Tag: python

Postdoc in data science, bioinformatics or computational biology in microbiome Novo Nordisk Foundation Center for Basic Metabolic Research

University of Copenhagen The University of Copenhagen is seeking up to two highly motivated and talented postdoctoral fellows to commence on March 1, 2023, or after agreement at the Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen. About UsThe Novo Nordisk Foundation Center for Basic Metabolic Research’s…

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Bioinformatics Software QA Engineer (Remote Option) at Genentech

The Position Genentech, a member of the Roche group and founder of the biotechnology industry, is dedicated to pursuing groundbreaking science to discover and develop medicines for people with serious and life-threatening diseases. To solve the world’s most complex health challenges, we ask bigger questions that challenge our industry and…

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Research Fellow, Bioinformatics job with NATIONAL UNIVERSITY OF SINGAPORE

Job Description We are seeking for a full-time bioinformatician in the cancer biology laboratory of Dr. Shruti Bhatt in the Department of Pharmacy at the National University of Singapore.  Check out Bhatt lab research focus, via this link:   pharmacy.nus.edu.sg/team/asst-prof-shruti-bhatt/ We are looking for candidates who share our excitement to…

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Bioinformatics Programmer II job with Baylor College of Medicine

Summary We are seeking a self-motivated, diligent, and result-oriented individual to join Dr. Bing Zhang’s Integrative Bioinformatics Laboratory (www.zhang-lab.org) as a Bioinformatics Programmer. The position rank is open (Bioinformatics Programmer I, II, or Senior Bioinformatics Programmer), depending on experience. Our research is funded by the National Cancer Institute (NCI), the…

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Post-doc in Computer Science / Bioinformatics – University of Bern – job portal

Post-doc in Computer Science / Bioinformatics We are seeking to hire a person with a PhD in bioinformatics, computational biology, data science, computer science, statistics or applied mathematics. Preferably the candidate should have experience of using large data sets to undertake projects with a particular focus on the integration of…

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Page Not Found – Jupyter Community Forum

Sign Up Log In Log In Popular Official Mastodon account(s)?Meta 403 Forbidden Error when using Azure AD for authenticationZero to JupyterHub on Kubernetes Install pip package such as backtrader in the jupyter/datascience-notebook imagediscuss error to download file in jupyterhub – failed – network errorJupyterHub [ANN] Jupyter Core 5.0Meta [ANN] New…

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scikit learn – Importing sklearn in Databricks downgrades the Python root logger?

Using Python 3.8.10 in an Azure Databricks notebook, runtime 10.4: >>> import logging >>> type(logging.root) logging.RootLogger Ok, that was expected. What’s surprising is this: >>> import sklearn # version is 1.1.3 >>> import logging >>> type(logging.root) numpy.distutils.log.Log This is problematic because numpy’s Log is not as powerful as Python’s; in…

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DashBio Alignment Chart/Sequence Viewer – Dash Python

Hello,I am using dash bio to view multiple sequences that are read from a Fasta file. Everything seems to work fine but I am wondering if there is a way to change the numbering that appears at the bottom of the sequence chart. The sequences I am reading follow a…

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Characterization, genome analysis and genetic tractability studies of a new nanocellulose producing Komagataeibacter intermedius isolate

Isolation, characterization and classification of BC-producing strain Isolation of single clones from CaCO3 halo zones in Glucose-Yeast Extract-Calcium carbonate agar and iterated subculturing in HS-Glu agar resulted in enrichment of an isolate with beige-coloured, smooth-edged and umbonate shaped colonies characteristics (Fig. S1A). The isolate is hereafter called ‘ENS15’. Under 100X magnification,…

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This Python Library ‘Imitation,’ Provides Open-Source Implementations of Imitation and Reward Learning Algorithms in PyTorch

In areas with clearly defined reward functions, like games, reinforcement learning (RL) has outperformed human performance. Unfortunately, it is difficult or impossible for many tasks in the real world to design the reward function procedurally. Instead, they must immediately absorb a reward function or policy from user feedback. Furthermore, even…

