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Tag: PubMed
Harnessing the Electrochemical Effects of Electroporation-Based Therapies to Enhance Anti-tumor Immune Responses
Aycock, K. N., and R. V. Davalos. Irreversible electroporation: background, theory, and review of recent developments in clinical oncology. bioelectricity. 1:214–234, 2019. Article PubMed PubMed Central Google Scholar Balogh, J., D. Victor, E. H. Asham, S. G. Burroughs, M. Boktour, A. Saharia, Li, R. M. Ghobrial, and H. P. Monsour….
Taxonomic and environmental distribution of bacterial amino acid auxotrophies
Tripp, H. J. et al. SAR11 marine bacteria require exogenous reduced sulphur for growth. Nature 452, 741–744 (2008). Article ADS CAS PubMed Google Scholar Yu, X. J., Walker, D. H., Liu, Y. & Zhang, L. Amino acid biosynthesis deficiency in bacteria associated with human and animal hosts. Infect. Genet. Evol….
Detection of a novel Babesia sp. in Amblyomma javanense, an ectoparasite of Sunda pangolins | Parasites & Vectors
Yabsley MJ, Shock BC. Natural history of zoonotic Babesia: role of wildlife reservoirs. Int J Parasitol Parasit Wildl. 2013;2:18–31. Article Google Scholar Hersh MH, Tibbetts M, Strauss M, Ostfeld RS, Keesing F. Reservoir competence of wildlife host species for Babesia microti. Emerg Infect Dis. 2012;18:1951–7. Article PubMed PubMed Central Google…
Molecular epidemiology and characteristics of respiratory syncytial virus among hospitalized children in Guangzhou, China | Virology Journal
Falsey AR, Walsh EE. Respiratory syncytial virus infection in adults. Clin Microbiol Rev. 2000;13(3):371–84. Article CAS PubMed PubMed Central Google Scholar Walker CLF, Rudan I, Liu L, Nair H, Theodoratou E, Bhutta ZA, O’Brien KL, Campbell H, Black RE. Global burden of childhood pneumonia and diarrhoea. Lancet (London, England). 2013;381(9875):1405–16….
Improving Species Level-taxonomic Assignment from 16S rRNA Sequencing Technologies
Affiliations Expand Affiliations 1 Oncology Data Analytics Program (ODAP), Catalan Institute of Oncology (ICO), L’Hospitalet del Llobregat, Barcelona, Catalonia, Spain. 2 ONCOBELL Program, Bellvitge Biomedical Research Institute (IDIBELL), L’Hospitalet de Llobregat, Barcelona, Catalonia, Spain. 3 Department of Clinical Sciences, Faculty of Medicine and Health Sciences and Universitat de Barcelona Institute…
Association between mitochondrial DNA levels and depression: a systematic review and meta-analysis | BMC Psychiatry
Tartt AN, Mariani MB, Hen R, Mann JJ, Boldrini M. Dysregulation of adult hippocampal neuroplasticity in major depression: pathogenesis and therapeutic implications. Mol Psychiatry. 2022;27(6):2689–99. doi.org/10.1038/s41380-022-01520-y Article CAS PubMed PubMed Central Google Scholar Friedrich MJ. Depression is the leading cause of disability around the World. JAMA. 2017;317(15):1517. doi.org/10.1001/jama.2017.3826 Article PubMed …
Weaponized genomics: potential threats to international and human security
Lentzos, F. (ed.) Biological threats in the 21st century: The politics, people, science and historical roots (Imperial College Press, 2016). Kania, E. B. Minds at War: China’s pursuit of military dominance through the cognitive sciences and biotechnology. PRISM 8, 82–101 (2019). Google Scholar Lentzos, F. Personalized war: How the genomics…
A DNA barcode library for woody plants in tropical and subtropical China
Hebert, P. D. N., Cywinska, A., Ball, S. L. & deWaard, J. R. Biological identifications through DNA barcodes. Proc Biol Sci 270, 313–321 (2003). Article CAS PubMed PubMed Central Google Scholar Huang, X., Ci, X., Conran, J. G. & Li, J. Application of DNA barcodes in Asian tropical trees –…
Taxonomic identification and temperature stress tolerance mechanisms of Aequorivita marisscotiae sp. nov
Zain ul Arifeen, M., Ma, Y.-N., Xue, Y.-R. & Liu, C.-H. Deep-sea fungi could be the new arsenal for bioactive molecules. Mar. Drugs 18, 9 (2020). Article Google Scholar Martínez-Espinosa, R. M. Microorganisms and their metabolic capabilities in the context of the biogeochemical nitrogen cycle at extreme environments. Int. J….
