Tag: pData

microarray analysis – gene upregulation/downregulation 0 Hi guys, I have performed microarray differential expression analysis using the following R commands/script: library(“arrayQualityMetrics”) > library(GEOquery) > library(oligo) > library(Biobase) > library(affy) > library(“splitstackshape”) > library(“tidyr”) > library(dplyr) > celFiles <- list.celfiles() > affyRaw <- read.celfiles(celFiles) Platform design info loaded. Reading in :…

Re: [PATCH 2/3] hwmon (coretemp): Add support for dynamic tjmax – Guenter Roeck From: Guenter Roeck <linux@roeck-us.net> To: Zhang Rui <rui.zhang@intel.com> Cc: jdelvare@suse.com, fenghua.yu@intel.com, linux-hwmon@vger.kernel.org, srinivas.pandruvada@linux.intel.com Subject: Re: [PATCH 2/3] hwmon (coretemp): Add support for dynamic tjmax Date: Fri, 11 Nov 2022 13:26:45 -0800 [thread overview] Message-ID: <20221111212645.GA1059539@roeck-us.net> (raw) In-Reply-To:…

[PATCH] mailbox: mtk-cmdq-mailbox: Use platform data directly instead of copying * [PATCH] mailbox: mtk-cmdq-mailbox: Use platform data directly instead of copying @ 2022-11-02 10:07 AngeloGioacchino Del Regno 0 siblings, 0 replies; only message in thread From: AngeloGioacchino Del Regno @ 2022-11-02 10:07 UTC (permalink / raw) To: jassisinghbrar Cc: matthias.bgg,…

[PATCH 07/14] iio: st_sensors: core and lsm9ds0 switch to devm_regulator_bulk_get_enable() – Jonathan Cameron From: Jonathan Cameron <jic23@kernel.org> To: linux-iio@vger.kernel.org Cc: Matti Vaittinen <mazziesaccount@gmail.com>, Matti Vaittinen <matti.vaittinen@fi.rohmeurope.com>, Cosmin Tanislav <cosmin.tanislav@analog.com>, Jagath Jog J <jagathjog1996@gmail.com>, Sean Nyekjaer <sean@geanix.com>, Dmitry Rokosov <DDRokosov@sberdevices.ru>, Linus Walleij <linus.walleij@linaro.org>, Andy Shevchenko <andriy.shevchenko@linux.intel.com>, Michael Hennerich <michael.hennerich@analog.com>, Lorenzo Bianconi…

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Hi, I have found that my selected gene, probe I.D 201667_at is differentially expressed between WDLPS and DDLPS tumour tissue samples after performing microarray DEG analysis. Instead of just a p value in a table format: Probe I.D “201667_at” logFC 10.8205874181535 AveExpr 10.6925705768407 t 82.8808890739766 P.Value 3.10189446528995e-88 adj.P Val 3.10189446528995e-88…

I am a student and struggling with a specific problem regarding the pgmm() function of the plm package in R. I have a pdata.frame for which I want to use the pgmm function for a dynamic panel model. However, the following error occurs: Error in pdata.frame(data, index): variable NA does…

[PATCH] leds: max8997: Don’t error if there is no pdata * [PATCH] leds: max8997: Don’t error if there is no pdata @ 2022-08-07 10:40 Paul Cercueil 2022-08-08 13:16 ` Andy Shevchenko 0 siblings, 1 reply; 2+ messages in thread From: Paul Cercueil @ 2022-08-07 10:40 UTC (permalink / raw) To:…

[PATCH 2/2] iio: st_sensors: Fix null pointer on defer_probe error – Matti Lehtimäki From: “Matti Lehtimäki” <matti.lehtimaki@gmail.com> To: linux-iio@vger.kernel.org Cc: ~postmarketos/upstreaming@lists.sr.ht, “Matti Lehtimäki” <matti.lehtimaki@gmail.com>, “Jonathan Cameron” <jic23@kernel.org>, “Lars-Peter Clausen” <lars@metafoo.de>, “Miquel Raynal” <miquel.raynal@bootlin.com>, “Linus Walleij” <linus.walleij@linaro.org>, “Cai Huoqing” <cai.huoqing@linux.dev>, “Alexandru Ardelean” <aardelean@deviqon.com>, linux-kernel@vger.kernel.org Subject: [PATCH 2/2] iio: st_sensors: Fix null…

