. The GRC plays an integral role towards our goal of developing extraordinary genetics and genomics research, focusing…

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Director, Bioinformatics – Richmond | Mendeley Careers

Title: Director, Bioinformatics Manager: VP, Bioinformatics Department: ResearchLocation: Richmond / Remote Sangamo Therapeutics is a genomic medicine company building value with cutting-edge work across four distinct but complementary technology platforms – gene therapy, cell therapy, in vivo genome editing, and in vivo genome regulation. Using its deep scientific expertise and…

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Research Assistant Job in Bioinformatics and Metapangenomics at The Swedish University of Agricultural Sciences in Sweden

The Department of Aquatic Sciences and Assessment is working with applied environmental science, with a national responsibility for assessing the condition of Swedish surface waters with respect to water chemistry, pollution and aquatic biota. The department has about 140 employees. The research focuses on geochemical and hydrological processes, aquatic…

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Bioinformatics Intern – HaystackAnalytics | Mumbai, Maharashtra

HaystackAnalytics is a company working in deep technology of genomics, computing, and data science for creating the first of its kind clinical reporting engine in healthcare. We are a new but well- funded company with a tremendous amount of pedigree in the team (IIT Founders, IIT & IIM core team)….

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Research Assistant – Bioinformatics and Metapangenomics – SLU

Research Assistant – Bioinformatics and Metapangenomics SLU – Swedish University of Agricultural Sciences Uppsala, Sweden Department of Aquatic Sciences and Assessment The Department of Aquatic Sciences and Assessment is working with applied environmental science, with a national responsibility for assessing the condition of Swedish surface waters with respect to water…

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Postdoctoral Fellow, Virology job with UNIVERSITY OF NEW SOUTH WALES

Employment Type: Full – time (35 hours a week) Duration: 1-Year Fixed Term contract (with possible 2-year extension) Remuneration: Up to $106,337 p.a. (+17% super and leave loading) Location: Prince of Wales Hospital, Randwick, NSW Why this role matters: The Post-Doctoral Fellow will contribute to research projects within the UNSW-affiliated…

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i am having trouble with the VIBRANT embedded in Viroprofiler

Hi, I am trying to run the Viroprofiler, the new program to analyze viral metagenome data. Since the Viroprofiler encompasses multiple programs to run them all at once, I am facing error message after error message while running the command. While I was running my command as suggested, $nextflow run…

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Change mounted drive on GCP Batch nextflow process

I’ve been trying to download and index databases to add to a GCP bucket that I will use as a database to be queried through the fusion file system using nextflow. However, I keep getting errors with the download process. Here is the filesystem of the process: Filesystem Type Size…

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Bioinformatics Engineer – Tufts University

Overview Tufts Technology Services (TTS) is a university-wide service organization committed to delivering technology solutions in support of Tufts’ mission of teaching, learning, research, innovation, and sustainability. With staff across all of Tufts’ campuses, as well as a 24×7 IT Service Desk, we collaborate with schools and divisions to meet…

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Bioinformatics Analyst III job with University of Florida

Bioinformatics Analyst III Job No: 526592Work Type: Staff Full-TimeLocation: Main Campus (Gainesville, FL)Categories: Biology/Life Science, Computer Science, Information Technology, Artificial Intelligence, Engineering, Physical/Mathematical SciencesDepartment: 29240101 – MD-HOBI-GENERAL Job Description Classification Title: Bioinformatics Analyst III Job Description: The Biomedical Informatics Program (BMI), hosted within the Department of Health Outcomes and Biomedical…

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scrnaseq: Introduction

Introduction nf-core/scrnaseq is a bioinformatics best-practice analysis pipeline for processing 10x Genomics single-cell RNA-seq data. This is a community effort in building a pipeline capable to support: Alevin-Fry + AlevinQC STARSolo Kallisto + BUStools Cellranger UniverSC Documentation The nf-core/scrnaseq pipeline comes with documentation about the pipeline usage, parameters and output….

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Bioinformatics Developer – Hinxton, United Kingdom – European Molecular Biology Laboratory (EMBL)

Description About the team/job We are seeking a highly motivated and skilled Bioinformatics Developer to join the InterPro team, which is part of the Sequence Family Resources led by Alex Bateman. InterPro is a core protein data resource that plays a vital role in the classification of protein domains and…

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IQVIA hiring Clinical Bioinformatics Scientist in Durham, North Carolina, United States

IQVIA is seeking a highly creative, passionate, and motivated individual to join us to design, development and implementation of statistical, bioinformatics, and machine learning methods that integrate large multi-modal datasets to derive quantitative biological insights that support clinical development, translation of clinical findings, and other business decision-making. The candidate should…

