Tag: PubMed

Harnessing the Electrochemical Effects of Electroporation-Based Therapies to Enhance Anti-tumor Immune Responses

Aycock, K. N., and R. V. Davalos. Irreversible electroporation: background, theory, and review of recent developments in clinical oncology. bioelectricity. 1:214–234, 2019. Article  PubMed  PubMed Central  Google Scholar  Balogh, J., D. Victor, E. H. Asham, S. G. Burroughs, M. Boktour, A. Saharia, Li, R. M. Ghobrial, and H. P. Monsour….

Continue Reading Harnessing the Electrochemical Effects of Electroporation-Based Therapies to Enhance Anti-tumor Immune Responses

Taxonomic and environmental distribution of bacterial amino acid auxotrophies

Tripp, H. J. et al. SAR11 marine bacteria require exogenous reduced sulphur for growth. Nature 452, 741–744 (2008). Article  ADS  CAS  PubMed  Google Scholar  Yu, X. J., Walker, D. H., Liu, Y. & Zhang, L. Amino acid biosynthesis deficiency in bacteria associated with human and animal hosts. Infect. Genet. Evol….

Continue Reading Taxonomic and environmental distribution of bacterial amino acid auxotrophies

Detection of a novel Babesia sp. in Amblyomma javanense, an ectoparasite of Sunda pangolins | Parasites & Vectors

Yabsley MJ, Shock BC. Natural history of zoonotic Babesia: role of wildlife reservoirs. Int J Parasitol Parasit Wildl. 2013;2:18–31. Article  Google Scholar  Hersh MH, Tibbetts M, Strauss M, Ostfeld RS, Keesing F. Reservoir competence of wildlife host species for Babesia microti. Emerg Infect Dis. 2012;18:1951–7. Article  PubMed  PubMed Central  Google…

Continue Reading Detection of a novel Babesia sp. in Amblyomma javanense, an ectoparasite of Sunda pangolins | Parasites & Vectors

Molecular epidemiology and characteristics of respiratory syncytial virus among hospitalized children in Guangzhou, China | Virology Journal

Falsey AR, Walsh EE. Respiratory syncytial virus infection in adults. Clin Microbiol Rev. 2000;13(3):371–84. Article  CAS  PubMed  PubMed Central  Google Scholar  Walker CLF, Rudan I, Liu L, Nair H, Theodoratou E, Bhutta ZA, O’Brien KL, Campbell H, Black RE. Global burden of childhood pneumonia and diarrhoea. Lancet (London, England). 2013;381(9875):1405–16….

Continue Reading Molecular epidemiology and characteristics of respiratory syncytial virus among hospitalized children in Guangzhou, China | Virology Journal

Improving Species Level-taxonomic Assignment from 16S rRNA Sequencing Technologies

Affiliations Expand Affiliations 1 Oncology Data Analytics Program (ODAP), Catalan Institute of Oncology (ICO), L’Hospitalet del Llobregat, Barcelona, Catalonia, Spain. 2 ONCOBELL Program, Bellvitge Biomedical Research Institute (IDIBELL), L’Hospitalet de Llobregat, Barcelona, Catalonia, Spain. 3 Department of Clinical Sciences, Faculty of Medicine and Health Sciences and Universitat de Barcelona Institute…

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Association between mitochondrial DNA levels and depression: a systematic review and meta-analysis | BMC Psychiatry

Tartt AN, Mariani MB, Hen R, Mann JJ, Boldrini M. Dysregulation of adult hippocampal neuroplasticity in major depression: pathogenesis and therapeutic implications. Mol Psychiatry. 2022;27(6):2689–99. doi.org/10.1038/s41380-022-01520-y Article  CAS  PubMed  PubMed Central  Google Scholar  Friedrich MJ. Depression is the leading cause of disability around the World. JAMA. 2017;317(15):1517. doi.org/10.1001/jama.2017.3826 Article  PubMed …

Continue Reading Association between mitochondrial DNA levels and depression: a systematic review and meta-analysis | BMC Psychiatry

Weaponized genomics: potential threats to international and human security

Lentzos, F. (ed.) Biological threats in the 21st century: The politics, people, science and historical roots (Imperial College Press, 2016). Kania, E. B. Minds at War: China’s pursuit of military dominance through the cognitive sciences and biotechnology. PRISM 8, 82–101 (2019). Google Scholar  Lentzos, F. Personalized war: How the genomics…

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A DNA barcode library for woody plants in tropical and subtropical China

Hebert, P. D. N., Cywinska, A., Ball, S. L. & deWaard, J. R. Biological identifications through DNA barcodes. Proc Biol Sci 270, 313–321 (2003). Article  CAS  PubMed  PubMed Central  Google Scholar  Huang, X., Ci, X., Conran, J. G. & Li, J. Application of DNA barcodes in Asian tropical trees –…

Continue Reading A DNA barcode library for woody plants in tropical and subtropical China

Taxonomic identification and temperature stress tolerance mechanisms of Aequorivita marisscotiae sp. nov

Zain ul Arifeen, M., Ma, Y.-N., Xue, Y.-R. & Liu, C.-H. Deep-sea fungi could be the new arsenal for bioactive molecules. Mar. Drugs 18, 9 (2020). Article  Google Scholar  Martínez-Espinosa, R. M. Microorganisms and their metabolic capabilities in the context of the biogeochemical nitrogen cycle at extreme environments. Int. J….

Continue Reading Taxonomic identification and temperature stress tolerance mechanisms of Aequorivita marisscotiae sp. nov

Unraveling the mitochondrial phylogenetic landscape of Thailand reveals complex admixture and demographic dynamics

Higham, C. Early Mainland Southeast Asia (Antiquity (River Books Press Dist A C, 2014). Google Scholar  O’Connell, J. F. et al. When did homo sapiens first reach Southeast Asia and Sahul?. Proc. Natl. Acad. Sci. U. S. A. 115, 8482–8490 (2018). Article  ADS  PubMed  PubMed Central  Google Scholar  Freidline, S….

