Tag: platypus

Accent Group Selects Amperity to Accelerate Its First-Party Customer Data Strategy

Amperity, the leading AI-powered enterprise customer data platform (CDP) for consumer brands, today announced Accent Group, the leading omnichannel retailer in the Apparel and Footwear performance and lifestyle market in Australia and New Zealand, selected Amperity to be the foundation of its first-party customer data strategy to deliver highly personalised…

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Biology 1040 Chapter 15 – Be able to correctly label in-groups and branch-points.(s17, s19)

– Be able to correctly label in-groups and branch-points.(s17, s19) outgroup: frog because all examples have 4 limbs Ingroup: iguana, duck-billed platypus, kangaroo, and beaver Branch point: green; derived character: gestation – Define, describe, and evaluate how mtDNA and rRNA are used to infer relatedness. Know-apply when to use each…

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KEGG T01045: 100076899

Entry 100076934         CDS       T01045                                  Name (RefSeq) cytosolic non-specific dipeptidase   KO K08660   cytosolic nonspecific dipeptidase [EC:3.4.13.18] Organism oaa  Ornithorhynchus anatinus (platypus) Pathway oaa00330   Arginine and proline metabolism oaa00340   Histidine metabolism oaa00410   beta-Alanine metabolism oaa01100   Metabolic pathways Brite KEGG Orthology (KO) [BR:oaa00001] 09100 Metabolism  09105 Amino acid metabolism   00330 Arginine and proline metabolism    100076934   00340 Histidine metabolism    100076934  09106 Metabolism of other…

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more cancer and risk of extinction

24 An international research team has shown that bladder cancer with cells lacking the Y chromosome is more aggressive and deadly. The loss of the Y chromosome, linked to the male sex, often occurs naturally in cells during old age, but in our species it is also “losing pieces” for…

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Transposons contribute to the acquisition of cell type-specific cis-elements in the brain

De novo motifs with high variability in chromatin accessibility across cells are similar to known binding motifs of neural differentiation-related transcription factors To discover accessible DNA motifs that are important for cell-type specificity in the mouse adult prefrontal cortex (P56), we first investigated whether cell types are characterized by k-mer…

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UCSC Genome Browser | Encyclopedia MDPI

1. History Initially built and still managed by Jim Kent, then a graduate student, and David Haussler, professor of Computer Science (now Biomolecular Engineering) at the University of California, Santa Cruz in 2000, the UCSC Genome Browser began as a resource for the distribution of the initial fruits of the…

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Genetic and chemotherapeutic influences on germline hypermutation

DNM filtering in 100,000 Genomes Project We analysed DNMs called in 13,949 parent–offspring trios from 12,609 families from the rare disease programme of the 100,000 Genomes Project. The rare disease cohort includes individuals with a wide array of diseases, including neurodevelopmental disorders, cardiovascular disorders, renal and urinary tract disorders, ophthalmological…

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Pangenome-based genome inference allows efficient and accurate genotyping across a wide spectrum of variant classes

Sequencing data We used publicly available sequencing data from the GIAB consortium45, 1000 Genomes Project high-coverage data46 and Human Genome Structural Variation Consortium (HGSVC)4. All datasets include only samples consented for public dissemination of the full genomes. Statistics and reproducibility For generating the assemblies, we used all 14 samples for…

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A mammalian methylation array for profiling methylation levels at conserved sequences

Designing the mammalian methylation array The CMAPS algorithm is designed to select a set of Illumina Infinium array probes such that for a target set of species many probes are expected to work in each species (see “Methods” section). Array probes are sequences of length 50 bp flanking a target CpG…

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Beagle 5.2 Imputation Issue, understanding output

Hey everyone, I’m having some trouble with the imputation step in my GBS pipeline. I’m following the FastGBS pipeline basically as written up until this point. Before running Beagle, i’ve performed a filtering step using vcftools (though I get the same error whether or not I do this; I just…

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Sequenced quoll genome a new tool for conservation

European colonists mistakenly labelled quolls as “native cats” when in fact they are among Australia’s last living carnivorous marsupials. Often overshadowed by their better-known cousins the Tasmanian Devils and the extinct Tasmanian Tiger (thylacine), quolls have a 15 million year history in Australia, successfully balancing shifting ecosystems by suppressing prey…

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Platypus

Platypus 0 Hi, I’m super new to WGS and bioinformatics, but I’m a classic software data scientist, so I know enough to be annoying. I’m using Platypus too call variants on 100X WGS via Nebula Genomics. I found an odd series of calls and am not sure if this is…

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