Tag: psiblast

How to get gene from PSIBLAST resuts 1 Hello, I am currently utilizing the local version of PSIBLAST to search for homologous genes by comparing a protein sequence against a protein database. However, I am interested in obtaining the nucleotide sequence from the PSIBLAST results. Although I have access to…

Can the value in the pssm (pssm_acsii generated with psiblast) matrix can be greater than 10? 0 Can the value in the pssm (pssm_acsii generated with psiblast) matrix can be greater than 10? I am reading a paper, and his source code of reading pssm_acsii.txt use only ones place of…

keep getting error with psiblast 1 hello I am trying to calculate the PSSM but I keep getting error , where is the problem in this code ? import os import re def command_pssm(content, output_file,pssm_file): os.system(‘psiblast -in_msa 1ak4.fasta -db allseq.fasta -num_threads 10 -num_iterations 3 -evalue 0.001 -out output_file -out_ascii_pssm PSSM.txt’…