Continue Reading Unraveling the mitochondrial phylogenetic landscape of Thailand reveals complex admixture and demographic dynamics

Functional convergence of genomic and transcriptomic architecture underlies schooling behaviour in a live-bearing fish

Krause, J. & Ruxton, G. D. Living in Groups (Oxford Univ. Press, 2002). Réale, D., Reader, S. M., Sol, D., McDougall, P. T. & Dingemanse, N. J. Integrating animal temperament within ecology and evolution. Biol. Rev. 82, 291–318 (2007). Article  PubMed  Google Scholar  Gartland, L. A., Firth, J. A., Laskowski,…

Continue Reading Functional convergence of genomic and transcriptomic architecture underlies schooling behaviour in a live-bearing fish

EMDB < EMD-14025

Field: Choose…EMDB IDTitleAuthorORCIDEM methodCurrent statusDeposition dateRelease dateDeposition siteLast processing siteFitted modelsRaw dataResolutionResolution methodSoftwareLigand nameComplex nameDomain nameDrug nameGO term nameInterPro term nameChEBI term nameExternal reference Publication titlePublication yearJournalPublication author Sample typeSample nameOrganismOrganism (NCBI code)StrainOrganTissueCellOrganelleCellular LocationE.C. numberMolecular Weight methodMolecular Weight (Da)Recombinant ExpressionRecombinant organismRecombinant organism (NCBI code)Recombinant strainRecombinant expression cellRecombinant expression plasmidDNA/RNA classificationDNA/RNA…

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CircRNA in ocular neovascular diseases: Fundamental mechanism and clinical potential

Review doi: 10.1016/j.phrs.2023.106946. Epub 2023 Oct 4. Affiliations Expand Affiliations 1 Department of Ophthalmology, 2nd Hospital of Jilin University, Changchun 130041, Jilin, China. 2 Department of Ophthalmology, 2nd Hospital of Jilin University, Changchun 130041, Jilin, China; Department of Ophthalmology, Shanghai General Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai…

Continue Reading CircRNA in ocular neovascular diseases: Fundamental mechanism and clinical potential

An ultrasensitive Cd2+ detection biosensor based on DNAzyme and CRISPR/Cas12a coupled with hybridization chain reaction

. 2023 Dec 1:1283:341950. doi: 10.1016/j.aca.2023.341950. Epub 2023 Oct 23. Affiliations Expand Affiliations 1 Co-Innovation Center for Sustainable Forestry in Southern China, Key Laboratory of State Forestry and Grassland Administration on Subtropical Forest Biodiversity Conservation, College of Life Sciences, Nanjing Forestry University, Nanjing, 210037, China. 2 Jiangsu Key Laboratory for…

Continue Reading An ultrasensitive Cd2+ detection biosensor based on DNAzyme and CRISPR/Cas12a coupled with hybridization chain reaction

Integration of xeno-free single-cell cloning in CRISPR-mediated DNA editing of human iPSCs improves homogeneity and methodological efficiency of cellular disease modeling

. 2023 Nov 8:S2213-6711(23)00415-0. doi: 10.1016/j.stemcr.2023.10.013. Online ahead of print. Affiliations Expand Affiliations 1 Turner Institute for Brain and Mental Health, School of Psychological Sciences, Monash University, Melbourne, VIC, Australia. 2 Department of Anatomy & Developmental Biology, Monash University, Melbourne, VIC 3800, Australia; Development and Stem Cells Program, Monash Biomedicine…

Continue Reading Integration of xeno-free single-cell cloning in CRISPR-mediated DNA editing of human iPSCs improves homogeneity and methodological efficiency of cellular disease modeling

EMDB < EMD-16930

Field: Choose…EMDB IDTitleAuthorORCIDEM methodCurrent statusDeposition dateRelease dateDeposition siteLast processing siteFitted modelsRaw dataResolutionResolution methodSoftwareLigand nameComplex nameDomain nameDrug nameGO term nameInterPro term nameChEBI term nameExternal reference Publication titlePublication yearJournalPublication author Sample typeSample nameOrganismOrganism (NCBI code)StrainOrganTissueCellOrganelleCellular LocationE.C. numberMolecular Weight methodMolecular Weight (Da)Recombinant ExpressionRecombinant organismRecombinant organism (NCBI code)Recombinant strainRecombinant expression cellRecombinant expression plasmidDNA/RNA classificationDNA/RNA…

Continue Reading EMDB < EMD-16930

Molecular detection and whole genome sequencing of Pectobacterium and Dickeya, the casual agents of soft rot disease in lettuce

Azadmanesh S, Marefat A (2013) and Kayhan Azadmanesh. Detection of Pectobacteria causal agents of potato soft rot in north-western provinces of Iran. J Plant Pathol Microbiol 4(1) Babadoost M (1990) Bacterial soft rot of vegetables, fruits and ornamentals. Rep Plant Dis 943:7 Google Scholar  Ben Fekih I, Zhang C, Li…

Continue Reading Molecular detection and whole genome sequencing of Pectobacterium and Dickeya, the casual agents of soft rot disease in lettuce

Single-cell RNAseq analysis of spinal locomotor circuitry in larval zebrafish

. 2023 Nov 17:12:RP89338. doi: 10.7554/eLife.89338. Affiliations Expand Affiliation 1 Vollum Institute, Oregon Health & Science University, Portland, United States. Item in Clipboard Jimmy J Kelly et al. Elife. 2023. Show details Display options Display options Format AbstractPubMedPMID . 2023 Nov 17:12:RP89338. doi: 10.7554/eLife.89338. Affiliation 1 Vollum Institute, Oregon Health &…

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A smooth tubercle bacillus from Ethiopia phylogenetically close to the Mycobacterium tuberculosis complex

Houben, R. M. G. J. & Dodd, P. J. The global burden of latent tuberculosis infection: a re-estimation using mathematical modeling. PLoS Med. 13, e1002152 (2016). Article  PubMed  PubMed Central  Google Scholar  Cohen, A., Mathiasen, V. D., Schön, T. & Wejse, C. The global prevalence of latent tuberculosis: a systematic…

Continue Reading A smooth tubercle bacillus from Ethiopia phylogenetically close to the Mycobacterium tuberculosis complex

Investigation of antimicrobial susceptibility and genetic diversity among Staphylococcus pseudintermedius isolated from dogs in Rio de Janeiro

Devriese, L. A. et al. Staphylococcus pseudintermedius sp. nov., a coagulase-positive species from animals. Int. J. Syst. Evol. Microbiol. 1569–1573. doi.org/10.1099/ijs.0.63413-0 (2005). Gharsa, H. et al. Antimicrobial resistance, virulence genes, and genetic lineages of Staphylococcus pseudintermedius in healthy dogs in Tunisia. Microb. Ecol. 66, 363–368 (2013). Article  CAS  PubMed  Google…

Continue Reading Investigation of antimicrobial susceptibility and genetic diversity among Staphylococcus pseudintermedius isolated from dogs in Rio de Janeiro

Simultaneous analysis of seven 16S rRNA hypervariable gene regions increases efficiency in marine bacterial diversity detection

doi: 10.1111/1462-2920.16530. Online ahead of print. Affiliations Expand Affiliations 1 Ecology Group, Rheinland-Pfälzische Technische Universität Kaiserslautern-Landau, Kaiserslautern, Germany. 2 Marine Ecosystems Functioning, AZTI, Marine Research, Basque Research and Technology Alliance, Pasia, Gipuzkoa, Spain. 3 Molecular Ecology Group, Rheinland-Pfälzische Technische Universität Kaiserslautern-Landau, Kaiserslautern, Germany. 4 SeqIT, Laboratory for Molecular Diagnostics and…

Continue Reading Simultaneous analysis of seven 16S rRNA hypervariable gene regions increases efficiency in marine bacterial diversity detection

Quantitative analysis of mitochondrial DNA in porcine-mouse cloned embryos

. 2023 Jul;65(4):767-778. doi: 10.5187/jast.2023.e2. Epub 2023 Jul 30. Affiliations Expand Affiliation 1 Division of Animal & Dairy Science, Chungnam National University, Daejeon 34134, Korea. Item in Clipboard Hyeonyeong Shin et al. J Anim Sci Technol. 2023 Jul. Show details Display options Display options Format AbstractPubMedPMID . 2023 Jul;65(4):767-778. doi: 10.5187/jast.2023.e2….