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Backpropagation Network using Python

Backpropagation neural network is used to improve the accuracy of neural network and make them capable of self-learning. Backpropagation means “backward propagation of errors”. Here error is spread into the reverse direction in order to achieve better performance. Backpropagation is an algorithm for supervised learning of artificial neural networks that…

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Bug#1024835: python-pauvre: ftbfs with biopython 1.80

Source: python-pauvre Version: 0.2.3-1 Severity: important Tags: ftbfs Dear Maintainer, python-pauvre fails its build time test suite when built against biopython 1.80 in experimental but builds successfully against biopython 1.79. The relevant part of the log in case of failure shows: I: pybuild base:240: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build; python3.10 -m unittest discover -v test_normal_plotting_scenario (pauvre.tests.test_synplot.libSeq_test_case) This…

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Principal Data Scientist (Bioinformatics and AI-driven Precision Medicine)

About the job Our Team: Artificial Intelligence (AI) and Machine Learning (ML) algorithms can significantly speed up drug discovery and shorten drug development and identification of patients for clinical trials thereby creating better medicines that save lives. AI and Deep Analytics (AIDA) is a critical group in Data and Data…

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Bioinformatics Analyst II – Epigenetics & 3D Genomics Job in Texas

Summary The lab of Dr. Kyle Eagen (www.eagenlab.org) at Baylor College of Medicine focuses on elucidating how DNA folds within cells and how DNA misfolding relates to human disease. Baylor College of Medicine, one of the top ranked medical schools in the country, is well known for its exceptional,…

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VIB hiring Postdoc Position in Bioinformatics, Metagenomics and the Human Microbiome in Leuven, Flemish Region, Belgium

The lab of Jeroen Raes (VIB, KU Leuven) is looking for a postdoctoral researcher in the computational analysis of microbiome data, with a particular emphasis on human-associated microbial communities in health and disease.Projects Will Focus On(i) bioinformatics/statistics method development for joint host and microbiota data analysis, multi-omics and clinical data…

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Bioinformatics Analyst Jobs

We have an exciting contract opportunity for a Bioinformatics analyst to support a collaboration between the Biologics Science and Technology group and Genomics Research Center, in which we are using genomics tools to optimize the development of better Chinese Hamster Ovary (CHO) cells for biologics manufacturing. The ideal candidate will…

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Bioinformatics Analyst II (Remote) Position In North Chicago, IL

Job Description To discuss more about this job opportunity, please reach out to Chitrank Rastogi (LinkedIn URL – www.linkedin.com/in/chitrank-rastogi-55119a102/), email your updated resume at chitrank.rastogi@collabera.com or give me a call at (425) 523-1648. Thank you! Job Description:Job Roles & Responsibilities: We have an exciting contract opportunity for a Bioinformatics analyst…

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Top Career opportunities in Bioinformatics in India | Top Jobs After a Bioinformatics Course

With the use of information technology, bioinformatics has added a new dimension to the study of biology and the analysis of biological data. More than 100 institutions and colleges in India provide bioinformatics degrees to meet the demand for bioinformaticians, increasing work prospects for bioinformatics professionals there.   In the…

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Bioinformatics Analyst-Entry Level Position In North Chicago, IL

Description du poste Bioinformatics Analyst Supports a collaboration between the Biologics Science and Technology group and Genomics Research Center, in which we are using genomics tools to optimize the development of better Chinese Hamster Ovary (CHO) cells for biologics manufacturing. The ideal candidate will have broad experience in genomics data…

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Research Fellow – Bioinformatics Program Job

Key Skills Java Programming, Python Programming, C++, C Programming, SQL, Cloud computing, Scala Programming, Machine learning techniques, Data science techniques, MATLAB Programming, PyTorch, TensorFlow, R Programming Job Description The Research shield at Mayo Clinic is committed to creating a diverse environment and recognizes that diverse research teams make better decisions,…