Unraveling the mitochondrial phylogenetic landscape of Thailand reveals complex admixture and demographic dynamics
Higham, C. Early Mainland Southeast Asia (Antiquity (River Books Press Dist A C, 2014). Google Scholar O’Connell, J. F. et al. When did homo sapiens first reach Southeast Asia and Sahul?. Proc. Natl. Acad. Sci. U. S. A. 115, 8482–8490 (2018). Article ADS PubMed PubMed Central Google Scholar Freidline, S….
Functional convergence of genomic and transcriptomic architecture underlies schooling behaviour in a live-bearing fish
Krause, J. & Ruxton, G. D. Living in Groups (Oxford Univ. Press, 2002). Réale, D., Reader, S. M., Sol, D., McDougall, P. T. & Dingemanse, N. J. Integrating animal temperament within ecology and evolution. Biol. Rev. 82, 291–318 (2007). Article PubMed Google Scholar Gartland, L. A., Firth, J. A., Laskowski,…
EMDB < EMD-14025
Field: Choose…EMDB IDTitleAuthorORCIDEM methodCurrent statusDeposition dateRelease dateDeposition siteLast processing siteFitted modelsRaw dataResolutionResolution methodSoftwareLigand nameComplex nameDomain nameDrug nameGO term nameInterPro term nameChEBI term nameExternal reference Publication titlePublication yearJournalPublication author Sample typeSample nameOrganismOrganism (NCBI code)StrainOrganTissueCellOrganelleCellular LocationE.C. numberMolecular Weight methodMolecular Weight (Da)Recombinant ExpressionRecombinant organismRecombinant organism (NCBI code)Recombinant strainRecombinant expression cellRecombinant expression plasmidDNA/RNA classificationDNA/RNA…
CircRNA in ocular neovascular diseases: Fundamental mechanism and clinical potential
Review doi: 10.1016/j.phrs.2023.106946. Epub 2023 Oct 4. Affiliations Expand Affiliations 1 Department of Ophthalmology, 2nd Hospital of Jilin University, Changchun 130041, Jilin, China. 2 Department of Ophthalmology, 2nd Hospital of Jilin University, Changchun 130041, Jilin, China; Department of Ophthalmology, Shanghai General Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai…
An ultrasensitive Cd2+ detection biosensor based on DNAzyme and CRISPR/Cas12a coupled with hybridization chain reaction
. 2023 Dec 1:1283:341950. doi: 10.1016/j.aca.2023.341950. Epub 2023 Oct 23. Affiliations Expand Affiliations 1 Co-Innovation Center for Sustainable Forestry in Southern China, Key Laboratory of State Forestry and Grassland Administration on Subtropical Forest Biodiversity Conservation, College of Life Sciences, Nanjing Forestry University, Nanjing, 210037, China. 2 Jiangsu Key Laboratory for…
Integration of xeno-free single-cell cloning in CRISPR-mediated DNA editing of human iPSCs improves homogeneity and methodological efficiency of cellular disease modeling
. 2023 Nov 8:S2213-6711(23)00415-0. doi: 10.1016/j.stemcr.2023.10.013. Online ahead of print. Affiliations Expand Affiliations 1 Turner Institute for Brain and Mental Health, School of Psychological Sciences, Monash University, Melbourne, VIC, Australia. 2 Department of Anatomy & Developmental Biology, Monash University, Melbourne, VIC 3800, Australia; Development and Stem Cells Program, Monash Biomedicine…
EMDB < EMD-16930
Field: Choose…EMDB IDTitleAuthorORCIDEM methodCurrent statusDeposition dateRelease dateDeposition siteLast processing siteFitted modelsRaw dataResolutionResolution methodSoftwareLigand nameComplex nameDomain nameDrug nameGO term nameInterPro term nameChEBI term nameExternal reference Publication titlePublication yearJournalPublication author Sample typeSample nameOrganismOrganism (NCBI code)StrainOrganTissueCellOrganelleCellular LocationE.C. numberMolecular Weight methodMolecular Weight (Da)Recombinant ExpressionRecombinant organismRecombinant organism (NCBI code)Recombinant strainRecombinant expression cellRecombinant expression plasmidDNA/RNA classificationDNA/RNA…
