Tag: PASS
Spring Boot Swagger documentation using OpenAPI
Rich API documentation is a vital element of any successful project, especially if it has to be integrated by third parties. Unfortunately, Spring Boot does not have an out-of-the-box solution for Swagger documentation. So we must use a third-party library (Springdoc-openapi) for that purpose. In this article, we cover how…
ctDNA Tumor Fraction Retains Strong Prognostic Value for Advanced NSCLC
A version of this article originally appeared on Pharmacy Times. This version has been lightly edited. In the phase 2 UNICANCER SAFIR02-Lung/IFCT1301 trial (NCT02117167) investigating the association of circulating tumor DNA (ctDNA) tumor fraction (TF) with survival in patients with advanced non-small cell lung cancer (NSCLC) administered maintenance durvalumab (Imfinzi),…
Inside Google DeepMind’s approach to AI safety
This article features an interview with Lila Ibrahim, COO of Google DeepMind. Ibrahim will be speaking at TNW Conference, which takes place on June 15 & 16 in Amsterdam. If you want to experience the event (and say hi to our editorial team!), we’ve got something special for our loyal…
Scientists discover the first virgin birth in a crocodile
Editor’s note: Sign up for CNN’s Wonder Theory science newsletter. Explore the universe with news on fascinating discoveries, scientific advancements and more. CNN — Scientists say they have documented the first virgin birth in a crocodile. And while the concept may sound bizarre to humans, this type of reproduction is…
Major construction continues the Soo Locks
SAULT STE. MARIE, Mich. (WLUC) – The U.S. Army Corps of Engineers New Lock at the Soo project remains on schedule as major construction continues with phases 2 and 3 this season. Contractors Kokosing-Alberici have a busy construction season ahead of them as they work on phase 2 of the…
Fanconi Anemia Market to see Huge Growth by 2031
PRESS RELEASE Published June 9, 2023 The Latest Research Report on Fanconi Anemia Market 2023 covering the micro level of analysis by competitors and key business segments. The Global Fanconi Anemia explores an inclusive study on various segments like growth drivers, opportunities, market size, shares, development, innovation, sales, and overall…
MBA In Bioinformatics Jobs
MBA in Bioinformatics permits the scholars to analyze the utility of automatic know-how in accumulating and class of organic molecular genetics and genomes statistics for in addition processing and studies analysis. The applicants actively find out how useful the garage of this touchy statistics can cause undertaking of most important…
A question about the raw RNA-seq processing workflow
“Hello, I am a student who recently started studying bioinformatics. Since my understanding is still limited, I would appreciate it if you could explain even if the difficulty of the question is low. I am currently working with RNA-seq data and I am facing batch effects that are not reduced…
Full Form, Courses, Top Colleges, Syllabus, Admission, Fees, Jobs 2023-24
MBA in Bioinformatics permits the scholars to analyze the utility of automatic know-how in accumulating and class of organic molecular genetics and genomes statistics for in addition processing and studies analysis. The applicants actively find out how useful the garage of this touchy statistics can cause undertaking of most important…
Nucleosome Patterns in Circulating Tumor DNA Reveal Transcriptional Regulation of Advanced Prostate Cancer Phenotypes
Read the Full Video Transcript Andrea Miyahira: Welcome. I’m Andrea Miyahira and I’m the senior director of Global Research and Scientific Communications at the Prostate Cancer Foundation. Today I’m joined by Dr. Gavin Ha, an assistant professor at Fred Hutchinson Cancer Center and the PCF 2019 Young Investigator. Dr. Ha’s…
ayinkellc/otito-php – Packagist
For more information, please visit otito.dev. Installation & Usage Requirements PHP 7.4 and later. Should also work with PHP 8.0. Composer To install the bindings via Composer, add the following to composer.json: composer require ayinkellc/otito-php Then run composer install Getting Started Please follow the installation procedure and then run the…
Applying ResNet on CIFAR10 after Resizing PyTorch
In the world of computer vision image classification is an important task that involves assigning a label to an image based on its content One of the most commonly used datasets for image classification is the CIFAR10 dataset which consists of 60000 32×32 color images in 10 classes The ResNet…
Multiprocessing in Python and PyTorch
Multiprocessing is a technique in computer science by which a computer can perform multiple tasks or processes simultaneously using a multi-core CPU or multiple GPUs. It is a type of parallel processing in which a program is divided into smaller jobs that can be carried out simultaneously. The program is…
Refactoring My PyTorch Hyperparameter Search Using Evolutionary Optimization Demo
One of the advantages that experienced developers have compared to early-career developers is subjective intuition. Several days ago, I implemented a program that searches for PyTorch neural network hyperparameter values (number of hidden nodes, batch size, and so on) using an evolutionary optimization algorithm. The demo worked but my intuition…
Japan ruling on same sex marriage disappoints but a step forward
A Japanese court on Thursday said a ban on same-sex marriage was constitutional but raised concerns about the dignity and human rights of same-sex couples, a ruling short of activists’ expectations but still seen as a step forward. The ruling by the Fukuoka district court came a week after another…
Can This Gene-Editing Stock Deliver 10X Returns?