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Bioinformatics Analyst II Job in Maryland (MD), Research and Development Career, Full Time Jobs in Frederick National Laboratory for Cancer Research

Bioinformatics Analyst II Job ID: req3154Employee Type: exempt full-timeDivision: Applied & Development Research ProgramFacility: Frederick: Ft DetrickLocation: PO Box B, Frederick, MD 21702 USA The Frederick National Laboratory is a Federally Funded Research and Development Center (FFRDC) sponsored by the National Cancer Institute (NCI) and operated by Leidos Biomedical…

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Senior Research Scientist, Bioinformatician Cancer Science Institute job with NATIONAL UNIVERSITY OF SINGAPORE

Job Description A Senior Research Scientist position is available immediately in Prof Chng Wee Joo’s groups for a highly motivated PhD graduate with experience in Bioinformatics (computational genomics). The focus of the lab is on deciphering transcriptional and genomic abnormalities in the context of blood cancer, including epigenetic and superenhancer deregulation, using single…

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Research Investigator – Dr. Karras’s Lab (Bioinformatics & Genetics) job with University of Texas MD Anderson Cancer Center

The University of Texas MD Anderson Cancer Center in Houston is one of the world’s most respected centers focused on cancer patient care, research, education and prevention. It was named the nation’s No. 1 hospital for cancer care in U.S. News & World Report’s 2022 rankings. It is one of…

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Post-doctoral Fellow in the Department of Clinical Oncology job with THE UNIVERSITY OF HONG KONG

Work type: Full-time Department: Department of Clinical Oncology, School of Clinical Medicine (21600) Categories: Academic-related Staff Applications are invited for appointment as Post-doctoral Fellow in the Department of Clinical Oncology, School of Clinical Medicine (Ref.: 517408) (to commence as soon as possible for one to two years, with the possibility of renewal subject to satisfactory…

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Are package downgrades a necessary evil in Conda?

Are package downgrades a necessary evil in Conda? 1 I am just trying to get my head around using conda environments. I created a conda environment for a project containing plink2, plink, R and bcftools. When I installed plink, using mamba install -n autozygosity -c conda-forge plink, I got the…

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Part-Time Lecturer, Science Courses for Bioinformatics Graduate Programs job with Northeastern University

Part-Time Lecturer, Science Courses for Bioinformatics Graduate Programs About the Opportunity About the Opportunity Responsibilities include the following: review and learn key teaching points within existing instructor guides; be willing to support high-quality teaching and standards through preparation of lectures based on course materials provided; facilitate rich respectful debates and…

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Research Associate, Bioinformatics (Cancer Science Institute, NUS) job with NATIONAL UNIVERSITY OF SINGAPORE

Job Description A Bioinformatics position is available immediately at the Cancer Science Institute (a part of The National University of Singapore) in the laboratory of Dr. Sriram Sridharan. The research will focus in the broad area of replication stress, DNA damage and genome integrity.  This is an exciting opportunity to…

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Bioinformatics Scientist Job – Karkidi

Experience 2-4 year Salary $170,000-$180,000 Location San Francisco, CA, USA Job Function Bioinformatics Scientist Industry Information Technology Qualification Degree in Computer Science, PhD Degree, Degree in Bioinformatics, Degree in Computational Biology, Degree in Computational Science, Degree in Biomedical Engineering Key Skills Bioconductor, CRISPR technology, Data science techniques, Large data sets,…

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Postdoc position Infectious Disease Epidemiology

The lab of professor Moradigaravand at KAUST has an opening for one postdoctoral fellowship in Bioinformatics (postdoc.kaust.edu.sa), as part of the KAUST Smart Health Initiative, to investigate the genetic basis of key clinical features of bacterial infections. This position suits recent PhDs, MD/PhDs, with a career interest in computational biology,…

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Senior Associate Scientist, Bioinformatics at Pfizer in Pearl River, NY 10965