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Gotta Get Rid of It All: Total Plaque Clearance Key for Clinical Benefit

18 Nov 2023 As researchers parse what makes amyloid immunotherapy work, one answer keeps bubbling up: Take out all plaque quickly, so that clinical benefits have time to show up. At last month’s Clinical Trials on Alzheimer’s Disease conference, held October 24 to 27 in Boston and online, several talks…

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Prediction of CHO cell line stability using expression of DNA repair genes

doi: 10.1002/biot.202300425. Online ahead of print. Affiliations Expand Affiliations 1 Department of Chemical and Biomolecular Engineering, University of Delaware, Newark, Delaware, USA. 2 National Institute for Innovation in Manufacturing Biopharmaceuticals, Newark, Delaware, USA. 3 Pfizer, Inc, 875 Chesterfield Pkwy W, Chesterfield, Missouri, USA. Item in Clipboard Lauren T Cordova et al….

Continue Reading Prediction of CHO cell line stability using expression of DNA repair genes

Shotgun metagenomes from productive lakes in an urban region of Sweden

Williamson, C. E., Saros, J. E., Vincent, W. F. & Smol, J. P. Lakes and reservoirs as sentinels, integrators, and regulators of climate change. Limnology and Oceanography 54, 2273–2282, doi.org/10.4319/lo.2009.54.6_part_2.2273 (2009). Article  ADS  Google Scholar  Cavicchioli, R. et al. 2019. Scientists’ warning to humanity: microorganisms and climate change. Nature Reviews…

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The analysis of the genotype of Sapovirus outbreaks in Zhejiang Province | Virology Journal

Leblanc D, Inglis GD, Boras VF, Brassard J, Houde A. The prevalence of enteric RNA viruses in stools from diarrheic and non-diarrheic people in southwestern Alberta, Canada. Arch Virol. 2017;162(1):117–28. Article  CAS  PubMed  Google Scholar  Becker-Dreps S, González F, Bucardo F. Sapovirus: an emerging cause of childhood diarrhea. Curr Opin…

Continue Reading The analysis of the genotype of Sapovirus outbreaks in Zhejiang Province | Virology Journal

Infant microbiome cultivation and metagenomic analysis reveal Bifidobacterium 2’-fucosyllactose utilization can be facilitated by coexisting species

Stewart, C. J. et al. Temporal development of the gut microbiome in early childhood from the TEDDY study. Nature 562, 583–588 (2018). Article  CAS  ADS  PubMed  PubMed Central  Google Scholar  Tamburini, S., Shen, N., Wu, H. C. & Clemente, J. C. The microbiome in early life: implications for health outcomes….

Continue Reading Infant microbiome cultivation and metagenomic analysis reveal Bifidobacterium 2’-fucosyllactose utilization can be facilitated by coexisting species

CRISPR/Cas12a trans-cleavage triggered by cleavage ligation of dumbbell DNA for specific detection of human 8-oxoguanine DNA glycosylase activity

Poetsch AR (2020) The genomics of oxidative DNA damage, repair, and resulting mutagenesis. Comput Struct Biotechnol J 18:207–219. doi.org/10.1016/j.csbj.2019.12.013 Article  CAS  PubMed  PubMed Central  Google Scholar  Ba X, Aguilera-Aguirre L, Rashid QT, Bacsi A, Radak Z, Sur S, Hosoki K, Hegde ML, Boldogh I (2014) The role of 8-oxoguanine DNA…

Continue Reading CRISPR/Cas12a trans-cleavage triggered by cleavage ligation of dumbbell DNA for specific detection of human 8-oxoguanine DNA glycosylase activity

Multiple micronutrient deficiencies in early life cause multi-kingdom alterations in the gut microbiome and intrinsic antibiotic resistance genes in mice

Han, X., Ding, S., Lu, J. & Li, Y. Global, regional, and national burdens of common micronutrient deficiencies from 1990 to 2019: a secondary trend analysis based on the Global Burden of Disease 2019 study. eClinicalMedicine 44, 101299 (2022). Article  PubMed  PubMed Central  Google Scholar  Bailey, R. L., West, K….

Continue Reading Multiple micronutrient deficiencies in early life cause multi-kingdom alterations in the gut microbiome and intrinsic antibiotic resistance genes in mice

Bacterial genome size and gene functional diversity negatively correlate with taxonomic diversity along a pH gradient

Fierer, N. & Jackson, R. B. The diversity and biogeography of soil bacterial communities. Proc. Natl. Acad. Sci. USA. 103, 626–631 (2006). Article  ADS  CAS  PubMed  PubMed Central  Google Scholar  Gao, C. & Guo, L. Progress on microbial species diversity, community assembly and functional traits. Biodivers. Sci. 30, 22429 (2022)….

Continue Reading Bacterial genome size and gene functional diversity negatively correlate with taxonomic diversity along a pH gradient

The Bread Wheat Reference Genome Sequence

Adams MD, Celnicke SE, Holt RA, Evans CA et al (2000) The genome sequence of Drosophila melanogaster. Science 287:2185–2195. doi.org/10.1126/science.287.5461.2185 CrossRef  PubMed  Google Scholar  Alonge M, Shumata A, Pulu D, Zimin AV, Salzberg SL (2020) Chromosome-scale assembly of the bread wheat genome reveals thousands of additional gene copies. Genetics 216:599–608….

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Wheat Sequencing: The Pan-Genome and Opportunities for Accelerating Breeding

Abberton M, Batley J, Bentley A, Bryant J, Cai H, Cockram J, Costa de Oliveira A, Cseke LJ, Dempewolf H, De Pace C, Edwards D, Gepts P, Greenland A, Hall AE, Henry R, Hori K, Howe GT, Hughes S, Humphreys M, Lightfoot D, Marshall A, Mayes S, Nguyen HT, Ogbonnaya…

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Exploring the interplay between PARP1 and circRNA biogenesis and function

Review Wiley Interdiscip Rev RNA . 2023 Nov 13:e1823. doi: 10.1002/wrna.1823. Online ahead of print. Affiliations Expand Affiliations 1 Department of Molecular and Cellular Biochemistry, University of Kentucky, Lexington, Kentucky, USA. 2 Department of Epigenetics, Van Andel Research Institute, Grand Rapids, Michigan, USA. Item in Clipboard Review Hejer Dhahri et al….