Not many stocks are truly capable of generating a 1,000% return on investment within a reasonable time frame. Even so, a fair number of next-generation technology stocks have hit this lofty milestone over the years. In almost every case, the market woefully underestimated the company’s core value proposition ahead of…
Biomarker Testing Services Market Size To See Booming Growth
PRESS RELEASE Published June 8, 2023 The most recent study conducted by Report Ocean, titled “Global Biomarker Testing Services Market Size, Share, Pricing, Trends, Growth, Report and Forecast 2023-2030,” presents a comprehensive analysis of the worldwide market. This research delves into the factors driving the market, emerging trends, opportunities for…
nlp – PyTorch CUDA – .to(device) for Text
I’m trying to get my PyTorch model to be completely running on my GPU; however, I’ve ran into an issue and I’m unsure how to solve this. Right now I have a set of image text pairs that I want to feed into a CLIP transformer; however, usually what I…
Programming Processors In Heterogeneous Architectures
Programming processors is becoming more complicated as more and different types of processing elements are included in the same architecture. While systems architects may revel in the number of options available for improving power, performance, and area, the challenge of programming functionality and making it all work together is turning…
Asking for feedback on a Python library for computing alignments
I want to point out another implementation that has Python bindings, parasail: github.com/jeffdaily/parasail Other comments Installation Information is severely lacking, I had to figure out myself what needs to be installed using mamba, it was quite annoying to get it to compile, the setup.py is not listing and reporting the…
New Zealand Must Improve Biosecurity to Avoid Pest Threats
Climate change is increasing the risk of plant-destroying insects, diseases and invasive weeds entering Aotearoa New Zealand. Border security is not enough to protect us from the next biosecurity threat – it’s time to be proactive in preventing the risks. As New Zealanders, our natural world is important for our…
Print PyTorch Model Summary using torchinfo
When working with complex PyTorch models, it’s important to understand the model’s structure, such as the number of parameters and the shapes of input and output on each layer. This information can help for debugging issues and optimizing the model. One of the ways to obtain a comprehensive summary of…
Metagenomics Market Size Boosting The Growth Worldwide
PRESS RELEASE Published June 7, 2023 The most recent study conducted by Report Ocean, titled “Global Metagenomics Market Size, Share, Pricing, Trends, Growth, Report and Forecast 2023-2030,” presents a comprehensive analysis of the worldwide market. This research delves into the factors driving the market, emerging trends, opportunities for development, as…
Reading same BAM file twice with htslib
I would like to read iteratively the same BAM file twice using htslib. My option is to use hts_open, sam_hdr_read, then sam_read1 as much as needed to read the file until EOF. Is there a possibility to “rewind”, and use sam_read1 again from the beginning of the file, without closing…
A Short History of Virology
This article is pulled from the 15 day Troubles Away program of short videos and games designed to remove troubles from your life. Considering recent global events does a short history of virology support the central insight of Troubles Away, namely that troubles appear when we believe in something that…
Bioinformatics Scientist – Weems Design Studio Inc
We are seeking a Bioinformatics Scientist to join the team at the National Institutes of Heath’s Center for Immuno-Oncology (CIO). This is a Federal Government Contractor position and the candidate must be able to pass a background check. Responsibilities: Perform computational analysis, integration, and modeling of diverse data sets, to…
Global Genome Sequencing Equipment/Systems market
Global Genome Sequencing Equipment/Systems Market Size, Share, Growth, and Trend Analysis (2023 – 2030) According to the report published by Virtue Market Research , In 2022, the Global Genome Sequencing Equipment/Systems market was valued at $13.34 billion, and is projected to reach a market size of $31.41 billion by 2030….