**Senior Associate Scientist, Bioinformatics -Viral Vaccines R&D** **Why Patients Need You** Pfizer’s purpose is to deliver breakthroughs that change patients’ lives. Research and Development is at the heart of fulfilling Pfizer’s purpose as we work to translate advanced science and technologies into the therapies and vaccines that matter most. Whether…

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Bioinformatics Analyst III Position In South San Francisco, CA

Job Description To discuss more about this job opportunity, please reach out to Chitrank Rastogi (LinkedIn URL – www.linkedin.com/in/chitrank-rastogi-55119a102/), email your updated resume at chitrank.rastogi@collabera.com or give me a call at (425) 523-1648. Thank you! Job Description:Job Roles & Responsibilities: The Genomic Research Center Computational Oncology group (GRC-CO) is seeking…

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Postdoctoral Scientist – Dr. Casero Lab – Bioinformatics

Principal Investigator, David Casero, PhD is looking for a Postdoctoral Scientist to join the team! The depth and breadth of the information generated by modern high-throughput technologies has promoted the integration of data-mining computational methods into everyday basic and clinical research. These so-called omics technologies can detect and quantify a…

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M/F Postdoc In Molecular Biology And Genomics

Description Organisation/Company: CNRS Research Field: Biological sciences › Biological engineering Chemistry › Biochemistry Physics › Biophysics Researcher Profile: First Stage Researcher (R1) Application Deadline: 01/12/2022 23:59 – Europe/Brussels Location: France › MONTPELLIER Type Of Contract: Temporary Job Status: Full-time Hours Per Week: 35 Offer Starting Date: 01/01/2023 – Genomics experiments:…

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Rsubread featureCounts outputs dozens of temp files, no counts

Rsubread featureCounts outputs dozens of temp files, no counts 1 @83165de1 Last seen 16 hours ago United States Hello, I am having trouble getting an output file in Rsubreads using featureCounts. I want to set up my data to run analysis of differential expresssion in EdgeR. I’m running about 40…

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No module named ‘upstream_ontologist.tests’ (and more)

Source: lintian-brush Version: 0.134 Severity: serious User: debian…@lists.debian.org Usertags: regression Dear maintainer(s), With a recent upload of lintian-brush the autopkgtest of lintian-brush fails in testing when that autopkgtest is run with the binary packages of lintian-brush from unstable. It passes when run with only packages from testing. In tabular form:…

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logits to softmax pytorch

A tag already exists with the provided branch name. Join the PyTorch developer community to contribute, learn, and get your questions answered. Space – falling faster than light? We are converting the layers using ReLu and other neural networks. Learn more, including about available controls: Cookies Policy. In addition, the…

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python – Scikit Learn _ufuncs error in Jupyter notebooks

Scikit learn has had _ufuncs errors for the past week and I can’t figure out why. I’m using python on anaconda and a Dell computer, while using Jupyter notebooks. It was previously fine until last week when I got these issues I’ve looked on other stack overflow questions and tried…

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python – eQTL data extraction from database JSON file

It’s a little hard to know what your goal is here based on the sample code, but I do find that your JSON snippet does not match any spec. I was able to edit it to add brackets to make the entries elements of a list: [ { “biosample_ontology”: {…

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Scikit-Learn Cheat Sheet (2022), Python for Data Science

The absolute basics for beginners learning Scikit-Learn in 2022 Photo from Unsplash by Tim Stief Scikit-learn is a free software machine learning library for the Python programming language. It features various classification, regression, clustering algorithms, and efficient tools for data mining and data analysis. It’s built on NumPy, SciPy, and Matplotlib. Sections:1….