Re: [net-next: PATCH 11/12] net: dsa: mv88e6xxx: switch to device_/fwnode_ APIs – Marcin Wojtas From: Marcin Wojtas <mw@semihalf.com> To: Andy Shevchenko <andriy.shevchenko@linux.intel.com> Cc: Linux Kernel Mailing List <linux-kernel@vger.kernel.org>, ACPI Devel Maling List <linux-acpi@vger.kernel.org>, netdev <netdev@vger.kernel.org>, “Rafael J. Wysocki” <rafael@kernel.org>, Len Brown <lenb@kernel.org>, Andrew Lunn <andrew@lunn.ch>, vivien.didelot@gmail.com, Florian Fainelli <f.fainelli@gmail.com>, Vladimir…

Question: Microsoft extensions to C and C++: To perform the same cast and also maintain ANSI compatibility, you can cast the function pointer to a uintptr_t before you cast it to a data pointer: int ( * pfunc ) (); int *pdata; pdata = ( int * ) (uintptr_t) pfunc;…

You are overwriting the same file everytime in your loop. You need to change the file-name as well: pFile = ‘test.csv’ oFile = ‘test’ #add xml later if os.path.isfile(pFile) and pFile.endswith(ext): with open(pFile, ‘r’) as pData: reader = csv.reader(pData) pData = {} for i, row in enumerate(reader, 1): #count each…

Hi Uri, Thank you for the patch! Yet something to improve: [auto build test ERROR on staging/staging-testing] url: github.com/intel-lab-lkp/linux/commits/Uri-Arev/staging-fbtft-fix-checkpatch-pl-struct-should-normally-be-const/20220520-012948 base: git.kernel.org/pub/scm/linux/kernel/git/gregkh/staging.git 4d0cc9e0e53e9946d7b8dc58279c62dfa7a2191b config: arm64-randconfig-r011-20220519 (download.01.org/0day-ci/archive/20220520/202205200821.nJQ0IfFt-lkp@xxxxxxxxx/config) compiler: clang version 15.0.0 (github.com/llvm/llvm-project e00cbbec06c08dc616a0d52a20f678b8fbd4e304) reproduce (this is a W=1 build): wget raw.githubusercontent.com/intel/lkp-tests/master/sbin/make.cross -O ~/bin/make.cross chmod +x ~/bin/make.cross # install arm64 cross compiling tool…

[PATCH] ASoC: fsl: Fix error handling in pcm030_fabric_probe * [PATCH] ASoC: fsl: Fix error handling in pcm030_fabric_probe @ 2022-03-01 7:53 Miaoqian Lin 2022-03-02 13:44 ` Mark Brown 0 siblings, 1 reply; 7+ messages in thread From: Miaoqian Lin @ 2022-03-01 7:53 UTC (permalink / raw) To: Liam Girdwood, Mark Brown,…

Re: [PATCH] staging: rtl8712: fix uninit-value “data” and “mac” – Dan Carpenter From: Dan Carpenter <dan.carpenter@oracle.com> To: Wang Cheng <wanngchenng@gmail.com> Cc: Larry.Finger@lwfinger.net, florian.c.schilhabel@googlemail.com, gregkh@linuxfoundation.org, linux-staging@lists.linux.dev, linux-kernel@vger.kernel.org Subject: Re: [PATCH] staging: rtl8712: fix uninit-value “data” and “mac” Date: Fri, 15 Apr 2022 13:02:23 +0300 [thread overview] Message-ID: <20220415100223.GS3293@kadam> (raw) In-Reply-To: <20220415094705.aibh3jr4wzhddmud@ppc.localdomain>…

else if (verInfo.dwBuildNumber == 19041) { pData->ver = WINVER_10_20H1; // KP pData->KExecOpt = 0x283; // EP pData->Protection = 0x87A; pData->EProcessFlags2 = 0x9D4; // MitigationFlags offset pData->ObjTable = 0x570; pData->VadRoot = 0x7D8; // KT pData->PrevMode = 0x232; // ET pData->ExitStatus = 0x548; // SSDT pData->NtCreateThdExIndex = 0xC1; pData->NtTermThdIndex = 0x53; pData->MiAllocPage…