An Open-Source Virtual Reality System for the Measurement of Spatial Learning in Head-Restrained Mice
Here, we present a simplified open-source hardware and software setup for investigating mouse spatial learning using virtual reality (VR). This system displays a virtual linear track to a head-restrained mouse running on a wheel by utilizing a network of microcontrollers and a single-board computer running an easy-to-use Python graphical software…
Answer: [Meta] Use of AI
As you indicate, AI in some form or other is here to stay and we can’t avoid it in our lives and on biostars. Main issue I see is the validation of information. If an answer is AI assisted (and code related things fit in this category well) but not…
Exploring the Global Radio Headset Market and its Role in Enhancing Efficiency and Safety
PRESS RELEASE Published June 2, 2023 As per the study initiated by Evolve Business Intelligence, the global Radio Headset market size accounted for USD 4.5 Billion in 2022, growing at a CAGR of 6.1% from 2023 to 2033. Radio headsets are designed to provide reliable and efficient communication in demanding…
Low-pass whole genome sequencing is a reliable and cost-effective approach for copy number variant analysis in the clinical setting
ABSTRACT We evaluated the performance of low-pass whole genome sequencing (LP-WGS) to detect copy number variants (CNVs) in clinical cytogenetics. DNA samples with known CNVs detected by chromosomal microarray analyses (CMA) were selected for comparison; our panel included 44 DNA samples (12 prenatal and 32 postnatal), comprising a total of…
Enhancing the simulation performance for inhomogeneous systems such as droplets – Developers discussions
Hi, I have run into a performance issue when simulating water vapor systems as e.g. a single ~100,000 atom TIP3P water droplet in vacuum. As such, the ~30,000 water molecules fit into a box of approx 10 x 10 x 10 nm. I place this initial water cube centered into…
Tumor Fraction Retains Strong Prognostic Value for Advanced Non-small Cell Lung Cancer
In the phase 2 UNICANCER SAFIR02-Lung/IFCT1301 trial (SAFIR02-Lung; NCT02117167) investigating the association of circulating tumor DNA (ctDNA) tumor fraction (TF) with survival in patients with advanced non-small cell lung cancer (NSCLC) administered maintenance durvalumab (Imfinzi; AstraZeneca), TF was positive in 16% of patients, explained Filippo Gustavo Dall’Olio, MD, during a…
The global market is expected to grow at a CAGR of 5.9% during the forecasted period.
PRESS RELEASE Published June 2, 2023 As per the study initiated by Evolve Business Intelligence, the global DNA Sequencing Electrophoresis System Market size accounted for USD 3.2 Billion in 2022, growing at a CAGR of 5.9% from 2023 to 2033. The DNA sequencing electrophoresis system market refers to the industry…
60+ Open APIs tried, tested and de-risked – Historic table
Account Management API [Historic] Provides standardized mechanism for the management of billing and settlement accounts, as well as for financial accounting (account receivable) either in B2B or B2B2C contexts Business Partner, Customer TMF666 v2.0.0 01-Feb-18 No notes Agreement Management API [Historic] The Agreement API provides a standardized mechanism for managing…
python – How to start from example diverging REST interface?
In the uvicorn exmaple, one writes uvicorn filename:attributename and by that start the server. However, the interface I have generated has no such method attributename in filename. Therefore, I am unsure what to pass as attributename. “”” Somename Specification for REST-API of somename. The version of the OpenAPI document: 1.0.0…
bcftools “–filter-logic” flag, what + means?
