Tag: PopGenome
there are extra regions when calculating Tajima’s D per gene
Hello all, I am new to PopGenome and would like to ask one question that greatly confused me. I was trying to calculate Tajima’s D by gene for my whole genome data. I imported the gff files and subsited the data by “gene”. See my codes below. However, when I…
The meaning of wild: Genetic and adaptive consequences from large-scale releases of domestic mallards
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Pangenomics of the death cap mushroom Amanita phalloides, and of Agaricales, reveals dynamic evolution of toxin genes in an invasive range
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Whole genome sequencing revealed genetic diversity, population structure, and selective signature of Panou Tibetan sheep | BMC Genomics
Zhao E, Yu Q, Zhang N, Kong D, Zhao Y. Mitochondrial DNA diversity and the origin of Chinese indigenous sheep. Trop Anim Health Prod. 2013;45(8):1715-22. Liu J, Ding X, Zeng Y, Yue Y, Guo X, Guo T, et al. Genetic diversity and phylogenetic evolution of Tibetan sheep based on mtDNA D-loop…
Phylogenomics and species delimitation of the economically important Black Basses (Micropterus)
Arlinghaus, R. et al. Governing the recreational dimension of global fisheries. Proc. Nat. Acad. Sci. USA 116, 5209–5213 (2019). CAS PubMed PubMed Central Article Google Scholar Cowx, I. G. & Gerdeaux, D. The effects of fisheries management practises on freshwater ecosystems. Fish. Manag. Ecol. 11, 145–151 (2004). Article Google Scholar …
Answer: PopGenome – VCF, fasta, GTF and codons still missing
Dear Maciek Hopefully you were able to solve these problems already. I cannot comment on the main set of issues you reported. However, I also encountered the error: `Error in START[!REV, 3] : incorrect number of dimensions` following certain instances of `set.synnonsyn` which I also noticed occurred for genes which…