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T-Cell Engaging Antibodies in Diffuse Large B Cell Lymphoma-An Update

Review . 2023 Oct 25;12(21):6737. doi: 10.3390/jcm12216737. Affiliations Expand Affiliations 1 Alfred Health, Melbourne, VIC 3004, Australia. 2 St. Vincent’s Hospital, Melbourne, Fitzroy, VIC 3065, Australia. Item in Clipboard Review Shalini Balendran et al. J Clin Med. 2023. Show details Display options Display options Format AbstractPubMedPMID . 2023 Oct 25;12(21):6737. doi:…

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Clinically relevant antibiotic resistance genes are linked to a limited set of taxa within gut microbiome worldwide

Murray, C. J. et al. Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis. Lancet 399, 629–655 (2022). Article  CAS  Google Scholar  Brito, I. L. et al. Mobile genes in the human microbiome are structured from global to individual scales. Nature 535, 435–439 (2016). Article  ADS  CAS  PubMed …

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Oncogenic activation revealed by FGFR2 genetic alterations in intrahepatic cholangiocarcinomas | Cell & Bioscience

Everhart JE, Ruhl CE. Burden of digestive diseases in the United States Part III: Liver, biliary tract, and pancreas. Gastroenterology. 2009;136(4):1134–44. Article  PubMed  Google Scholar  Khan SA, Thomas HC, Davidson BR, Taylor-Robinson SD. Cholangiocarcinoma. Lancet. 2005;366(9493):1303–14. Article  PubMed  Google Scholar  Nakanuma Y, Klimstra DS, Komuta M, Zen Y (2019) Intrahepatic…

Continue Reading Oncogenic activation revealed by FGFR2 genetic alterations in intrahepatic cholangiocarcinomas | Cell & Bioscience

Genetic manipulation of giant viruses and their host, Acanthamoeba castellanii

Rayamajhee, B., Willcox, M. D., Henriquez, F. L., Petsoglou, C. & Carnt, N. Acanthamoeba keratitis: an increasingly common infectious disease of the cornea. Lancet Microbe 2, e345–e346 (2021). PubMed  Google Scholar  Guimaraes, A. J., Gomes, K. X., Cortines, J. R., Peralta, J. M. & Peralta, R. H. Acanthamoeba spp. as…

Continue Reading Genetic manipulation of giant viruses and their host, Acanthamoeba castellanii

Bacteria can maintain rRNA operons solely on plasmids for hundreds of millions of years

Egan, E. S., Fogel, M. A. & Waldor, M. K. Divided genomes: negotiating the cell cycle in prokaryotes with multiple chromosomes. Mol. Microbiol. 56, 1129–1138 (2005). Article  CAS  PubMed  Google Scholar  Harrison, P. W., Lower, R. P., Kim, N. K. & Young, J. P. Introducing the bacterial ‘chromid’: not a…

Continue Reading Bacteria can maintain rRNA operons solely on plasmids for hundreds of millions of years

Establishment of a prognostic signature based on fatty acid metabolism genes in HCC associated with hepatitis B | BMC Gastroenterology

Sung H, Ferlay J, Siegel RL, Laversanne M, Soerjomataram I, Jemal A, et al. Global Cancer statistics 2020: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA Cancer J Clin. 2021;71:209–49. Article  PubMed  Google Scholar  Chen W, Zheng R, Baade PD, Zhang S, Zeng H,…

Continue Reading Establishment of a prognostic signature based on fatty acid metabolism genes in HCC associated with hepatitis B | BMC Gastroenterology

PMID multiple pdfs download using R

Hello everyone, I have done a mesh search in pubmed for some certain keywords, I have got PMIDs for the result, Now I want to download all pdfs using those PMIDs in R. I have used this R script install.packages(c(“rentrez”, “rcrossref”, “xml2”)) library(rentrez) library(rcrossref) library(xml2) get_doi <- function(pmid) { query…

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Detection of cellular traction forces via the force-triggered Cas12a-mediated catalytic cleavage of a fluorogenic reporter strand

Orr, A. W., Helmke, B. P., Blackman, B. R. & Schwartz, M. A. Mechanisms of mechanotransduction. Dev. Cell 10, 11–20 (2006). Article  CAS  PubMed  Google Scholar  Zhang, Y. et al. Platelet integrins exhibit anisotropic mechanosensing and harness piconewton forces to mediate platelet aggregation. Proc. Natl Acad. Sci. USA 115, 325–330…

Continue Reading Detection of cellular traction forces via the force-triggered Cas12a-mediated catalytic cleavage of a fluorogenic reporter strand

Robust airway microbiome signatures in acute respiratory failure and hospital-acquired pneumonia

He, Q. et al. The epidemiology and clinical outcomes of ventilator-associated events among 20,769 mechanically ventilated patients at intensive care units: an observational study. Crit. Care 25, 44 (2021). Article  PubMed  PubMed Central  Google Scholar  Bellani, G. et al. Epidemiology, patterns of care, and mortality for patients with acute respiratory…

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The Imageable Genome | Nature Communications

For the Imageable Genome project, we developed a data pipeline that identifies texts containing radiotracers, recognizes and extracts names of radiotracers from texts, filters for clinically relevant radiotracers and their associated targets, and translates protein names, i.e. of radiotracer targets, to names of the coding genes. We then downloaded the…

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Erythroderma combined with deeper dermal dermatophytosis due to Trichophyton rubrum in a patient with myasthenia gravis: first case report and literature review | BMC Infectious Diseases

de Hoog GS, Dukik K, Monod M, Packeu A, Stubbe D, Hendrickx M, et al. Toward a novel multilocus phylogenetic taxonomy for the dermatophytes. Mycopathologia. 2017;182(1–2):5–31. Article  PubMed  Google Scholar  Segal E, Elad D. Human and zoonotic dermatophytoses: epidemiological aspects. Front Microbiol. 2021;12:713532. Article  PubMed  PubMed Central  Google Scholar  Burstein…

Continue Reading Erythroderma combined with deeper dermal dermatophytosis due to Trichophyton rubrum in a patient with myasthenia gravis: first case report and literature review | BMC Infectious Diseases

A paradox of choice: Sequencing therapy in relapsed/refractory diffuse large B-cell lymphoma

Review doi: 10.1016/j.blre.2023.101140. Online ahead of print. Affiliations Expand Affiliations 1 Department of Hematology and Oncology, Cleveland Clinic Taussig Cancer Center, Cleveland, OH, United States of America. 2 Department of Hematology and Oncology, Cleveland Clinic Taussig Cancer Center, Cleveland, OH, United States of America; Case Comprehensive Cancer Center, Cleveland, OH,…

Continue Reading A paradox of choice: Sequencing therapy in relapsed/refractory diffuse large B-cell lymphoma

Disproportionate role of nuclear-encoded proteins in organismal and mitochondrial thermal performance in a copepod

. 2023 Nov 10:jeb.246085. doi: 10.1242/jeb.246085. Online ahead of print. Affiliations Expand Affiliation 1 Department of Integrative Biology, Oregon State University, Corvallis, OR 97331, USA. Item in Clipboard Kamron L Kayhani et al. J Exp Biol. 2023. Show details Display options Display options Format AbstractPubMedPMID . 2023 Nov 10:jeb.246085. doi: 10.1242/jeb.246085….