bcftools “–filter-logic” flag, what + means? 1 Hi, There is a flag in bcftools, which takes care of FILTER field during merge of several vcf files: -F, –filter-logic x|+ Set the output record to PASS if any of the inputs is PASS (x), or apply all filters (+), which is…
Named Server and unique Workdirectories – JupyterHub
Is there somehow possible to define individual working directories for each named server?(e.g. /home/jupyter-USERNAME/Servername/) The background is that I would like to use a named server for each project I am working on and only have access to the data for this project. Currently, all Named Servers use the same…
SageMaker PyTorch Endpoint: NVMLError(NVML_ERROR_FUNCTION_NOT_FOUND) | AWS re:Post
Hi, I wanted to raise awareness on this (please direct me if this is not the place to do so). I created a SageMaker endpoint and pass an image through the endpoint. It causes the error I’ve attached below. I’ve attached the CloudWatch image which indicates a function is missing…
Get gradient of quantum circuit with PyTorch interface – PennyLane Help
Hello! I’m trying to get the gradient values of my quantum circuit to do a Barren Plateaus analysis. I am following the following tutorial: Barren plateaus in quantum neural networks — PennyLane documentation. However, I am using the torch interface, and I am running into a TypeError when I just…
At Illumina, Breaking Down Barriers to Democratize Genomics
In 1998, DNA sequencing and array-based technology provider Illumina launched with the mission of improving human health by unlocking the power of the genome—a bold vision considering the scientific community was still five years away from generating the first sequence of the human genome. That accomplishment, ultimately achieved through a…
siRNA as a COVID-19 Treatment
Researchers at UMass Chan Medical School have developed a small interfering RNA (siRNA) technology that is stable enough for inhalation into the lungs, where it can potentially treat diseases as diverse as asthma, pulmonary fibrosis, and viral infections such as COVID-19. siRNA is not typically stable enough to survive for…
gatk Hardfilter Error
gatk Hardfilter Error 0 Hello, I run the code but I got the Error. Could you pls help me with this issue? How can I fix it? gatk VariantFiltration -R reference. fasta -V input.vcf –filter-expression “FILTER == ‘PASS’ && (QUAL < 30.0 || QD < 2.0 || FS > 60.0…
A Powerful Tool for Audio Generation
Soundstorm-Pytorch is a powerful tool for audio generation. It is a PyTorch implementation of Google Deepmind’s efficient parallel audio generation method. Soundstorm-Pytorch can be used to generate high-quality audio faster and more consistently than the autoregressive approach of AudioLM. It can also synthesize natural dialogue segments from a transcript with…
How Will Your Post Graduate Diploma In Bioinformatics Get You Hired In 2023-24 ?
Post Graduate Diploma in Bioinformatics is a one-year degree that examines the combination of biology and computer science and deals with the collection, storage, analysis, and distribution of biological data. The Post Graduate Diploma in Bioinformatics course combines biology and informatics for application in the fields of medicine and biology….
Top Job Profiles In Post Graduate Diploma In Bioinformatics
Post Graduate Diploma in Bioinformatics is a one-year degree that examines the combination of biology and computer science and deals with the collection, storage, analysis, and distribution of biological data. The Post Graduate Diploma in Bioinformatics course combines biology and informatics for application in the fields of medicine and biology….
Jupyterhub file browser folders disappear constantly – JupyterHub
Description JupyterHub has been installed on ubuntu 22.04 and connected to the active directory with sssd. A user account will automatically be created when a windows user logs onto the jupyterhub. A symbolic link will automatically be made from the user home folder tot the mounted volume. The mounted volume…
r – ggplot2 stacked column: How do I sort by date, use custom colors and change the legend?