Molecular detection and whole genome sequencing of Pectobacterium and Dickeya, the casual agents of soft rot disease in lettuce
Azadmanesh S, Marefat A (2013) and Kayhan Azadmanesh. Detection of Pectobacteria causal agents of potato soft rot in north-western provinces of Iran. J Plant Pathol Microbiol 4(1) Babadoost M (1990) Bacterial soft rot of vegetables, fruits and ornamentals. Rep Plant Dis 943:7 Google Scholar Ben Fekih I, Zhang C, Li…
Single-cell RNAseq analysis of spinal locomotor circuitry in larval zebrafish
. 2023 Nov 17:12:RP89338. doi: 10.7554/eLife.89338. Affiliations Expand Affiliation 1 Vollum Institute, Oregon Health & Science University, Portland, United States. Item in Clipboard Jimmy J Kelly et al. Elife. 2023. Show details Display options Display options Format AbstractPubMedPMID . 2023 Nov 17:12:RP89338. doi: 10.7554/eLife.89338. Affiliation 1 Vollum Institute, Oregon Health &…
A smooth tubercle bacillus from Ethiopia phylogenetically close to the Mycobacterium tuberculosis complex
Houben, R. M. G. J. & Dodd, P. J. The global burden of latent tuberculosis infection: a re-estimation using mathematical modeling. PLoS Med. 13, e1002152 (2016). Article PubMed PubMed Central Google Scholar Cohen, A., Mathiasen, V. D., Schön, T. & Wejse, C. The global prevalence of latent tuberculosis: a systematic…
Investigation of antimicrobial susceptibility and genetic diversity among Staphylococcus pseudintermedius isolated from dogs in Rio de Janeiro
Devriese, L. A. et al. Staphylococcus pseudintermedius sp. nov., a coagulase-positive species from animals. Int. J. Syst. Evol. Microbiol. 1569–1573. doi.org/10.1099/ijs.0.63413-0 (2005). Gharsa, H. et al. Antimicrobial resistance, virulence genes, and genetic lineages of Staphylococcus pseudintermedius in healthy dogs in Tunisia. Microb. Ecol. 66, 363–368 (2013). Article CAS PubMed Google…
Simultaneous analysis of seven 16S rRNA hypervariable gene regions increases efficiency in marine bacterial diversity detection
doi: 10.1111/1462-2920.16530. Online ahead of print. Affiliations Expand Affiliations 1 Ecology Group, Rheinland-Pfälzische Technische Universität Kaiserslautern-Landau, Kaiserslautern, Germany. 2 Marine Ecosystems Functioning, AZTI, Marine Research, Basque Research and Technology Alliance, Pasia, Gipuzkoa, Spain. 3 Molecular Ecology Group, Rheinland-Pfälzische Technische Universität Kaiserslautern-Landau, Kaiserslautern, Germany. 4 SeqIT, Laboratory for Molecular Diagnostics and…
Quantitative analysis of mitochondrial DNA in porcine-mouse cloned embryos
. 2023 Jul;65(4):767-778. doi: 10.5187/jast.2023.e2. Epub 2023 Jul 30. Affiliations Expand Affiliation 1 Division of Animal & Dairy Science, Chungnam National University, Daejeon 34134, Korea. Item in Clipboard Hyeonyeong Shin et al. J Anim Sci Technol. 2023 Jul. Show details Display options Display options Format AbstractPubMedPMID . 2023 Jul;65(4):767-778. doi: 10.5187/jast.2023.e2….
Gotta Get Rid of It All: Total Plaque Clearance Key for Clinical Benefit
18 Nov 2023 As researchers parse what makes amyloid immunotherapy work, one answer keeps bubbling up: Take out all plaque quickly, so that clinical benefits have time to show up. At last month’s Clinical Trials on Alzheimer’s Disease conference, held October 24 to 27 in Boston and online, several talks…
Prediction of CHO cell line stability using expression of DNA repair genes
doi: 10.1002/biot.202300425. Online ahead of print. Affiliations Expand Affiliations 1 Department of Chemical and Biomolecular Engineering, University of Delaware, Newark, Delaware, USA. 2 National Institute for Innovation in Manufacturing Biopharmaceuticals, Newark, Delaware, USA. 3 Pfizer, Inc, 875 Chesterfield Pkwy W, Chesterfield, Missouri, USA. Item in Clipboard Lauren T Cordova et al….