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Kaggle Online Courses | Free Online Certification Courses

Kaggle is a platform for learners and competitors in data science and machine learning. Kaggle is maintained as a subsidiary of Google LLC. It was Headquartered in San Francisco, USA. It is famous for data science learning and competitions. It was started in April in the year 2010. Why free…

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Senior Bioinformatics Scientist at Invitae

Invitae is a biotechnology company focused on providing tools and services for clinical research applications of genomics. Our mission is to unlock the power of precision medicine in improving patient care by providing a technology platform to advance genomics and facilitate collaborative research. Invitae is seeking senior Bioinformaticians to join…

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python – Bayes PYMC3 estimate mean of each group

I have data from 6 shops for the same product. I need to estimate sales’ mean in each shop. Example of data: sales shop 0 2137 0 1 4324 2 2 34 0 3 4 1 I have to do it in 3 ways: simple Bayes model, Hierarchical model (1…

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python – having problem with multi-gpu in pytorch transformer

I am currently trying to make a translation model with Trnasformer model through PyTorch. Since I have 2 GPUs (2080ti x 2) available for training, I want to train the model through multi-gpu. Currently, the gpu is assigned to 0 and 1 respectively. The way I use multi-gpu is to…

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Install Sklearn With Code Examples

Install Sklearn With Code Examples In this article, we will see how to solve Install Sklearn with examples. pip install scikit-learn The solution to the previously mentioned problem, Install Sklearn, can also be found in a different method, which will be discussed further down with some illustrative code. conda update…

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Jupyter Sagemath Kernel With Code Examples

Jupyter Sagemath Kernel With Code Examples In this session, we are going to try to solve the Jupyter Sagemath Kernel puzzle by using the computer language. The code that follows serves as an illustration of this point. mkdir -p /usr/local/share/jupyter/kernels ln -nsf /opt/SageMath/local/share/jupyter/kernels/sagemath /usr/local/share/jupyter/kernels/sagemath The Jupyter Sagemath Kernel was solved…

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How to install Biopython in Python

Table of Contents # Install Biopython on Windows Install Biopython on macOS or Linux Install Biopython in Visual Studio Code Install Biopython in PyCharm Install Biopython in Anaconda Install Biopython in Jupyter Notebook Install biopython on Windows # To install the biopython module on Windows: Type CMD in the search…

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Bioinformatics Scientist, Statistical Inference #2568 at GRAIL

GRAIL is a healthcare company whose mission is to detect cancer early, when it can be cured. GRAIL is focused on alleviating the global burden of cancer by developing pioneering technology to detect and identify multiple deadly cancer types early. The company is using the power of next-generation sequencing, population-scale…

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Senior Clinical Bioinformatics Scientist – Medical Center, New York, United States

Senior Clinical Bioinformatics Scientist 525626 Medical Center Institute for Genomic Medicine Full Time Grade 104 Job Type: Officer of Administration Bargaining Unit: Regular/Temporary: Regular End Date if Temporary: Hours Per Week: 35 Salary Range:   Position Summary The Precision Genomics Laboratory (PGL), a partnership between the Department of Pathology and…

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python – DataSpell no “New Project” and other path related things messed up

In DataSpell, my New Project and Open Project buttons are replaced by New Workspace Directory and Attach Directory respectively. I want my buttons back! When I try to open any previous projects they now show an error, “Cannot attach project: Module already exists: stuff.iml” (although they open). All Jupyter servers…

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React & REST APIs: End-To-End TypeScript Based On OpenAPI Docs

When you work on a React & TypeScript project that fetches data from a REST API, keeping your data types in sync can be problematic. You obviously can create all the types on your frontend by hand. But this is a tedious and error-prone process. You might get a type…

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pytorch transforms resize

Example 1 torchvision.transforms.functional.resize(img: Tensor, size: List[int], interpolation: InterpolationMode = InterpolationMode.BILINEAR, max_size: Optional[int] = None, antialias: Optional[bool] = None) Tensor [source] Resize the input image to the given size. If the image is torch Tensor, it is expected to have [, H, W] shape, where . In order to script the…

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data analysis – How to unwrap coordinates produced by LAMMPS in python