HI So, I want to try the compute shader to calculate transfer functions on my 3D texture, and output a new 3D texture, but I cant get it to work at all… Nothing happens. Right now I am just trying to fill the whole new 3D texture (outVolumeTexture) with values…

Messages in this thread Subject Re: [PATCH v4 3/3] drm/bridge: ti-sn65dsi86: Support hotplug detection From Kieran Bingham <> Date Wed, 23 Mar 2022 22:11:25 +0000 Quoting Doug Anderson (2022-03-23 21:47:17)> Hi,> > On Thu, Mar 17, 2022 at 6:13 AM Kieran Bingham> <kieran.bingham+renesas@ideasonboard.com> wrote:> >> > @@ -1241,9 +1350,32 @@…

Quoting Kieran Bingham (2022-03-07 17:59:54) > From: Laurent Pinchart <laurent.pinchart+renesas@xxxxxxxxxxxxxxxx> > > Despite the SN65DSI86 being an eDP bridge, on some systems its output is > routed to a DisplayPort connector. Enable DisplayPort mode when the next > component in the display pipeline is detected as a DisplayPort > connector,…

RE: [PATCH] input: keyboard: snvs_pwrkey: Add key-release-only – Jacky Bai From: Jacky Bai <ping.bai@nxp.com> To: Alifer Moraes <alifer.m@variscite.com>, “linux-kernel@vger.kernel.org” <linux-kernel@vger.kernel.org> Cc: “devicetree@vger.kernel.org” <devicetree@vger.kernel.org>, “dmitry.torokhov@gmail.com” <dmitry.torokhov@gmail.com>, “eran.m@variscite.com” <eran.m@variscite.com>, “festevam@gmail.com” <festevam@gmail.com>, “kernel@pengutronix.de” <kernel@pengutronix.de>, “linux-arm-kernel@lists.infradead.org” <linux-arm-kernel@lists.infradead.org>, dl-linux-imx <linux-imx@nxp.com>, “linux-input@vger.kernel.org” <linux-input@vger.kernel.org>, Pierluigi Passaro <pierluigi.p@variscite.com>, “robh+dt@kernel.org” <robh+dt@kernel.org>, “s.hauer@pengutronix.de” <s.hauer@pengutronix.de>, “shawnguo@kernel.org” <shawnguo@kernel.org>, “u.kleine-koenig@pengutronix.de” <u.kleine-koenig@pengutronix.de>, mcontenti <marco.c@variscite.com>…

Hello,I’m using a Sparkfun ESP32 Thing with the Arduino framework, trying to connect to and read from services on some W4 beacons – www.mokosmart.com/positioning-beacon-w3-w4/ I can successfully scan for the beacons, get the address, local name etc. however, actually connecting never succeeds – the call to client->connect() never returns. My…

[PATCH V2 1/2] net: ravb: Add tx/rx delay flag checks and support for rgmii-rxid * [PATCH V2 1/2] net: ravb: Add tx/rx delay flag checks and support for rgmii-rxid @ 2022-02-25 18:29 Adam Ford 2022-02-25 18:29 ` [PATCH V2 2/2] arm: rmobile: rzg2_beacon: Enable proper Ethernet PHY Adam Ford 2022-02-25…

[PATCH v2] media: m5mols: Convert to use GPIO descriptors * [PATCH v2] media: m5mols: Convert to use GPIO descriptors @ 2022-02-24 0:13 Linus Walleij 0 siblings, 0 replies; only message in thread From: Linus Walleij @ 2022-02-24 0:13 UTC (permalink / raw) To: Mauro Carvalho Chehab, linux-media Cc: Linus Walleij,…