Shotgun metagenomes from productive lakes in an urban region of Sweden
Williamson, C. E., Saros, J. E., Vincent, W. F. & Smol, J. P. Lakes and reservoirs as sentinels, integrators, and regulators of climate change. Limnology and Oceanography 54, 2273–2282, doi.org/10.4319/lo.2009.54.6_part_2.2273 (2009). Article ADS Google Scholar Cavicchioli, R. et al. 2019. Scientists’ warning to humanity: microorganisms and climate change. Nature Reviews…
The analysis of the genotype of Sapovirus outbreaks in Zhejiang Province | Virology Journal
Leblanc D, Inglis GD, Boras VF, Brassard J, Houde A. The prevalence of enteric RNA viruses in stools from diarrheic and non-diarrheic people in southwestern Alberta, Canada. Arch Virol. 2017;162(1):117–28. Article CAS PubMed Google Scholar Becker-Dreps S, González F, Bucardo F. Sapovirus: an emerging cause of childhood diarrhea. Curr Opin…
Infant microbiome cultivation and metagenomic analysis reveal Bifidobacterium 2’-fucosyllactose utilization can be facilitated by coexisting species
Stewart, C. J. et al. Temporal development of the gut microbiome in early childhood from the TEDDY study. Nature 562, 583–588 (2018). Article CAS ADS PubMed PubMed Central Google Scholar Tamburini, S., Shen, N., Wu, H. C. & Clemente, J. C. The microbiome in early life: implications for health outcomes….
CRISPR/Cas12a trans-cleavage triggered by cleavage ligation of dumbbell DNA for specific detection of human 8-oxoguanine DNA glycosylase activity
Poetsch AR (2020) The genomics of oxidative DNA damage, repair, and resulting mutagenesis. Comput Struct Biotechnol J 18:207–219. doi.org/10.1016/j.csbj.2019.12.013 Article CAS PubMed PubMed Central Google Scholar Ba X, Aguilera-Aguirre L, Rashid QT, Bacsi A, Radak Z, Sur S, Hosoki K, Hegde ML, Boldogh I (2014) The role of 8-oxoguanine DNA…
Multiple micronutrient deficiencies in early life cause multi-kingdom alterations in the gut microbiome and intrinsic antibiotic resistance genes in mice
Han, X., Ding, S., Lu, J. & Li, Y. Global, regional, and national burdens of common micronutrient deficiencies from 1990 to 2019: a secondary trend analysis based on the Global Burden of Disease 2019 study. eClinicalMedicine 44, 101299 (2022). Article PubMed PubMed Central Google Scholar Bailey, R. L., West, K….
Bacterial genome size and gene functional diversity negatively correlate with taxonomic diversity along a pH gradient
Fierer, N. & Jackson, R. B. The diversity and biogeography of soil bacterial communities. Proc. Natl. Acad. Sci. USA. 103, 626–631 (2006). Article ADS CAS PubMed PubMed Central Google Scholar Gao, C. & Guo, L. Progress on microbial species diversity, community assembly and functional traits. Biodivers. Sci. 30, 22429 (2022)….
The Bread Wheat Reference Genome Sequence
Adams MD, Celnicke SE, Holt RA, Evans CA et al (2000) The genome sequence of Drosophila melanogaster. Science 287:2185–2195. doi.org/10.1126/science.287.5461.2185 CrossRef PubMed Google Scholar Alonge M, Shumata A, Pulu D, Zimin AV, Salzberg SL (2020) Chromosome-scale assembly of the bread wheat genome reveals thousands of additional gene copies. Genetics 216:599–608….
Wheat Sequencing: The Pan-Genome and Opportunities for Accelerating Breeding
Abberton M, Batley J, Bentley A, Bryant J, Cai H, Cockram J, Costa de Oliveira A, Cseke LJ, Dempewolf H, De Pace C, Edwards D, Gepts P, Greenland A, Hall AE, Henry R, Hori K, Howe GT, Hughes S, Humphreys M, Lightfoot D, Marshall A, Mayes S, Nguyen HT, Ogbonnaya…
Exploring the interplay between PARP1 and circRNA biogenesis and function
Review Wiley Interdiscip Rev RNA . 2023 Nov 13:e1823. doi: 10.1002/wrna.1823. Online ahead of print. Affiliations Expand Affiliations 1 Department of Molecular and Cellular Biochemistry, University of Kentucky, Lexington, Kentucky, USA. 2 Department of Epigenetics, Van Andel Research Institute, Grand Rapids, Michigan, USA. Item in Clipboard Review Hejer Dhahri et al….
