Tag: pairwise2

There are gaps where mismatches should be in pairwise alignment (Biopython-pairwise2)

There are gaps where mismatches should be in pairwise alignment (Biopython-pairwise2) 1 Hi! I’m trying to do a pairwise alignment. As I explained in my previous post, I’m trying to filter the sequences by their alignment scores or end values. However, there is one thing that I can not understand…

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[biopython/biopython] local pairwise alignment using pairwise2

Setup I am reporting a problem with Biopython version, Python version, and operating system as follows: 3.6.13 | packaged by conda-forge | (default, Feb 19 2021, 05:36:01) [GCC 9.3.0] CPython Linux-5.11.0-41-generic-x86_64-with-debian-bullseye-sid 1.78 # also tested on windows-subsystem 3.9.7 (default, Sep 16 2021, 13:09:58) [GCC 7.5.0] CPython Linux-5.10.16.3-microsoft-standard-WSL2-x86_64-with-glibc2.31 1.78 Expected behaviour…

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Find most similar peptide and calculate distance?

Find most similar peptide and calculate distance? 0 Hello! I have mutant and wild peptide. I select some short subpeptide containing mutation and i want to find the most similar subpeptide (preferably of the same length) in the wild peptide to compare its immunological properties to the mutant one. And…

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