The function “drm_of_find_panel_or_bridge” has been deprecated in favor of “devm_drm_of_get_bridge”. Switch to the new function and reduce boilerplate. Signed-off-by: José Expósito <jose.exposito89@xxxxxxxxx> — drivers/gpu/drm/bridge/analogix/anx7625.c | 16 +++++———– 1 file changed, 5 insertions(+), 11 deletions(-) diff –git a/drivers/gpu/drm/bridge/analogix/anx7625.c b/drivers/gpu/drm/bridge/analogix/anx7625.c index 2346dbcc505f..dfeb800751d5 100644 — a/drivers/gpu/drm/bridge/analogix/anx7625.c +++ b/drivers/gpu/drm/bridge/analogix/anx7625.c @@ -1333,8 +1333,6 @@ static…

[PATCH 3/3] leds: regulator: Make probeable from device tree – Linus Walleij From: Linus Walleij <linus.walleij@linaro.org> To: Pavel Machek <pavel@ucw.cz> Cc: linux-leds@vger.kernel.org, Linus Walleij <linus.walleij@linaro.org>, Antonio Ospite <ao2@ao2.it> Subject: [PATCH 3/3] leds: regulator: Make probeable from device tree Date: Sun, 20 Feb 2022 00:56:07 +0100 [thread overview] Message-ID: <20220219235607.1613686-3-linus.walleij@linaro.org> (raw)…

[PATCH] staging: wfx: fix the error handling in wfx_init_common() * [PATCH] staging: wfx: fix the error handling in wfx_init_common() @ 2022-02-17 15:29 xkernel.wang 2022-02-17 15:36 ` Greg KH 0 siblings, 1 reply; 2+ messages in thread From: xkernel.wang @ 2022-02-17 15:29 UTC (permalink / raw) To: jerome.pouiller, gregkh; +Cc: linux-staging,…

MetricValueType type sounds confusing. It’s not a type of any metric value, it’s applicable to numeric values only. Originally raised by @bogdandrutu github.com/open-telemetry/opentelemetry-collector/pull/4811#discussion_r801186353: On the list of “may fix”: MetricValueType does not sound as the best name for the enum. Maybe NumberValueType? PointValueType? Not sure, just open an issue, this…

Public Member Functions virtual void  initOptions (IOptionsContainer *options, TrajectoryAnalysisSettings *settings)   Initializes options understood by the module. More…   virtual void  optionsFinished (TrajectoryAnalysisSettings *settings)   Called after all option values have been set. More…   virtual void  initAnalysis (const TrajectoryAnalysisSettings &settings, const TopologyInformation &top)   Initializes the analysis. More…  …

[PATCH v1 5/9] drm/bridge: ti-sn65dsi86: Fetch bpc via drm_bridge_state – Sam Ravnborg From: Sam Ravnborg <sam@ravnborg.org> To: dri-devel@lists.freedesktop.org, Douglas Anderson <dianders@chromium.org> Cc: Rob Clark <robdclark@chromium.org>, Philip Chen <philipchen@chromium.org>, Jitao Shi <jitao.shi@mediatek.com>, Thomas Zimmermann <tzimmermann@suse.de>, Jonas Karlman <jonas@kwiboo.se>, Robert Foss <robert.foss@linaro.org>, Neil Armstrong <narmstrong@baylibre.com>, Jernej Skrabec <jernej.skrabec@gmail.com>, Andrzej Hajda <a.hajda@samsung.com>, Laurent…

From Andy Shevchenko <> Subject [PATCH v1 1/1] iio: frequency: adf4350: Make use of device properties Date Wed, 2 Feb 2022 22:29:36 +0200 Convert the module to be property provider agnostic and allowit to be used on non-OF platforms.Signed-off-by: Andy Shevchenko <andriy.shevchenko@linux.intel.com>—drivers/iio/frequency/adf4350.c | 103 +++++++++++++——————-1 file changed, 42 insertions(+), 61…