T-Cell Engaging Antibodies in Diffuse Large B Cell Lymphoma-An Update
Review . 2023 Oct 25;12(21):6737. doi: 10.3390/jcm12216737. Affiliations Expand Affiliations 1 Alfred Health, Melbourne, VIC 3004, Australia. 2 St. Vincent’s Hospital, Melbourne, Fitzroy, VIC 3065, Australia. Item in Clipboard Review Shalini Balendran et al. J Clin Med. 2023. Show details Display options Display options Format AbstractPubMedPMID . 2023 Oct 25;12(21):6737. doi:…
Clinically relevant antibiotic resistance genes are linked to a limited set of taxa within gut microbiome worldwide
Murray, C. J. et al. Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis. Lancet 399, 629–655 (2022). Article CAS Google Scholar Brito, I. L. et al. Mobile genes in the human microbiome are structured from global to individual scales. Nature 535, 435–439 (2016). Article ADS CAS PubMed …
Oncogenic activation revealed by FGFR2 genetic alterations in intrahepatic cholangiocarcinomas | Cell & Bioscience
Everhart JE, Ruhl CE. Burden of digestive diseases in the United States Part III: Liver, biliary tract, and pancreas. Gastroenterology. 2009;136(4):1134–44. Article PubMed Google Scholar Khan SA, Thomas HC, Davidson BR, Taylor-Robinson SD. Cholangiocarcinoma. Lancet. 2005;366(9493):1303–14. Article PubMed Google Scholar Nakanuma Y, Klimstra DS, Komuta M, Zen Y (2019) Intrahepatic…
Genetic manipulation of giant viruses and their host, Acanthamoeba castellanii
Rayamajhee, B., Willcox, M. D., Henriquez, F. L., Petsoglou, C. & Carnt, N. Acanthamoeba keratitis: an increasingly common infectious disease of the cornea. Lancet Microbe 2, e345–e346 (2021). PubMed Google Scholar Guimaraes, A. J., Gomes, K. X., Cortines, J. R., Peralta, J. M. & Peralta, R. H. Acanthamoeba spp. as…
Bacteria can maintain rRNA operons solely on plasmids for hundreds of millions of years
Egan, E. S., Fogel, M. A. & Waldor, M. K. Divided genomes: negotiating the cell cycle in prokaryotes with multiple chromosomes. Mol. Microbiol. 56, 1129–1138 (2005). Article CAS PubMed Google Scholar Harrison, P. W., Lower, R. P., Kim, N. K. & Young, J. P. Introducing the bacterial ‘chromid’: not a…
Establishment of a prognostic signature based on fatty acid metabolism genes in HCC associated with hepatitis B | BMC Gastroenterology
Sung H, Ferlay J, Siegel RL, Laversanne M, Soerjomataram I, Jemal A, et al. Global Cancer statistics 2020: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA Cancer J Clin. 2021;71:209–49. Article PubMed Google Scholar Chen W, Zheng R, Baade PD, Zhang S, Zeng H,…
PMID multiple pdfs download using R
Hello everyone, I have done a mesh search in pubmed for some certain keywords, I have got PMIDs for the result, Now I want to download all pdfs using those PMIDs in R. I have used this R script install.packages(c(“rentrez”, “rcrossref”, “xml2”)) library(rentrez) library(rcrossref) library(xml2) get_doi <- function(pmid) { query…
Detection of cellular traction forces via the force-triggered Cas12a-mediated catalytic cleavage of a fluorogenic reporter strand
Orr, A. W., Helmke, B. P., Blackman, B. R. & Schwartz, M. A. Mechanisms of mechanotransduction. Dev. Cell 10, 11–20 (2006). Article CAS PubMed Google Scholar Zhang, Y. et al. Platelet integrins exhibit anisotropic mechanosensing and harness piconewton forces to mediate platelet aggregation. Proc. Natl Acad. Sci. USA 115, 325–330…
Robust airway microbiome signatures in acute respiratory failure and hospital-acquired pneumonia
He, Q. et al. The epidemiology and clinical outcomes of ventilator-associated events among 20,769 mechanically ventilated patients at intensive care units: an observational study. Crit. Care 25, 44 (2021). Article PubMed PubMed Central Google Scholar Bellani, G. et al. Epidemiology, patterns of care, and mortality for patients with acute respiratory…