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Retracted: Integrated Analysis of Circular RNA-Associated ceRNA Network Reveals Potential circRNA Biomarkers in Human Breast Cancer

Retraction of Publication . 2023 Nov 1:2023:9780596. doi: 10.1155/2023/9780596. eCollection 2023. Item in Clipboard Retraction of Publication Computational And Mathematical Methods In Medicine. Comput Math Methods Med. 2023. Show details Display options Display options Format AbstractPubMedPMID . 2023 Nov 1:2023:9780596. doi: 10.1155/2023/9780596. eCollection 2023. Item in Clipboard Cite Display options…

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Addgene: pAAV-FLEX-SaCas9-U6-sgRNA Citations

Originally described in: Conditional Single Vector CRISPR/SaCas9 Viruses for Efficient Mutagenesis in the Adult Mouse Nervous System.Hunker AC, Soden ME, Krayushkina D, Heymann G, Awatramani R, Zweifel LS Cell Rep. 2020 Mar 24;30(12):4303-4316.e6. doi: 10.1016/j.celrep.2020.02.092. PubMed Journal Articles Citing pAAV-FLEX-SaCas9-U6-sgRNA Articles CRISPR/SaCas9 mutagenesis of stromal interaction molecule 1 in proopiomelanocortin…

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[Molecular diagnostics for vitreoretinal lymphoma]

Review doi: 10.1007/s00292-023-01251-z. Online ahead of print. [Article in German] Irina Bonzheim  1 , Julia Salmerón-Villalobos  2 , Daniela Süsskind  3 , Peter Szurman  4 , Florian Gekeler  3   5 , Martin S Spitzer  6 , Itziar Salaverria  2 , Elias Campo  2 , Sarah E Coupland  7 , Leticia Quintanilla-Martinez  8 , Falko Fend  8 Affiliations Expand Affiliations…

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Genomics of soil depth niche partitioning in the Thaumarchaeota family Gagatemarchaeaceae

Sheridan, P. O. et al. Gene duplication drives genome expansion in a major lineage of Thaumarchaeota. Nat. Commun. 11, 1–12 (2020). Article  Google Scholar  Sheridan, P. O., Meng, Y., Williams, T. A. & Gubry-Rangin, C. Recovery of Lutacidiplasmatales archaeal order genomes suggests convergent evolution in Thermoplasmatota. Nat. Commun. 13, 1–13…

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What is CYP2D6 responsible for?

The CYP2D6 enzyme catalyses the metabolism of a large number of clinically important drugs including antidepressants, neuroleptics, some antiarrhythmics, lipophilic β-adrenoceptor blockers and opioids. Takedown request View complete answer on ncbi.nlm.nih.gov What is the role of the CYP2D6 enzyme? One such member, CYP2D6 is involved in the metabolism of a…

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Two sympatric lineages of Australian Cnestus solidus share Ambrosiella symbionts but not Wolbachia

Andersen HF, Jordal BH, Kambestad M, Kirkendall LR (2012) Improbable but true: the invasive inbreeding ambrosia beetle Xylosandrus morigerus has generalist genotypes. Ecol Evol 2:247–257 Article  PubMed  PubMed Central  Google Scholar  Arif S, Gerth M, Hone‐Millard WG, Nunes MDS, Dapporto L, Shreeve TG (2021) Evidence for multiple colonisations and Wolbachia…

Continue Reading Two sympatric lineages of Australian Cnestus solidus share Ambrosiella symbionts but not Wolbachia

Transcriptomic analysis reveals that RasGEF1b deletion alters basal and LPS-induced expression of genes involved in chemotaxis and cytokine responses in macrophages

Rojas, J. M. & Santos, E. Ras-Gefs and Ras Gaps. In RAS Family GTPases Vol. 4 (Springer, 2006). Google Scholar  Broek, D. et al. The S. cerevisiae CDC25 gene product regulates the RAS/adenylate cyclase pathway. Cell 48, 789–799 (1987). Article  CAS  PubMed  Google Scholar  van Dam, T. J. P., Rehmann,…

Continue Reading Transcriptomic analysis reveals that RasGEF1b deletion alters basal and LPS-induced expression of genes involved in chemotaxis and cytokine responses in macrophages

In silico prospecting of the mtDNA of Macrobrachium amazonicum from transcriptome data | BMC Genomics

Bentes B, Martinelli J, Souza L, Cavalcante D, Almeida M, Isaac V. Spatial distribution of the amazon river prawn Macrobrachium Amazonicum (Heller, 1862) (Decapoda, Caridea, Palaemonidae) in two perennial creeks of an estuary on the northern coast of Brazil (Guajará Bay, Belém, Pará). Brazilian J Biol. 2011;71:925–35. Article  Google Scholar …

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A tRNA-modifying enzyme facilitates RNase P activity in Arabidopsis nuclei

Chapeville, F. et al. On the role of soluble ribonucleic acid in coding for amino acids. Proc. Natl Acad. Sci. Usa. 48, 1086–1092 (1962). Article  CAS  PubMed  PubMed Central  Google Scholar  Korostelev, A., Trakhanov, S., Laurberg, M. & Noller, H. F. Crystal structure of a 70S ribosome–tRNA complex reveals functional…

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A software tool to adjust codeine dose based on CYP2D6 gene-pair polymorphisms and drug-drug interactions

Review doi: 10.1038/s41397-023-00318-7. Online ahead of print. Affiliations Expand Affiliations 1 Pharmaceutical Sciences Department, School of Pharmacy, Lebanese American University, Byblos, Lebanon. ysaab@lau.edu.lb. 2 Electrical and Computer Engineering Department, School of Engineering, Lebanese American University, Byblos, Lebanon. zahi.nakad@lau.edu.lb. Item in Clipboard Review Yolande Saab et al. Pharmacogenomics J. 2023. Show details…

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Asymmetric distribution of parental H3K9me3 in S phase silences L1 elements

doi: 10.1038/s41586-023-06711-3. Online ahead of print. Zhiming Li #  1   2   3   4 , Shoufu Duan #  1   2   3   4 , Xu Hua  1   2   3   4 , Xiaowei Xu  1   2   3   4 , Yinglu Li  4 , Demis Menolfi  1 , Hui Zhou …

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Real-time analysis of the cancer genome and fragmentome from plasma and urine cell-free DNA using nanopore sequencing

doi: 10.15252/emmm.202217282. Online ahead of print. Ymke van der Pol #  1   2 , Normastuti Adhini Tantyo #  1   2 , Nils Evander  1   2 , Anouk E Hentschel  1   3 , Birgit Mm Wever  1   2 , Jip Ramaker  1   2 , Sanne Bootsma  4   5   6 , Marieke F…

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HDAC3 deacetylates H3K27ac and H3K9ac on the TrkC promoter to exacerbate sevoflurane-induced neurotoxicity

Apai C, Shah R, Tran K, Pandya Shah S (2021) Anesthesia and the developing brain: a review of sevoflurane-induced neurotoxicity in pediatric populations. Clin Ther 43:762–778 Article  CAS  PubMed  Google Scholar  Chai G et al (2022) Sevoflurane inhibits histone acetylation and contributes to cognitive dysfunction by enhancing the expression of…