Hi All, In my analysis, I want to find the different expression genes betweendissese A and B. There are two type of batch effect in my analysis. Iwant to use limma to remove two type of batch effect, one is gender,another is tissue type. I do as fellow. But I…

From Yong Wu <> Subject [PATCH v4 16/35] iommu/mediatek: Add IOMMU_TYPE flag Date Tue, 25 Jan 2022 16:56:15 +0800 Add IOMMU_TYPE definition. In the mt8195, we have another IOMMU_TYPE:infra iommu, also there will be another APU_IOMMU, thus, use 2bits for theIOMMU_TYPE.Signed-off-by: Yong Wu <yong.wu@mediatek.com>Reviewed-by: AngeloGioacchino Del Regno <angelogioacchino.delregno@collabora.com>—drivers/iommu/mtk_iommu.c | 12…

Hi from krita import * def selectRGB(node, red, green, blue, selectionLevel=255): # get pixels data from node projection # for RGBA/8bit, pixel data format: Blue, Green, Red, Alpha pdata=node.projectionPixelData(node.bounds().left(), node.bounds().top(), node.bounds().width(), node.bounds().height()) bred=red.to_bytes(1, ‘big’) bgreen=green.to_bytes(1, ‘big’) bblue=blue.to_bytes(1, ‘big’) # prepare selection (0=no selection, 255=full selection) selectionPixels=[0]*(node.bounds().width()*node.bounds().height()) offset=0 for index in…

So I’ve been trying to create a custom system (kinda lika a garage system, but different) for my server.As I got to the part where I display the player all vehicles he ownes I need to create a server callback where the script gets all vehicles from the database using…

I make an editor for own game engine and I used for 2d rendering Direct2D but I wanted to render a directx texture on window in editor, I didn’t find convenient way to convert directx texture to direct2d bitmap. I decided to make own 2d render on directx 11 and…

Problem : ( Scroll to solution ) How would I get a range of items from my xmllist similar to the slice method for an array? slice(startIndex,endIndex); I am trying something like this: var tempXMLList:XMLList = new XMLList(); for( var i:int = startIndex; i <= endIndex; i++){ tempXMLList += originalList[i];…

[PATCH] pwm: pwm-mtk-disp: Switch to regmap for mmio access * [PATCH] pwm: pwm-mtk-disp: Switch to regmap for mmio access @ 2022-01-03 15:35 AngeloGioacchino Del Regno 0 siblings, 0 replies; only message in thread From: AngeloGioacchino Del Regno @ 2022-01-03 15:35 UTC (permalink / raw) To: thierry.reding Cc: u.kleine-koenig, lee.jones, matthias.bgg,…

boost/type_traits/integral_constant.hpp // (C) Copyright John Maddock 2015. // Use, modification and distribution are subject to the // Boost Software License, Version 1.0. (See accompanying file // LICENSE_1_0.txt or copy at www.boost.org/LICENSE_1_0.txt) #ifndef BOOST_TYPE_TRAITS_INTEGRAL_CONSTANT_HPP #define BOOST_TYPE_TRAITS_INTEGRAL_CONSTANT_HPP #include <boost/config.hpp> #include <boost/detail/workaround.hpp> #if (BOOST_WORKAROUND(BOOST_MSVC, BOOST_TESTED_AT(1400)) || BOOST_WORKAROUND(BOOST_BORLANDC, BOOST_TESTED_AT(0x610)) || BOOST_WORKAROUND(__DMC__, BOOST_TESTED_AT(0x840)) || BOOST_WORKAROUND(__MWERKS__,…

The correct place for this question is on the Bioconductor support site. It’s better to provide a reproducible example that captures the essence of the problem; creating the reproducible example often helps to identify the reason for the problem. library(Biobase) exprs <- matrix(0, nrow=5, ncol=3, dimnames=list(letters[1:5], LETTERS[1:3])) pData <- data.frame(id=c(“foo”,…