Separately these seem easy, but I can only complete two of the requirements before breaking the third. What I want to do with a stacked column chart: Group by week and order the stacked bar chart with the earliest date (Thursday) on the bottom and the last date (Wed) on…
What American Technology Companies Are Thinking About AI
The way I see it, artificial intelligence (or AI), really leapt into the zeitgeist in late-2022 or early-2023 with the public introduction of DALL-E2 and ChatGPT. Both are provided by OpenAI and are software products that use AI to generate art and writing, respectively (and often at astounding quality). Since…
Research Fellow, Patrick G Johnston Centre for Cancer Research job with QUEENS UNIVERSITY BELFAST
Job Description: The School of Medicine, Dentistry & Biomedical Sciences (MDBS) at Queen’s University Belfast, is currently seeking to appoint an exceptional candidate to the post of Research Fellow within the Patrick G Johnston Centre for Cancer Research. BPCC Genomics and Bioinformatics Fellow”, has been funded as part of the…
autopkgtest regression due to new CMake warning
Source: boost1.81 Version: 1.81.0-5 Severity: normal —–BEGIN PGP SIGNED MESSAGE—– Hash: SHA512 Dear maintainer, starting with CMake 3.26, a new warning is issued if cmake_minimum_required() is not called before project(), as some policy settings affect the behavior of project(). Your package is affected: autopkgtest [23:01:45]: @@@@@@@@@@@@@@@@@@@@ summary atomic FAIL stderr: CMake Warning (dev) at…
How to filter vcf file on minimum genotype depth and quality for each sample
How can I filter a vcf filter a VCF file on minimum genotype depth and genotype quality for each sample. I am looking for a way to filter variants from a VCF file by checking that all samples for a site pass 2 critera sample.DP > 10 sample.GQ > 15…
Kecerdasan Buatan Google indopelita
Kecerdasan Buatan Google – Did you know that since 2011, Google has bought a research and development project called DeepMind? Accelerating the British R&D project, Google is reportedly hiring around 140 smart people from around the world. Since this project is strictly confidential, it’s a shame that Google doesn’t often…
Pfizer’s new Covid treatment approval
Programming note: We’ll be off this Monday for Memorial Day but will be back in your inboxes on Wednesday. The FDA granted full approval to Pfizer’s Paxlovid on Thursday. | Getty Images PAXLOVID FULLY APPROVED — The FDA on Thursday approved Covid-19 treatment Paxlovid for adults at high risk of…
Fermented Foods: Everything You Need To Know About These Gut-Friendly Products
Fermented foods and beverages, such as yogurt and kefir, are gaining popularity as non-pharmaceutical, health-enhancing agents. So, what exactly are these foods and why are they so good for your body? Fermentation refers to the slow decomposition of organic substances (foods) due to microorganisms, also called microbes. Microbes are the smallest…
Hundreds Attend Gene Editing Forum, Grapple with Tough Questions
Jennifer Doudna still remembers a moment that changed how she viewed her responsibilities as a scientist. Doudna, a professor of biochemistry at the University of California, Berkeley, was sitting in her office in 2014 when she opened a scientific article by a team of Chinese researchers. The group had used…
Christian Mills – Hands-On Hand Gesture Recognition: Fine-Tuning Image Classifiers with PyTorch and the timm library for Beginners
Introduction Welcome to this hands-on guide to fine-tuning image classifiers with PyTorch and the timm library! Fine-tuning refers to taking a pre-trained model and adjusting its parameters using a new dataset to enhance its performance on a specific task. We can leverage pre-trained models to achieve high performance even when…
Bioinformatics Analyst – Orion Group
Bioinformatics Analyst 3 month initial contract with a great possibility of extension. 100% remote position $57 – $60 per hour based on location (medical benefits included) Orion Group and our largest US client are in need of a fully remote Bioinformatics Analyst ASAP!!! Don’t pass on this amazing opportunity! Purpose:…
2023-05-25 | NYSE:ABBV | Press Release
NORTH CHICAGO, Ill., May 25, 2023 /PRNewswire/ — AbbVie (NYSE: ABBV) today announced the New England Journal of Medicine (NEJM) published results from the pivotal Phase 3 clinical trials – U-EXCEL, U-EXCEED and U-ENDURE – evaluating upadacitinib (RINVOQ®) in adult patients with moderately to severely active Crohn’s disease who have…
deep learning – Pytorch lightning callback for logging the activations
How can I create a PyTorch Lightning callback to log the activations of each layer in the Faster R-CNN model with ResNet50-FPN-v2? The existing solution I found breaks the training loop when moving data from CUDA to CPU. I’m currently working on an object detection project and using the Faster…
Things Phase 4 Did Perfectly
The one-two punch of Avengers: Infinity War and Avengers: Endgame firmly established the Marvel Cinematic Universe (MCU) as the biggest movie franchise in the world. What helped make the films among the biggest box-office hits ever is that they were the grand culmination of a decade’s worth of storytelling, as…
CUET UG 2023 Phase 3 Exam City Slip OUT on cuet.samarth.ac.in, check how to download
Image Source : INDIA TV CUET UG 2023 Phase 3 Exam City Slip released CUET UG 2023 Phase 3 Exam City Slip: The National Testing Agency (NTA) has finally released the third phase exam city intimation slip for Common University Entrance Test (CUET- UG) 2023. Candidates who are scheduled for…
javascript – Is it possible to pass an AxiosInstance to openapi-generator generated TypeScript classes?