Okay so I am using LAMMPS to produce wrapped coordinates since I am using periodic boundary conditions with their simulation, in a box of x=[0,91.24] by y=[0,91.24], and I was looking how I would be able to unwrap the coordinates so that I get correct coordinates to be able to…

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State of Data Science and Machine Learning: Kaggle 2022 Survey

In September, Kaggle released their annual survey for the state of data science and machine learning Here are some top level findings I found interesting  An increasing number of data scientists are living and working in India and Japan Python and SQL remain the two most common programming skills for…

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Syracuse University Online Employment Site | Post Doc

Job # 076742 Job Title Post Doc – Genomics and Bioinformatics Location Syracuse, NY Pay Range Commensurate with Experience FLSA Status Exempt Hours As determined by PI. Job Type Full-time Rank Post Doc Campus Syracuse, NY Unionized Position Code Not Applicable Job Description The Ahmed-Brimah Lab at Syracuse University invites…

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Bioinformatics Training Project Manager at European Molecular Biology Laboratory (EMBL)

About the team/job Are you passionate about computational training in life sciences and wish to focus your career on the management and coordination of training programs? We are looking for a team member who will coordinate a new multi-organization project (BioNT) funded by the European Commission, embedded in the Data…

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Postdoc position in circadian biology and bioinformatics

We are seeking a highly motivated and dynamic researcher with expertise in analysis and interpretation of high-throughput sequencing (transcriptomics, epigenomics etc.) and mass spectrometry (proteomics, metabolomics etc.) to work in the Zierath Group in collaboration with Barrès Group and Deshmukh Group. The position is a 3-year position to start March…

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Hummingbird Bioscience – Intern, Structural Bioinformatics

ABOUT THE ROLE Hummingbird Bioscience is seeking an Intern to help develop cutting edge methods for the analysis of protein and antibody structures utilizing machine learning and other structural bioinformatics methods. The successful candidate will have an interest and some background expertise in:  Programming and a basic understanding of bioinformatics…

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‘SeqRecord’ object has no attribute ‘transcribe’

‘SeqRecord’ object has no attribute ‘transcribe’ 1 I am learning how to use python and I need to get the RNA sequence from the DNA sequences of a Multi-Fasta file, but when I try to do it I get the same error. Here is my code: from Bio import SeqIO…

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Postdoctoral Fellow at European Molecular Biology Laboratory (EMBL)

About the team/job Cell plasticity is considered a key hallmark of metastatic cells and cancer therapy resistance by enabling cell adaptation to adverse conditions. Molecular and cellular mechanisms underlying cell plasticity are still poorly understood and a precise description of cell plasticity remains to reach consensus, mainly due to a…

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Ex Jupyter Notebook With Code Examples

Ex Jupyter Notebook With Code Examples This article will demonstrate via examples how to resolve the Ex Jupyter Notebook error . pip install voila As we have seen, a large number of examples were utilised in order to solve the Ex Jupyter Notebook problem that was present. What are the…

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Detecting de novo SNV with vcftools

Detecting de novo SNV with vcftools 1 Hi, all. I have a raw whole genome sequence data of a kind of fish trio: father, mother and offspring. I would like to know how many SNV loci there are in the child but not in the parent (i.e. de novo SNV…

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Researchers From UC Berkeley Develop NerfAcc, A PyTorch Nerf Acceleration Toolbox For Both Training And Inference

Neural Radiance Fields (NeRFs) is a revolutionary approach for 3D representation that uses a multi-layer perceptron to describe the geometry and view-dependent appearance of the scene (MLP). During the last two years, they have been solid in several downstream 3D applications, such as static/dynamic scene reconstruction, relighting, and content production….

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python – Correct way of merging scRNAseq datasets of healthy and tumor cell?

python – Correct way of merging scRNAseq datasets of healthy and tumor cell? – Bioinformatics Stack Exchange Stack Exchange Network Stack Exchange network consists of 182 Q&A communities including Stack Overflow, the largest, most trusted online community for developers to learn, share their knowledge, and build their careers. Visit Stack…

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why do some people don’t use scikit-learn library instead of writing long python functions?