[PATCH net-next v2 3/3] net: amd-xgbe: Disable the CDR workaround path for Yellow Carp Devices – Raju Rangoju From: Raju Rangoju <rrangoju@amd.com> To: <thomas.lendacky@amd.com>, <davem@davemloft.net>, <kuba@kernel.org> Cc: <netdev@vger.kernel.org>, <Shyam-sundar.S-k@amd.com>, <Sudheesh.Mavila@amd.com>, <Raju.Rangoju@amd.com> Subject: [PATCH net-next v2 3/3] net: amd-xgbe: Disable the CDR workaround path for Yellow Carp Devices Date: Mon, 20…

Re: [PATCH net-next 1/3] net: amd-xgbe: Add Support for Yellow Carp Ethernet device – Tom Lendacky From: Tom Lendacky <thomas.lendacky@amd.com> To: Raju Rangoju <rrangoju@amd.com>, davem@davemloft.net, kuba@kernel.org Cc: netdev@vger.kernel.org, Shyam-sundar.S-k@amd.com, Sudheesh.Mavila@amd.com, Raju.Rangoju@amd.com Subject: Re: [PATCH net-next 1/3] net: amd-xgbe: Add Support for Yellow Carp Ethernet device Date: Fri, 17 Dec 2021…

[PATCH V1 1/1] serial: 8250_fintek: Fix garbled text for console * [PATCH V1 1/1] serial: 8250_fintek: Fix garbled text for console @ 2021-12-15 7:58 Ji-Ze Hong (Peter Hong) 0 siblings, 0 replies; only message in thread From: Ji-Ze Hong (Peter Hong) @ 2021-12-15 7:58 UTC (permalink / raw) To: gregkh,…

I’m currently messing around with two ESP32 and trying to connect them via BLE. So far i can send a notification from the server to the client and do a write from the client that the server can see. I’m trying to get a response on a nofity, and my…

WARNING: This is an attempt to clarify if there is any safe way to use dynamic arrays on Arduino Platform ! The recommended way is to avoid dynamic memory allocation due to the missing memory manager who would clean up SRAM after the memory space is freed again. If you…

Commit: bb407d1b8f326a408932aff5a0f636268ac93787 Author: Hans Goudey Date: Fri Dec 10 13:37:47 2021 -0600 Branches: temp-vert-normals-cleanup developer.blender.org/rBbb407d1b8f326a408932aff5a0f636268ac93787 Fix assert failure from bad threading in ensure functions =================================================================== M source/blender/blenkernel/intern/mesh_normals.cc =================================================================== diff –git a/source/blender/blenkernel/intern/mesh_normals.cc b/source/blender/blenkernel/intern/mesh_normals.cc index b4686d17a59..e0fc3d4f407 100644 — a/source/blender/blenkernel/intern/mesh_normals.cc +++ b/source/blender/blenkernel/intern/mesh_normals.cc @@ -269,28 +269,33 @@ const float (*BKE_mesh_ensure_vertex_normals(const Mesh *mesh))[3] BLI_mutex_lock(normals_mutex); if…

A result set from a PDO query is as follows… Array ( [0] => Array ( [activity_link_type] => Category [data_id] => 1 ) [1] => Array ( [activity_link_type] => Category [data_id] => 38 ) [2] => Array ( [activity_link_type] => PData [data_id] => 108 ) [3] => Array ( [activity_link_type]…

From: Rob Clark <robdclark@xxxxxxxxxxxx> Otherwise we don’t get another shot at it if the bridge probes before the dsi host is registered. It seems like this is what *most* (but not all) of the other bridges do. It looks like this was missed in the conversion to attach dsi host…

Where is genotype calls in this dataset? 0 Hello, I have a dataset from GEO, with ID = GSE20206. I have already checked the dataset using the below code in R: geo.sample <- getGEO(“GSE20206”, GSEMatrix = TRUE) data1 <- geo.sample[[1]] data2 <- geo.sample[[2]] data3 <- geo.sample[[3]] sample_info <- pData(data1) snp_info…

Extract batch variable from GEO dataset 0 I want to perform gene expression analysis of the microarray dataset GSE66099. One of the steps required to move forward with the analysis is a batch correction. I want to consider measurement year as the batch variable. However, I am not sure how…