The Imageable Genome | Nature Communications
For the Imageable Genome project, we developed a data pipeline that identifies texts containing radiotracers, recognizes and extracts names of radiotracers from texts, filters for clinically relevant radiotracers and their associated targets, and translates protein names, i.e. of radiotracer targets, to names of the coding genes. We then downloaded the…
Erythroderma combined with deeper dermal dermatophytosis due to Trichophyton rubrum in a patient with myasthenia gravis: first case report and literature review | BMC Infectious Diseases
de Hoog GS, Dukik K, Monod M, Packeu A, Stubbe D, Hendrickx M, et al. Toward a novel multilocus phylogenetic taxonomy for the dermatophytes. Mycopathologia. 2017;182(1–2):5–31. Article PubMed Google Scholar Segal E, Elad D. Human and zoonotic dermatophytoses: epidemiological aspects. Front Microbiol. 2021;12:713532. Article PubMed PubMed Central Google Scholar Burstein…
A paradox of choice: Sequencing therapy in relapsed/refractory diffuse large B-cell lymphoma
Review doi: 10.1016/j.blre.2023.101140. Online ahead of print. Affiliations Expand Affiliations 1 Department of Hematology and Oncology, Cleveland Clinic Taussig Cancer Center, Cleveland, OH, United States of America. 2 Department of Hematology and Oncology, Cleveland Clinic Taussig Cancer Center, Cleveland, OH, United States of America; Case Comprehensive Cancer Center, Cleveland, OH,…
Disproportionate role of nuclear-encoded proteins in organismal and mitochondrial thermal performance in a copepod
. 2023 Nov 10:jeb.246085. doi: 10.1242/jeb.246085. Online ahead of print. Affiliations Expand Affiliation 1 Department of Integrative Biology, Oregon State University, Corvallis, OR 97331, USA. Item in Clipboard Kamron L Kayhani et al. J Exp Biol. 2023. Show details Display options Display options Format AbstractPubMedPMID . 2023 Nov 10:jeb.246085. doi: 10.1242/jeb.246085….
Retracted: Integrated Analysis of Circular RNA-Associated ceRNA Network Reveals Potential circRNA Biomarkers in Human Breast Cancer
Retraction of Publication . 2023 Nov 1:2023:9780596. doi: 10.1155/2023/9780596. eCollection 2023. Item in Clipboard Retraction of Publication Computational And Mathematical Methods In Medicine. Comput Math Methods Med. 2023. Show details Display options Display options Format AbstractPubMedPMID . 2023 Nov 1:2023:9780596. doi: 10.1155/2023/9780596. eCollection 2023. Item in Clipboard Cite Display options…
Addgene: pAAV-FLEX-SaCas9-U6-sgRNA Citations
Originally described in: Conditional Single Vector CRISPR/SaCas9 Viruses for Efficient Mutagenesis in the Adult Mouse Nervous System.Hunker AC, Soden ME, Krayushkina D, Heymann G, Awatramani R, Zweifel LS Cell Rep. 2020 Mar 24;30(12):4303-4316.e6. doi: 10.1016/j.celrep.2020.02.092. PubMed Journal Articles Citing pAAV-FLEX-SaCas9-U6-sgRNA Articles CRISPR/SaCas9 mutagenesis of stromal interaction molecule 1 in proopiomelanocortin…
[Molecular diagnostics for vitreoretinal lymphoma]
Review doi: 10.1007/s00292-023-01251-z. Online ahead of print. [Article in German] Irina Bonzheim 1 , Julia Salmerón-Villalobos 2 , Daniela Süsskind 3 , Peter Szurman 4 , Florian Gekeler 3 5 , Martin S Spitzer 6 , Itziar Salaverria 2 , Elias Campo 2 , Sarah E Coupland 7 , Leticia Quintanilla-Martinez 8 , Falko Fend 8 Affiliations Expand Affiliations…
Genomics of soil depth niche partitioning in the Thaumarchaeota family Gagatemarchaeaceae
Sheridan, P. O. et al. Gene duplication drives genome expansion in a major lineage of Thaumarchaeota. Nat. Commun. 11, 1–12 (2020). Article Google Scholar Sheridan, P. O., Meng, Y., Williams, T. A. & Gubry-Rangin, C. Recovery of Lutacidiplasmatales archaeal order genomes suggests convergent evolution in Thermoplasmatota. Nat. Commun. 13, 1–13…
What is CYP2D6 responsible for?