How can i pass my AxiosInstance to classes generated by openapi-generator typescript-axios template? I tried change prototype of BaseAPI class, but it doesn’t work. And there are no places where i can pass my axios instance import { HotelsRestServiceApi, Configuration } from ‘../../generated/openapi’; import { BaseAPI } from ‘../../generated/openapi/base’; //Base…
Increase in Fetal Chromosomal Abnormalities Drives Growth
DUBLIN, May 24, 2023 /PRNewswire/ — The “Carrier Screening Global Market Report 2023” report has been added to ResearchAndMarkets.com’s offering. This report provides strategists, marketers and senior management with the critical information they need to assess the market. The global carrier screening market is expected to grow from $2.03 billion in…
Classification using PyTorch linear function
In machine learning, prediction is a critical component. It is the process of using a trained model to make predictions on new data. PyTorch is an open-source machine learning library that allows developers to build and train neural networks. One common use case in PyTorch is using linear classifiers for…
Twist Bioscience: Progress On Margins Could Put A Floor Under The Stock (NASDAQ:TWST)
byakkaya Twist’s (NASDAQ:TWST) stock has performed poorly in recent months on the back of soft growth and large losses. A headcount reduction and the opening of Twist’s new production facility should be supportive of growth and margins later in the year. Twist remains susceptible to a difficult macro environment in…
Major progress as scientists get brain tumors to self destruc
Researchers at the University of Gothenburg in Sweden, working with French colleagues, have successfully developed a method able to kill the aggressive brain tumor glioblastoma. By blocking certain functions in the cell with a docked molecule, the researchers cause the cancer to die of stress.Cancer cells, especially those that form…
A pilot investigation of low-pass genome sequencing identifying site-specific variation in chromosomal mosaicisms by a multiple site sampling approach in first-trimester miscarriages
Study question: Can multiple-site low-pass genome sequencing (GS) of products of conception (POCs) improve the detection of genetic abnormalities, especially heterogeneously distributed mosaicism and homogeneously distributed mosaicism in first-trimester miscarriage? Summary answer: Multiple-site sampling combined with low-pass GS significantly increased genetic diagnostic yield (77.0%, 127/165) of first-trimester miscarriages, with mosaicisms…
New antidepressants: tackling treatment resistant depression
Depression is thought to affect approximately 5% of adults worldwide. It encompasses several different depressive disorders, including major depressive disorder, seasonal affective disorder, and persistent depressive disorder, all of which can bring enormous difficulty to people’s lives, resulting in symptoms like poor concentration, hopelessness about the future, feeling tired or…
Differentiated Mouse Adipocytes in Primary Culture: A Model of Insulin Resistance
This protocol describes the isolation of mouse preadipocytes from subcutaneous fat, their differentiation into mature adipocytes, and the induction of insulin resistance. Insulin action is evaluated by the phosphorylation/activation of members of the insulin signaling pathway through western blot. This method allows direct determination of insulin resistance/sensitivity in primary adipocytes….
Problem with GPU guppy_basecaller and SLURM
Hello, I am having trouble running the GPU version of guppy on a cluster using SLURM. I have two guppy scripts called guppy_pass1.sh and guppy_pass2.sh. In the pass 1 script I basecall to get look at the ‘raw’ data without additional filtering/trimming. In the pass 2 script I basecall to…
At every stage from farm to table, more microplastics enter your food
A new study has found that, globally, micro- and nanoplastics and plastic additives are widespread across our food supply. While we have an understanding of how they get there, we don’t know a lot about their effects on human health, food safety and security. The average person discards about 77…
Siblings with autism share more of dad’s genome, not mom’s
For decades, Cold Spring Harbor Laboratory scientists and collaborators have invested millions of dollars into deciphering the genetic causes of autism spectrum disorder (ASD). Their efforts have produced useful insights for diagnosticians, therapists, and educators, helping to change the way people think about this common neurodevelopmental disorder. Now, they’ve taken…
python – PyTorch OOM error while half the GPU memory is free
I am training an object detection network using the detecto library.The dataset consists of RGB images of 50*50 pixels. The batch size is 2. When I run the code (using NeoVim as my IDE), I get this before the end of the first epoch: Variable._execution_engine.run_backward( # Calls into the C++…
Puppeteer Fungus Creates ‘Zombie Flies’ Boosting Its Locomotor Activity Before Dying
The molecular and cellular basis for the parasitic fungus Entomophthora muscae’s (E. muscae) capacity to control the behavior of fruit flies is revealed in a new study by lead author Carolyn Elya, a postdoctoral researcher in the Department of Organismic and Evolutionary Biology at Harvard. Parasitic fungus creates Zombie flies (Photo…
deep learning – How to create a callback in PyTorch Lightning to log activations of each layer in Faster R-CNN with ResNet50-FPN-v2?