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Error executing nf-core/metaboigniter pipeline

Error executing nf-core/metaboigniter pipeline 0 I ran this command: export NXF_VER=22.10.8; nextflow run nf-core/metaboigniter -profile test The error obtained: Error executing process > ‘get_software_versions’ Caused by: Process `get_software_versions` terminated with an error exit status (127) Command executed: echo 1.0.1 > v_pipeline.txt echo 22.10.8 > v_nextflow.txt Rscript -e “cat(as.character(packageVersion(‘CAMERA’)),’\n’)” &> v_camera.txt…

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GCP vertex AI errors

GCP vertex AI errors 0 I am trying to deploy colabfold on GCP. Currently I’m using the solution GCP previewed from this repo. After getting past a few initial errors, I am now trying to submit up to 350 small fasta files for analysis. But so far none of the…

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absolute file path gets concatenated?

Nextflow: absolute file path gets concatenated? 0 I am writing a nextflow workflow in DSL2 and running in the scratch directory of a HPC server. The process create_list has a simple goal: I would like to write a tsv file with two columns from an inputdir. The first column contains…

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Senior Bioinformatics Software Engineer – St. Jude Children's Research Hospital

The Center for Applied Bioinformatics (CAB) at the St. Jude Children’s Research Hospital (SJCRH) is seeking a creative Software Engineer with a strong background in bioinformatics to join our development team to create and maintain our vital analytical infrastructure. The new hire will work closely with a team of computer…

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Advisor/Sr. Advisor – Bioinformatics job in Cambridge at Lilly Company

At Lilly, we unite caring with discovery to make life better for people around the world. We are a global healthcare leader headquartered in Indianapolis, Indiana. Our 35,000 employees around the world work to discover and bring life-changing medicines to those who need them, improve the understanding and management of…

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Massachusetts General Hospital hiring Bioinformatics Specialist I in Boston, MA

General Summary & Overview StatementThe Iafrate Lab conducts pioneering research in the field of clinical genomics, working to develop personalized approaches to early cancer detection, diagnosis, and therapy. We are seeking a highly motivated bioinformatician with a background in statistics and/or software development to be a part of our team…

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Pipeline Generator

Tool:Pipeline Generator 0 Hey everyone, We launched a new standalone service to help start the bioinformatics pipeline generation. It supports some popular pipelines like RNA-Seq, ATAC, scRNA, & CHiP and workflow managers like SLURM, Nextflow, & Snakemake. You can check it out here: ai.tinybio.cloud/pipeline-generator As always – feel free to…

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Research Scientist 5 (Bioinformatics Scientific Core) in Albany, NY for NYS Department of Health, Wadsworth Center

Details Posted: 14-Aug-23 Location: Albany, New York Type: Full Time Categories: Allied Health Laboratory Public Health Sector: Government Required Education: Doctorate Internal Number: NMH/RS5/12325 Combining laboratory testing and computer science, the Wadsworth Center’s Bioinformatics Core facility provides a variety of data analysis services on laboratory data. Recognizing the ever-expanding contributions…

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Principal Scientist II Bioinformatics – Hiring Now at F. Hoffmann-La Roche Ltd in Mississauga, ON

We are searching for a persistent Principal Scientist II Bioinformatics to join our energetic team at F. Hoffmann-La Roche Ltd in Mississauga, ON.Growing your career as a Full Time Principal Scientist II Bioinformatics is an incredible opportunity to develop key skills.If you are strong in leadership, critical thinking and have…

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Research Assistant – Bioinformatics, School of Mathematical and Statistical Sciences (University of Galway 190-23) – County Galway

Job Description: This post is based in the Ó Broin lab (Duties: Contribute to the design and development of database and/or web application components of cancer genomics projects. Contribute to the dissemination of research in the form of e.g., reports, papers, chapters, book chapters. Engage in Education and Public Engagement (EPE)…

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Moderna hiring Associate Bioinformatics Engineer in Cambridge, Massachusetts, United States

The RoleIn this role, you will develop computational protein engineering and bioinformatics pipelines and implement novel algorithms internally to support the Research and Early Development efforts for cancer vaccine related programs. You will work closely with computational scientists, bioinformaticians, statisticians, engineers and laboratory scientists within Oncology and cancer therapeutics teams…

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Bioinformatician jobs in Marshfield, WI

Skip to main contentThe Muse LogoA logo with &quat;the muse&quat; in dark blue text. All Filters Company Filters Company IndustryCompany SizePerks and BenefitsDiversity & Inclusion View 29 Results Bioinformatician Posted on Data Scientist / Bioinformatician, Biologics R&D Posted on mRNA – Bioinformatician Scientist – All Gender Posted on Senior Crop…

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