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Metagenome-assembled genomes from High Arctic glaciers highlight the vulnerability of glacier-associated microbiota and their activities to habitat loss

doi: 10.1099/mgen.0.001131. Affiliations Expand Affiliations 1 Department of Life Sciences (DLS), Aberystwyth University, Wales, UK. 2 Interdisciplinary Centre for Environmental Microbiology (iCEM), Aberystwyth University, Wales, UK. 3 Department of Geography and Earth Sciences (DGES), Aberystwyth University, Wales, UK. 4 Present address: Department of Pathobiology and Population Sciences, The Royal Veterinary…

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Genome-wide meta-analysis, functional genomics and integrative analyses implicate new risk genes and therapeutic targets for anxiety disorders

Kessler, R. C. et al. Lifetime prevalence and age-of-onset distributions of DSM-IV disorders in the National Comorbidity Survey Replication. Arch. Gen. Psychiatry 62, 593–602 (2005). Article  PubMed  Google Scholar  Kessler, R. C. et al. Prevalence, persistence, and sociodemographic correlates of DSM-IV disorders in the National Comorbidity Survey Replication Adolescent Supplement….

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Genome interpretation in a federated learning context allows the multi-center exome-based risk prediction of Crohn’s disease patients

Goodwin, S., McPherson, J. D. & Richard McCombie, W. Coming of age: Ten years of next-generation sequencing technologies. Nat. Rev. Genet. 17(6), 333–351 (2016). Article  CAS  PubMed  PubMed Central  Google Scholar  Van Dijk, E. L., Auger, H., Jaszczyszyn, Y. & Thermes, C. Ten years of next-generation sequencing technology. Trends Genet….

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Shallow whole genome sequencing approach to detect Homologous Recombination Deficiency in the PAOLA-1/ENGOT-OV25 phase-III trial

Polak P, Kim J, Braunstein LZ, Karlic R, Haradhavala NJ, Tiao G, et al. A mutational signature reveals alterations underlying deficient homologous recombination repair in breast cancer. Nat Genet. 2017;49:1476–86. Article  CAS  PubMed  PubMed Central  Google Scholar  Birkbak NJ, Wang ZC, Kim JY, Eklund AC, Li Q, Tian R, et…

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Analysis of microbial composition and sharing in low-biomass human milk samples: a comparison of DNA isolation and sequencing techniques

Victora CG, Bahl R, Barros AJD, França GVA, Horton S, Krasevec J, et al. Breastfeeding in the 21st century: Epidemiology, mechanisms, and lifelong effect. Lancet. 2016;387:475–90. Article  PubMed  Google Scholar  Bardanzellu F, Fanos V, Strigini FAL, Artini PG, Peroni DG. Human breast milk: Exploring the linking ring among emerging components….

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Divergent mechanisms of reduced growth performance in Betula ermanii saplings from high-altitude and low-latitude range edges

Aizawa M, Yoshimaru H, Saito H, Katsuki T, Kawahara T, Kitamura K et al. (2009) Range‐wide genetic structure in a north‐east Asian spruce (Picea jezoensis) determined using nuclear microsatellite markers. J Biogeogr 36(5):996–1007 Article  Google Scholar  Alexander DH, Novembre J, Lange K (2009) Fast model-based estimation of ancestry in unrelated…

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Apoptotic stress causes mtDNA release during senescence and drives the SASP – ePrints

Apoptotic stress causes mtDNA release during senescence and drives the SASP Lookup NU author(s): Hanna Salmonowicz, Dr James ChapmanORCiD, George Kelly, Dr Laura Greaves, Professor Derek Mann, Dr Viktor Korolchuk Downloads Full text for this publication is not currently held within this repository….

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Characterization of intrinsic and effective fitness changes caused by temporarily fixed mutations in the SARS-CoV-2 spike E484 epitope and identification of an epistatic precondition for the evolution of E484A in variant Omicron | Virology Journal

Cele S, Gazy I, Jackson L, Hwa SH, Tegally H, Lustig G, et al. Escape of SARS-CoV-2 501Y.V2 from neutralization by convalescent plasma. Nature. 2021;593(7857):142–6. Article  CAS  PubMed  PubMed Central  Google Scholar  Planas D, Bruel T, Grzelak L, Guivel-Benhassine F, Staropoli I, Porrot F, et al. Sensitivity of infectious SARS-CoV-2…

Continue Reading Characterization of intrinsic and effective fitness changes caused by temporarily fixed mutations in the SARS-CoV-2 spike E484 epitope and identification of an epistatic precondition for the evolution of E484A in variant Omicron | Virology Journal

Early detection of hepatocellular carcinoma via no end-repair enzymatic methylation sequencing of cell-free DNA and pre-trained neural network | Genome Medicine

Sung H, Ferlay J, Siegel RL, Laversanne M, Soerjomataram I, Jemal A, Bray F. Global cancer statistics 2020: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA Cancer J Clin. 2021;71(3):209–49. Article  PubMed  Google Scholar  Llovet JM, Kelley RK, Villanueva A, Singal AG, Pikarsky E,…

Continue Reading Early detection of hepatocellular carcinoma via no end-repair enzymatic methylation sequencing of cell-free DNA and pre-trained neural network | Genome Medicine

Mechanism and therapeutic potential of targeting cGAS-STING signaling in neurological disorders | Molecular Neurodegeneration

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The power and potential of mitochondria transfer

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EMDB < Search results

Field: Choose…EMDB IDTitleAuthorORCIDEM methodCurrent statusDeposition dateRelease dateDeposition siteLast processing siteFitted modelsRaw dataResolutionResolution methodSoftwareLigand nameComplex nameDomain nameDrug nameGO term nameInterPro term nameChEBI term nameExternal reference Publication titlePublication yearJournalPublication author Sample typeSample nameOrganismOrganism (NCBI code)StrainOrganTissueCellOrganelleCellular LocationE.C. numberMolecular Weight methodMolecular Weight (Da)Recombinant ExpressionRecombinant organismRecombinant organism (NCBI code)Recombinant strainRecombinant expression cellRecombinant expression plasmidDNA/RNA classificationDNA/RNA…

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TNRC18 engages H3K9me3 to mediate silencing of endogenous retrotransposons

Padeken, J., Methot, S. P. & Gasser, S. M. Establishment of H3K9-methylated heterochromatin and its functions in tissue differentiation and maintenance. Nat. Rev. Mol. Cell Biol. 23, 623–640 (2022). Article  CAS  PubMed  PubMed Central  Google Scholar  Tchasovnikarova, I. A. et al. Epigenetic silencing by the HUSH complex mediates position-effect variegation…

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Latent human herpesvirus 6 is reactivated in CAR T cells

Spanjaart, A. M., van der Valk, F. M., van Rooijen, G., Brouwer, M. C. & Kersten, M. J. Confused about confusion. N. Engl. J. Med. 386, 80–87 (2022). Article  PubMed  Google Scholar  Haradhvala, N. J. et al. Distinct cellular dynamics associated with response to CAR-T therapy for refractory B-cell lymphoma….

