Tag: Pybedtools
Immune gene variation associated with chromosome-scale differences among individual zebrafish genomes
Litman, G. W., Cannon, J. P. & Dishaw, L. J. Reconstructing immune phylogeny: New perspectives. Nat. Rev. Immunol. 5, 866–879 (2005). Article CAS PubMed PubMed Central Google Scholar Criscitiello, M. F. & de Figueiredo, P. Fifty shades of immune defense. Heitman J, editor. PLoS Pathog. 9, e1003110 (2013). Article CAS …
Installing pybedtools in Windows 10
Installing pybedtools in Windows 10 1 I am trying to install pybedtools in Windows 10 Jupyter Notebook but it gives me following error: Do we able to install pybedtools in Windows 10? pybedtools • 86 views No, it is not possible to use pybedtools in native windows, as it relies…
Unable to install bioconda packages in conda environments
From your command line it appears you are on windows. There are several veresions of pybedtools on bioconda, however, if I grep through them, they are all for the linux platform. If you’re on Windows 10, you could consider setting up the ‘windows subsystem for linux’ (and possibly Xming), installing…
bedops bedmap operation in python
bedops bedmap operation in python 1 I noticed there is a conda version of bedops bedmap function available. I’ve been struggling to use it though. Could someone refer me to any documentation of it’s usage in a python script please. Have a great day. Thanks in advance. python bedops bedmap…
converting multiple bam files to bed
Bedtools – converting multiple bam files to bed 1 Hi all, I have previous experience in R, but since some months ago I am trying new things in Python (JupyterLab). I have a a directory with different files. Some of them are ‘.bam’ files. My objective is to obtain ‘.bed’…
Pybedtools error sans
Pybedtools error sans 20-08-2021 pysam – Error when I install samtools for python on windows – i trying install pysam, pybedtools modules on python got error: ($i=1; $i[email protected] temp]$ conda install pysam bedtools hisat2 [ snip. However,…
