Tag: Psme1

Gene Set – PPP6C

Symbol Name ACTR3 ARP3 actin-related protein 3 homolog (yeast) ADAR adenosine deaminase, RNA-specific ADNP activity-dependent neuroprotector homeobox ANAPC13 anaphase promoting complex subunit 13 ARF6 ADP-ribosylation factor 6 ATP5C1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 ATP5J2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 ATP5L ATP…

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p-fold plot

p-fold plot 1 I want to construct this plot, and I have already performed the DESeq analysis. This is how the data looks: Gene p_val avg_logFC pct.1 pct.2 p_val_adj HLA-B 1.69E-152 0.719935845 0.993 0.988 2.38E-148 VAMP5 2.73E-97 1.137804386 0.87 0.527 3.85E-93 PSME2 6.25E-88 0.820693535 0.965 0.88 8.80E-84 STAT1 1.03E-83 0.890453249…

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Reactome | GSN(404-782) [cytosol]

 UniProt:P68135 ACTS      0.867 10  UniProt:P07830  4 act9 [extracellular region] (R-DDI-350725-3) act9 [nucleoplasm] (R-DDI-3321990-3) act9 [cytosol] (R-DDI-201861-3) act9 [plasma membrane] (R-DDI-196016-3) 0.683 5  UniProt:P03372 ESR1  8 p-S118-ESR1 [nucleoplasm] (R-HSA-9024210) monoSUMO1-5K-ESR1 [nucleoplasm] (R-HSA-4090302) Me260-PalmS-ESR1 [plasma membrane] (R-HSA-9637788) PalmS-ESR1 [plasma membrane] (R-HSA-9021057) PalmS-ESR1 [cytosol] (R-HSA-9020974) Me260-ESR1 [cytosol] (R-HSA-9632177) ESR1 [nucleoplasm] (R-HSA-446168)…

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Dual roles of mTORC1-dependent activation of the ubiquitin-proteasome system in muscle proteostasis

Sustained skeletal muscle mTORC1 activity upregulates the ubiquitin proteasome system To understand the molecular mechanisms causing atrophy in muscles with high mTORC1 activation, we first analyzed the transcriptome of the fast-type extensor digitorum longus (EDL) muscle in 3-month-old TSCmKO mice6. A short-term (3 day) treatment with rapamycin was used to…

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