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Characterization of the microbiome and volatile compounds in anal gland secretions from domestic cats (Felis catus) using metagenomics and metabolomics

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Inhibition of glutaminase-1 in DLBCL potentiates venetoclax-induced antitumor activity by promoting oxidative stress

. 2023 Nov 7:bloodadvances.2023010964. doi: 10.1182/bloodadvances.2023010964. Online ahead of print. Beatriz Gomez Solsona  1 , Heike Horn  2 , Anja Schmitt  3 , Wendan Xu  4 , Philip Bucher  5 , Aylin Heinrich  1 , Sabrina Kalmbach  6 , Nina Kreienkamp  3 , Maik Franke  3 , Florian Wimmers  1 , Laurentz Schuhknecht  7 , Andreas Rosenwald  8 , Mattia Zampieri  9…

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Integrative transcriptome- and DNA methylation analysis of brain tissue from the temporal pole in suicide decedents and their controls

World Health Organization. Facts sheet: suicide. www.who.int/news-room/fact-sheets/detail/suicide. National Institute of Mental Health. Suicide. www.nimh.nih.gov/health/statistics/suicide. Nock MK, Hwang I, Sampson N, Kessler RC, Angermeyer M, Beautrais A, et al. Cross-national analysis of the associations among mental disorders and suicidal behavior: findings from the WHO world mental health surveys. PLoS Med. 2009;6:e1000123….

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Landscape genomics reveals adaptive genetic differentiation driven by multiple environmental variables in naked barley on the Qinghai-Tibetan Plateau

Abebe TD, Naz AA, Léon J (2015) Landscape genomics reveal signatures of local adaptation in barley (Hordeum vulgare L.). Front Plant Sci 6:813 Article  PubMed  PubMed Central  Google Scholar  Alexander DH, Novembre J, Lange K (2009) Fast model-based estimation of ancestry in unrelated individuals. Genome Res 19:1655–1664 Article  CAS  PubMed …

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LAMP assay coupled with a CRISPR/Cas12a system for the rapid and ultrasensitive detection of porcine circovirus-like virus in the field

Shulman LM, Davidson I. Viruses with circular single-stranded DNA genomes are everywhere! Annual Rev Virolog. 2017;4(1):159–80. doi.org/10.1146/annurev-virology-101416-041953. Article  CAS  Google Scholar  Yang K, Zhang M, Liu Q, Cao Y, Zhang W, Liang Y, Song X, Ji K, Shao Y, Qi K, Tu J. Epidemiology and evolution of emerging porcine circovirus-like…

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Development of a rapid, sensitive detection method for SARS-CoV-2 and influenza virus based on recombinase polymerase amplification combined with CRISPR-Cas12a assay

. 2023 Nov;95(11):e29215. doi: 10.1002/jmv.29215. Yuning Wang  1 , Liqiang Wu  1 , Xiaomei Yu  2 , Gang Wang  1 , Ting Pan  2 , Zhao Huang  2 , Ting Cui  2 , Tianxun Huang  1 , Zhentao Huang  1 , Libo Nie  2 , Chungen Qian  3 Affiliations Expand Affiliations 1 Department of Reagent Research and Development, Shenzhen YHLO…

Continue Reading Development of a rapid, sensitive detection method for SARS-CoV-2 and influenza virus based on recombinase polymerase amplification combined with CRISPR-Cas12a assay

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Review . 2023 Nov 7:33197231213192. doi: 10.1177/00033197231213192. Online ahead of print. Affiliations Expand Affiliations 1 School of Biological and Pharmaceutical Engineering, Lanzhou Jiaotong University, Lanzhou, China. 2 School of Basic Medical Sciences, Lanzhou University, Lanzhou, China. 3 Gansu Province Medical Genetics Center, Gansu Provincial Clinical Research Center for Birth Defects…

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Prognostic potential of circulating cell free mitochondrial DNA levels in COVID-19 patients

Wang C, Horby PW, Hayden FG, Gao GF (2020) A novel coronavirus outbreak of global health concern. The Lancet 395(10223):470–473 Article  CAS  Google Scholar  Lynch SM, Guo G, Gibson DS, Bjourson AJ, Rai TS (2021) Role of senescence and aging in SARS-CoV-2 infection and COVID-19 disease. Cells 10(12):3367 Article  CAS …

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doi: 10.2217/bmm-2023-0369. Online ahead of print. Affiliations Expand Affiliations 1 Department of Cardiology, The First People’s Hospital of Lianyungang, Lianyungang, 222002, Jiangsu PR, China. 2 Department of Cardiology, Hainan General Hospital, Haikou, 570311, Hainan PR, China. Item in Clipboard Ming-Zhu Li et al. Biomark Med. 2023. Show details Display options Display…

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The correlation between gut microbiome and atrial fibrillation: pathophysiology and therapeutic perspectives | Military Medical Research

Kim JE, Li B, Fei L, Horne R, Lee D, Loe AK, et al. Gut microbiota promotes stem cell differentiation through macrophage and mesenchymal niches in early postnatal development. Immunity. 2022;55(12):2300-17.e6. Article  CAS  PubMed  Google Scholar  Xiao W, Su J, Gao X, Yang H, Weng R, Ni W, et al….

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Clarivate Content Editor Vacancy – Biotech, Biochem Apply

“Exciting Job Opening at Clarivate for Biotech Enthusiasts – Apply Now!” Clarivate Content Editor Vacancy – Biotech, Biochem, Bioinformatics Apply Associate Content Editor – GENESEQ Job Number: JREQ124259 City, ST: Chennai, TN About the Company Clarivate is a leading global provider of trusted insights and analytics to accelerate the pace…

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Chromosome-level genomes of three key Allium crops and their trait evolution

Chase, M. W. et al. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV. Bot. J. Linn. Soc. 181, 1–20 (2016). Article  Google Scholar  Jones, M. G. et al. Biosynthesis of the flavour precursors of onion and garlic. J. Exp. Bot….

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The evolutionary innovation of root suberin lamellae contributed to the rise of seed plants

Fich, E. A., Segerson, N. A. & Rose, J. K. C. The plant polyester cutin: biosynthesis, structure, and biological roles. Annu. Rev. Plant Biol. 67, 207–233 (2016). Article  CAS  PubMed  Google Scholar  Geldner, N. The endodermis. Annu. Rev. Plant Biol. 64, 531–558 (2013). Article  CAS  PubMed  Google Scholar  Calvo-Polanco, M….