I’m currently working on an object detection project using the Faster R-CNN model with the ResNet50-FPN-v2 backbone in PyTorch Lightning. I would like to monitor and log the activations of each layer in the model during training for further analysis. I’ve been searching for a solution or example specifically tailored…
Develop a Python application to notify you about approaching earthbound asteroids
I woke up this morning thinking about Armageddon and how fragile we are as a planet if an asteroid comes our way. I am also intrigued by exploring space and the technologies available from my desk. I will show you how to combine two APIs to be alerted via SMS…
Reducing the size of raw sequencing data in fastq format by using a simplified quality score
Reducing the size of raw sequencing data in fastq format by using a simplified quality score 0 I am looking for suggestions for a tool that will change the quality score of a fastq file into a binary pass/fail score, similar to what SRA-lite is doing. I deally I want…
San Francisco has appointed the first drag laureate in the US
San Francisco announced yesterday (May 18) it appointed D’Arcy Drollinger as the first-ever drag laureate in the nation. Ana Gasteyer on creativity In her ambassadorial role, Drollinger will be tasked with preserving and celebrating drag culture at a time when drag bans and anti-LGBTQ legislation have been on the rise…
How to pass from DNA to AA fasta
How to pass from DNA to AA fasta 0 Hi, I hope you are well. I am trying to figure out how can I pass a eukaryotic gene that has introns to aa sequence. The only way that I have thought is to transcribe all the gene then translate it…
Export an OpenAPI specification from your FastAPI app
FastAPI is a modern Python web framework for building APIs. FastAPI is a great choice for building simple APIs, and it comes with built-in support for generating OpenAPI documentation. In this post we will look at how to generate and extract the OpenAPI specification from a FastAPI project. A simple…
I took full sequence mtDNA test, and results say I belong to H4a1a1a group. What does this mean?
Hi Jerri! What this means is that a long time ago, a few thousand years ago, perhaps somewhere in what is now southern Iberia, a baby girl was born. We don’t know her name. We do know that she had some mutations in her mtDNA that we now classify as…
Significance of “orientation” flag in FilterMutectCalls output
Significance of “orientation” flag in FilterMutectCalls output 0 Hi! I have an annotated vcf file generated by mutect2 and flagged by FliterMutectCalls. Thing is, I have found my variant of interest but it is not flagged as PASS but as “orientation”. I want to know if the read orientation bias…
error while running job in michigan imputation server
Calculating QC Statistics Statistics: Alternative allele frequency > 0.5 sites: 337,476 Reference Overlap: 38.98 % Match: 5,762,722 Allele switch: 0 Strand flip: 0 Strand flip and allele switch: 0 A/T, C/G genotypes: 0 Filtered sites: Filter flag set: 0 Invalid alleles: 0 Multiallelic sites: 63,834 Duplicated sites: 21 NonSNP sites:…
Cutting- Edge Genetic Technology Shaping The Landscape For Animal Genetics Market In U.S.
PRESS RELEASE Published May 18, 2023 Cutting-edge genetic technology has been significantly shaping the landscape for animal genetics market in the U.S. in recent years. These advancements have revolutionized various aspects of animal genetics research, breeding, and production. Here are a few key areas where genetic technology has made a…
Babraham Bioinformatics – FastQC A Quality Control tool for High Throughput Sequence Data
FastQC Function AMPERE quality control tool for elevated throughput sequence data. Your Java What A match Java Runtime Ecology This Picard BAM/SAM Libraries (included in download) Code Maturation Robust. Mature code, but feedback exists comprehended. Code Released No, under GPL v3 or later. Initial Contact Simon Andrews Download Now Views…
Bartholin’s gland cyst caused by Sneathia amnii: a case report | BMC Infectious Diseases
S amnii is an important but underappreciated pathogen affecting women’s health because of its complex nutritional requirements, slow growth patterns, and requirement of anaerobic conditions. S amnii causes bacterial vaginosis and poor reproductive and perinatal outcomes. Sneathia species (spp.) have been identified as members of Community State Type IV (CST-IV)…
Padding Mask Pytorch at Gerald Callahan blog
Padding Mask Pytorch. Web this is not an issue related to nn.transformer or nn.multiheadattention. Web about press copyright contact us creators advertise developers terms privacy policy & safety how youtube works test new features press copyright contact us creators. Tutorial penggunaan PreTrained Model untuk NLP dengan menggunakan…
The Glue of Genomics: Will Science’s Unsung Data Heroes Abandon Academia?