Web: why do some people don’t use scikit-learn library instead of writing long python functions? from datascience Oct. 14, 2022, 7:19 a.m. | /u/Adventurous-Grab-20 Data Science reddit.com The other day i was exploring kaggle and i found most of them don’t use scikit-learn or any other library but instead they…

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Contrasting levels of hybridization across the two contact zones between two hedgehog species revealed by genome-wide SNP data

Ai H, Fang X, Yang B, Huang Z, Chen H, Mao L et al. (2015) Adaptation and possible ancient interspecies introgression in pigs identified by whole-genome sequencing. Nat Genet 47:217–225 CAS  PubMed  Article  Google Scholar  Alexander DH, Lange K (2011) Enhancements to the ADMIXTURE algorithm for individual ancestry estimation. BMC…

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python – Sagemath as daemon service – name ‘e’ is not defined”

I have been using Sagemath as a daemon service following the Python code presented here: ask.sagemath.org/question/23431/running-sage-from-other-languages-with-higher-performance/ That code sets up Sagemath as a daemon service using python sockets I make sockets calls via php sockets to connect with this sagemath daemon, and it works fine, except that it does not…

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Research Associate, Bioinformatics(Cancer Science Institute, NUS) job with NATIONAL UNIVERSITY OF SINGAPORE

Job Description A Bioinformatics position is available immediately at the Cancer Science Institute (a part of The National University of Singapore) in the laboratory of Dr. Sriram Sridharan. The research will focus in the broad area of replication stress, DNA damage and genome integrity.  This is an exciting opportunity to…

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Developing Innovative Bioinformatics Tools For The Analysis Of The Microbial Diversity In Extreme…

Description Organisation/Company: Università degli studi di Napoli Federico II Research Field: Biological sciences › Biology Researcher Profile: First Stage Researcher (R1) Recognised Researcher (R2) Established Researcher (R3) Leading Researcher (R4) Application Deadline: 28/10/2022 Location: Italy Type Of Contract: To be defined Eu Research Framework Programme: H2020 / ERC Developing and…

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Scientist, Discovery Bioinformatics Jobs in San Diego, CA

Scientist, Discovery Bioinformatics Jobs in San Diego, CA at Velia Title: Scientist, Discovery Bioinformatics Company: Velia Location: San Diego, CA Velia is a transformative biotech company with the ambitious goal to harness the therapeutic potential of a novel class of human peptides, also known as microproteins. Building upon our founders’…

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python – Pytorch, How to make a logistic regression model as a simple nn with a single layer

I have a training set with two parameters. That I want to classify into 4 categories. I want to use logistis regression model as a simple neutral network with a single layer, My model, class LogisticRegressionPytorch(nn.Module): def __init__(self, d, m): super(LogisticRegressionPytorch, self).__init__() self.linear = nn.Linear(d, m) def forward(self, x): outputs…

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Machine Learning – Stats Idea

Scikit currently is one of the most buzzed names among those who want to learn Python. It is the most effective library of machine learning. The best part about scikit is that the beginners can find it effective. Related course: Python Machine Learning Course Machine Learning with Python Introducing Scikit-learn…

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Senior Development Lead – Java OpenAPI RESTful API – Page Group Hong Kong

Leadership role:- You will be responsible for supporting the system design and conducting the development to deliver the business solution for the project according to the requirements and engineering standards. He/she will perform system analysis, application development, unit testing, trouble-shooting, and operations support work. Client Details We are an forward…

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New Best Practices — Visual Studio Magazine

The Data Science Lab Binary Classification Using PyTorch, Part 1: New Best Practices Because machine learning with deep neural techniques has advanced quickly, our resident data scientist updates binary classification techniques and best practices based on experience over the past two years. By James McCaffrey 10/05/2022 A binary…