The CYP2D6 enzyme catalyses the metabolism of a large number of clinically important drugs including antidepressants, neuroleptics, some antiarrhythmics, lipophilic β-adrenoceptor blockers and opioids. Takedown request View complete answer on ncbi.nlm.nih.gov What is the role of the CYP2D6 enzyme? One such member, CYP2D6 is involved in the metabolism of a…
Two sympatric lineages of Australian Cnestus solidus share Ambrosiella symbionts but not Wolbachia
Andersen HF, Jordal BH, Kambestad M, Kirkendall LR (2012) Improbable but true: the invasive inbreeding ambrosia beetle Xylosandrus morigerus has generalist genotypes. Ecol Evol 2:247–257 Article PubMed PubMed Central Google Scholar Arif S, Gerth M, Hone‐Millard WG, Nunes MDS, Dapporto L, Shreeve TG (2021) Evidence for multiple colonisations and Wolbachia…
Transcriptomic analysis reveals that RasGEF1b deletion alters basal and LPS-induced expression of genes involved in chemotaxis and cytokine responses in macrophages
Rojas, J. M. & Santos, E. Ras-Gefs and Ras Gaps. In RAS Family GTPases Vol. 4 (Springer, 2006). Google Scholar Broek, D. et al. The S. cerevisiae CDC25 gene product regulates the RAS/adenylate cyclase pathway. Cell 48, 789–799 (1987). Article CAS PubMed Google Scholar van Dam, T. J. P., Rehmann,…
In silico prospecting of the mtDNA of Macrobrachium amazonicum from transcriptome data | BMC Genomics
Bentes B, Martinelli J, Souza L, Cavalcante D, Almeida M, Isaac V. Spatial distribution of the amazon river prawn Macrobrachium Amazonicum (Heller, 1862) (Decapoda, Caridea, Palaemonidae) in two perennial creeks of an estuary on the northern coast of Brazil (Guajará Bay, Belém, Pará). Brazilian J Biol. 2011;71:925–35. Article Google Scholar …
A tRNA-modifying enzyme facilitates RNase P activity in Arabidopsis nuclei
Chapeville, F. et al. On the role of soluble ribonucleic acid in coding for amino acids. Proc. Natl Acad. Sci. Usa. 48, 1086–1092 (1962). Article CAS PubMed PubMed Central Google Scholar Korostelev, A., Trakhanov, S., Laurberg, M. & Noller, H. F. Crystal structure of a 70S ribosome–tRNA complex reveals functional…
A software tool to adjust codeine dose based on CYP2D6 gene-pair polymorphisms and drug-drug interactions
Review doi: 10.1038/s41397-023-00318-7. Online ahead of print. Affiliations Expand Affiliations 1 Pharmaceutical Sciences Department, School of Pharmacy, Lebanese American University, Byblos, Lebanon. ysaab@lau.edu.lb. 2 Electrical and Computer Engineering Department, School of Engineering, Lebanese American University, Byblos, Lebanon. zahi.nakad@lau.edu.lb. Item in Clipboard Review Yolande Saab et al. Pharmacogenomics J. 2023. Show details…
Asymmetric distribution of parental H3K9me3 in S phase silences L1 elements
doi: 10.1038/s41586-023-06711-3. Online ahead of print. Zhiming Li # 1 2 3 4 , Shoufu Duan # 1 2 3 4 , Xu Hua 1 2 3 4 , Xiaowei Xu 1 2 3 4 , Yinglu Li 4 , Demis Menolfi 1 , Hui Zhou …
Real-time analysis of the cancer genome and fragmentome from plasma and urine cell-free DNA using nanopore sequencing
doi: 10.15252/emmm.202217282. Online ahead of print. Ymke van der Pol # 1 2 , Normastuti Adhini Tantyo # 1 2 , Nils Evander 1 2 , Anouk E Hentschel 1 3 , Birgit Mm Wever 1 2 , Jip Ramaker 1 2 , Sanne Bootsma 4 5 6 , Marieke F…
HDAC3 deacetylates H3K27ac and H3K9ac on the TrkC promoter to exacerbate sevoflurane-induced neurotoxicity
Apai C, Shah R, Tran K, Pandya Shah S (2021) Anesthesia and the developing brain: a review of sevoflurane-induced neurotoxicity in pediatric populations. Clin Ther 43:762–778 Article CAS PubMed Google Scholar Chai G et al (2022) Sevoflurane inhibits histone acetylation and contributes to cognitive dysfunction by enhancing the expression of…
Metagenome-assembled genomes from High Arctic glaciers highlight the vulnerability of glacier-associated microbiota and their activities to habitat loss
doi: 10.1099/mgen.0.001131. Affiliations Expand Affiliations 1 Department of Life Sciences (DLS), Aberystwyth University, Wales, UK. 2 Interdisciplinary Centre for Environmental Microbiology (iCEM), Aberystwyth University, Wales, UK. 3 Department of Geography and Earth Sciences (DGES), Aberystwyth University, Wales, UK. 4 Present address: Department of Pathobiology and Population Sciences, The Royal Veterinary…
Genome-wide meta-analysis, functional genomics and integrative analyses implicate new risk genes and therapeutic targets for anxiety disorders
Kessler, R. C. et al. Lifetime prevalence and age-of-onset distributions of DSM-IV disorders in the National Comorbidity Survey Replication. Arch. Gen. Psychiatry 62, 593–602 (2005). Article PubMed Google Scholar Kessler, R. C. et al. Prevalence, persistence, and sociodemographic correlates of DSM-IV disorders in the National Comorbidity Survey Replication Adolescent Supplement….