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Patient-derived xenograft models of ALK+ ALCL reveal preclinical promise for therapy with brigatinib

. 2023 Sep;202(5):985-994. doi: 10.1111/bjh.18953. Epub 2023 Jun 25. Nina Prokoph  1 , Jamie D Matthews  1 , Ricky M Trigg  1 , Ivonne A Montes-Mojarro  2 , G A Amos Burke  3 , Falko Fend  2 , Olaf Merkel  4 , Lukas Kenner  4   5   6   7 , Birgit Geoerger  8   9 , Robert…

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Development of mitochondrial gene-editing strategies and their potential applications in mitochondrial hereditary diseases: a review

Review . 2023 Nov 6:S1465-3249(23)01076-9. doi: 10.1016/j.jcyt.2023.10.004. Online ahead of print. Affiliations Expand Affiliations 1 Institute for Translational Medicine, The Affiliated Hospital of Qingdao University, College of Medicine, Qingdao University, Qingdao, China. 2 The Affiliated Cardiovascular Hospital of Qingdao University, Qingdao University, Qingdao, China. 3 Institute for Translational Medicine, The…

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Nutritional stress compromises mosquito fitness and antiviral immunity, while enhancing dengue virus infection susceptibility

McGraw, J. B. & Caswell, H. Estimation of individual fitness from life-history data. Am. Naturalist 147, 47–64 (1996). Article  Google Scholar  Price, T. & Schluter, D. On the low heritability of life‐history traits. Evolution 45, 853–861 (1991). Article  PubMed  Google Scholar  Nylin, S. & Gotthard, K. Plasticity in life-history traits….

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Temperate species underfill their tropical thermal potentials on land

Pecl, G. T. et al. Biodiversity redistribution under climate change: impacts on ecosystems and human well-being. Science 355, eaai9214 (2017). Article  PubMed  Google Scholar  Chen, I. C., Hill, J. K., Ohlemüller, R., Roy, D. B. & Thomas, C. D. Rapid range shifts of species associated with high levels of climate…

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The ongoing risk of Leishmania donovani transmission in eastern Nepal: an entomological investigation during the elimination era | Parasites & Vectors

World Health Organization. Leishmaniasis; 2023. www.who.int/news-room/fact-sheets/detail/leishmaniasis. Ruiz-Postigo JA, Jain S, Mikhailov A, Maia-Elkhoury AN, Valadas S, Warusavithana S, et al. Global leishmaniasis surveillance: 2019–2020, a baseline for the 2030 roadmap. Weekly epidemiological record. WHO; 2021. 3 September Report No.: 35. World Health Organization. Accelerating work to overcome the global impact…

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Molecular diagnosis, phylogenetic analysis, and antifungal susceptibility profiles of Candida species isolated from neutropenic oncological patients | BMC Infectious Diseases

Eissa S, Khedr R, Romeih M, Halaby L, Elanany M, Madney Y. Clinical characteristics and outcome of invasive fungal sinusitis in children with hematological malignancies. Med Mycol. 2022;60(4):myac010. Article  PubMed  Google Scholar  Lin G-L, Chang H-H, Lu C-Y, Chen C-M, Lu M-Y, Lee P-I, Jou S-T, Yang Y-L, Huang L-M,…

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Phage therapy minimally affects the water microbiota in an Atlantic salmon (Salmo salar) rearing system while still preventing infection

Shreiner, A. B., Kao, J. Y. & Young, V. B. The gut microbiome in health and in disease. Curr. Opin. Gastroenterol. 31, 69–75. doi.org/10.1097/Mog.0000000000000139 (2015). Article  CAS  PubMed  PubMed Central  Google Scholar  Selber-Hnatiw, S. et al. Human gut microbiota: Toward an ecology of disease. Front. Microbiol. 8, 1265. doi.org/10.3389/fmicb.2017.017E5 (2017)….

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CircRNA circ_0013339 Regulates the Progression of Colorectal Cancer Through miR-136-5p/SOX9 Axis

doi: 10.1007/s10528-023-10540-4. Online ahead of print. Affiliations Expand Affiliations 1 Department of Gastrointestinal Surgery, The Third Affiliated Hospital of Anhui Medical University (The First People’s Hospital of Hefei), Hefei, 230000, Anhui, China. ztcx9pc@163.com. 2 Department of Gastroenterology, The Second People’s Hospital of Hefei, Hefei Hospital Affiliated to Anhui Medical University,…

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Characterization of the genomic alterations in poorly differentiated thyroid cancer

Cancer Genome Atlas Research, N. Integrated genomic characterization of papillary thyroid carcinoma. Cell 159, 676–690. doi.org/10.1016/j.cell.2014.09.050 (2014). Sherman, S. I. Thyroid carcinoma. Lancet 361, 501–511. doi.org/10.1016/s0140-6736(03)12488-9 (2003). Article  PubMed  Google Scholar  Tong, J. et al. Poorly differentiated thyroid carcinoma: a clinician’s perspective. Eur. Thyroid J. 11, doi.org/10.1530/ETJ-22-0021 (2022). Asioli, S….

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Advancements in Rift Valley fever vaccines: a historical overview and prospects for next generation candidates

Gerken, K. N. et al. Paving the way for human vaccination against Rift Valley fever virus: a systematic literature review of RVFV epidemiology from 1999 to 2021. PLoS Negl. Trop. Dis. 16, e0009852 (2022). Article  CAS  PubMed  PubMed Central  Google Scholar  Pepin, M., Bouloy, M., Bird, B. H., Kemp, A….

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Next generation sequencing uncovers multiple miRNAs associated molecular targets in gallbladder cancer patients

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Detection and characterization of putative hypervirulent Klebsiella pneumoniae isolates in microbiological diagnostics

Navon-Venezia, S., Kondratyeva, K. & Carattoli, A. Klebsiella pneumoniae: A major worldwide source and shuttle for antibiotic resistance. FEMS Microbiol. Rev. 41(3), 252–275 (2017). Article  CAS  PubMed  Google Scholar  Marr, C. M. & Russo, T. A. Hypervirulent Klebsiella pneumoniae: A new public health threat. Expert Rev. Anti Infect. Ther. 17(2),…

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Non-coding RNA-mediated endothelial-to-mesenchymal transition in human diabetic cardiomyopathy, potential regulation by DNA methylation | Cardiovascular Diabetology

Raghavan S, Vassy JL, Ho Y, Song RJ, Gagnon DR, Cho K, et al. Diabetes mellitus-related all-cause and cardiovascular mortality in a national cohort of adults. J Am Heart Assoc. 2019;8(4): e011295. Article  PubMed  PubMed Central  Google Scholar  Jia G, Whaley-Connell A, Sowers JR. Diabetic cardiomyopathy: a hyperglycaemia—and insulin-resistance-induced heart…

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Repeated loss of the ability of a wild pepper disease resistance gene to function at high temperatures suggests that thermoresistance is a costly trait

doi: 10.1111/nph.19371. Online ahead of print. Affiliations Expand Affiliations 1 Centro de Biotecnología y Genómica de Plantas (CBGP), Universidad Politécnica de Madrid (UPM) and Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA/CSIC) and E.T.S.I. Agronómica, Alimentaria y de Biosistemas, Campus de Montegancedo, UPM, 28223, Pozuelo de Alarcón, Madrid,…

Continue Reading Repeated loss of the ability of a wild pepper disease resistance gene to function at high temperatures suggests that thermoresistance is a costly trait