Advances in the last twenty years of genomics have turbocharged our ability to decode DNA and other nucleic acids. At the turn of the century, the Human Genome Project completed a 13-year journey to produce the first complete human genome at a great financial cost. In 2023, genome sequencing is a routine…
2 Stocks You’ll Be Glad You Bought at These Prices
Last year, the stock market went into a downward spiral, and growth stocks as a group were dragged down more than most. However, savvy investors understand that market headwinds sometimes affect the shares of these types of companies through no fault of their own. And businesses with strong fundamentals can…
How Greyhound Racing Drove the Evolution of a Superparasite
In 2017 Ray Kaplan, a parasitologist and veterinarian then at the University of Georgia, started receiving e-mails from colleagues around the U.S. asking for help with resistant parasitic infections in dogs. The parasites were hookworms, a group of roundworm species that target animals and humans. Kaplan specializes in livestock animals,…
expected scalar type half but found float [SOLVED]
The runtimeerror: expected scalar type half but found float error typically occurs when there is a mismatch between the data type expected by a PyTorch function and the actual data type of the tensor being passed as an argument. In this article, we will discuss the causes and provide some…
Which DNA Analysis Tool Wins?
Understanding DNA Analysis Deep Dive into Xcode Life Deep Dive into Promethease Direct Comparison: Xcode Life vs. Promethease User Considerations When Choosing a DNA Analysis Tool The Verdict Important disclosure: we’re proud affiliates of some tools mentioned in this guide. If you click an affiliate link and subsequently make a…
USC Researchers Zoom Into the Human Genome With Unprecedented Resolution
An international research team has identified key base pairs in the human genome that remained consistent over millions of years of mammalian evolution, which play a significant role in human disease, highlighting genetic regions where mutations are not tolerated in evolution, a breakthrough that could improve our understanding of disease…
Circular mitochondrial-encoded mRNAs are a distinct subpopulation of mitochondrial mRNA in Trypanosoma brucei
Some mitochondrial mRNA are circularized CircTAIL-seq is a technique used to Illumina sequence individual transcript PCR libraries of mitochondrial mRNA tails. The approach captures enough of each molecule’s 5′ and 3′ termini that the presence of editing can be confirmed if necessary17. Library preparation first requires circularizing total RNA with…
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Exploring using YOLOv8n with PyTorch Mobile (Android) | by Stephen Cow Chau | May, 2023
Given the previous experience on using YOLOv8 on Android through converting it from ONNX exported => Tensroflow => Tensorflow Lite (plus the realization on ditching tflite support object detection API and use plaint interpretor), there are following items that I am wondering if directly using PyTorch mobile would be a…
PhD in Bioinformatics Course Details, Fees, Admission, Eligibility, Syllabus 2023-24, Career
Bioinformatics is a rapidly growing interdisciplinary field that combines biology, computer science, and statistical analysis to generate meaningful insights from biological data. As the life sciences field continues to generate large amounts of data, there is a growing need for qualified bioinformatics professionals, especially those with PhDs. degree increased significantly….
swagger – If then block from json schema to openapi yaml format
I have the following json schema (which basically generated from a openapi.yaml file), I modified the json schema for some needs but I don’t found the correct syntax for express the ‘IF’ block which allow to required ‘Uuid’ mandatory if is an ‘action’ of ‘remove’ type. Anyone can help me…
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Bioinformatics is a rapidly growing interdisciplinary field that combines biology, computer science, and statistical analysis to generate meaningful insights from biological data. As the life sciences field continues to generate large amounts of data, there is a growing need for qualified bioinformatics professionals, especially those with PhDs. degree increased significantly….