Genome interpretation in a federated learning context allows the multi-center exome-based risk prediction of Crohn’s disease patients
Goodwin, S., McPherson, J. D. & Richard McCombie, W. Coming of age: Ten years of next-generation sequencing technologies. Nat. Rev. Genet. 17(6), 333–351 (2016). Article CAS PubMed PubMed Central Google Scholar Van Dijk, E. L., Auger, H., Jaszczyszyn, Y. & Thermes, C. Ten years of next-generation sequencing technology. Trends Genet….
Shallow whole genome sequencing approach to detect Homologous Recombination Deficiency in the PAOLA-1/ENGOT-OV25 phase-III trial
Polak P, Kim J, Braunstein LZ, Karlic R, Haradhavala NJ, Tiao G, et al. A mutational signature reveals alterations underlying deficient homologous recombination repair in breast cancer. Nat Genet. 2017;49:1476–86. Article CAS PubMed PubMed Central Google Scholar Birkbak NJ, Wang ZC, Kim JY, Eklund AC, Li Q, Tian R, et…
Analysis of microbial composition and sharing in low-biomass human milk samples: a comparison of DNA isolation and sequencing techniques
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Divergent mechanisms of reduced growth performance in Betula ermanii saplings from high-altitude and low-latitude range edges
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Apoptotic stress causes mtDNA release during senescence and drives the SASP – ePrints
Apoptotic stress causes mtDNA release during senescence and drives the SASP Lookup NU author(s): Hanna Salmonowicz, Dr James ChapmanORCiD, George Kelly, Dr Laura Greaves, Professor Derek Mann, Dr Viktor Korolchuk Downloads Full text for this publication is not currently held within this repository….
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The correlation between gut microbiome and atrial fibrillation: pathophysiology and therapeutic perspectives | Military Medical Research
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Clarivate Content Editor Vacancy – Biotech, Biochem Apply
“Exciting Job Opening at Clarivate for Biotech Enthusiasts – Apply Now!” Clarivate Content Editor Vacancy – Biotech, Biochem, Bioinformatics Apply Associate Content Editor – GENESEQ Job Number: JREQ124259 City, ST: Chennai, TN About the Company Clarivate is a leading global provider of trusted insights and analytics to accelerate the pace…
Chromosome-level genomes of three key Allium crops and their trait evolution
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Development of mitochondrial gene-editing strategies and their potential applications in mitochondrial hereditary diseases: a review
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The ongoing risk of Leishmania donovani transmission in eastern Nepal: an entomological investigation during the elimination era | Parasites & Vectors
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Molecular diagnosis, phylogenetic analysis, and antifungal susceptibility profiles of Candida species isolated from neutropenic oncological patients | BMC Infectious Diseases
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CircRNA circ_0013339 Regulates the Progression of Colorectal Cancer Through miR-136-5p/SOX9 Axis
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Non-coding RNA-mediated endothelial-to-mesenchymal transition in human diabetic cardiomyopathy, potential regulation by DNA methylation | Cardiovascular Diabetology
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Repeated loss of the ability of a wild pepper disease resistance gene to function at high temperatures suggests that thermoresistance is a costly trait
doi: 10.1111/nph.19371. Online ahead of print. Affiliations Expand Affiliations 1 Centro de Biotecnología y Genómica de Plantas (CBGP), Universidad Politécnica de Madrid (UPM) and Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA/CSIC) and E.T.S.I. Agronómica, Alimentaria y de Biosistemas, Campus de Montegancedo, UPM, 28223, Pozuelo de Alarcón, Madrid,…