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Research Scientist, Bioinformatician, Cancer Science Institute 1 job with NATIONAL UNIVERSITY OF SINGAPORE

JOB DESCRIPTION Analyze and integrate various NGS data Build and reproduce pipelines to process all types of DNA and RNA sequencing data Maintain all source code within Git and Dockerize all pipeline components Liaise with the Scaling Unit to convert pipelines into scalable workflows To…

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Strata Oncology hiring Senior/Principal Bioinformatics Scientist in United States

JOB TITLE: Senior/Principal Bioinformatics Scientist DEPARTMENT: Software Engineering/Bioinformatics REPORTS TO: Sr. Director of Bioinformatics LOCATION: Ann Arbor, MI, or Remote At Strata our mission is to accelerate the impact of precision medicine for patients with cancer. Job Summary We’re seeking an experienced data scientist to join our Bioinformatics team. We…

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Bioinformatics Workflow Developer job with Barrington James

Global biotechnology company focusing on molecular biology and applications, informatics, engineering, electronics, manufacturing and commercialisation. Their sequencing platform allows for rapid insights, that analyse DNA and RNA data. The Customer Analysis Workflows are responsible for communicating bioinformatic analyses to end users through various media from software libraries, notebook tutorials,…

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Bioinformatics Analyst job in Lexington, Kentucky at University of Kentucky

Posting Details Posting Details Job Title Bioinformatics Analyst Requisition Number RE35885 Working Title Department Name 7H025:CANCER CENTER-CORE SUPPORT Work Location Lexington, KY Grade Level 46 Salary Range $50,981-84,115/year Type of Position Staff Position Time Status Full-Time Required Education MS Click here for more information about equivalencies: www.uky.edu/hr/employment/working-uk/equivalencies Required Related Experience…

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Sr. Scientist, Bioinformatics | Pivot Bio

Company Half of our world’s food supply is dependent on synthetic nitrogen fertilizer, yet it has serious environmental impacts. Fertilizer contributes … View Company Profile Job Description About Pivot Bio:   Fueled by an innovative drive and a deep understanding of the soil microbiome, Pivot Bio is pioneering game-changing advances in…

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Rockefeller University Jobs – Bioinformatics Specialist in New York, New York, United States

Job: IRC28479 Description Job Title Bioinformatics Specialist Laboratory / Department Systems Cancer Biology Department Description Cancer remains a daunting problem despite decades of active research into its molecular causes. Such studies have predominantly focused on the earliest stages of cancer progression such as the formation of a cancer or genes…

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python – scikit-learn RandomizedSearchCV doesn’t utilise all available cores

I’m using RandomizedSearchCV to optimize and evaluate several ML models. I’m trying to run the optimization process using joblib Parallel(). But, when running my code on an HPC using 16 cores, only two of them are used. jobs = 16 x = Parallel(n_jobs=jobs, backend=’multiprocessing’, verbose=3)(delayed(fit)(m, X_train, y_train, n_iter= 3, cv…

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Unsure how to run FastQC on interactive node : bioinformatics

Hi all. My goal has long been to get involved in biology-problems — especially in the biomedical realm, but I haven’t had a direct path to doing so because I don’t love “doing” biology itself. For instance, I did a BS and MS in applied math with a healthy dose…

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How to use Scikit-Learn in Python [Complete Tutorial]

In this tutorial, we will focus on Scikit-Learn library usage in Python. Scikit-Learn is simple, fast and useful library used in python machine learning. It provides simple and efficient tools used in data analysis and data mining. Its free, easy to use and accessible to everyone. It is reusable in…

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biopython – Parsing a gene bank file and outputting specific feature information to a csv using Bio Python

So I am trying to parse through a gene bank file, extract particular feature information and output that information to a csv file. The example gene bank file looks like this: SBxxxxxx.LargeContigs.gbk LOCUS scaffold_31 38809 bp DNA UNK 01-JAN-1980 DEFINITION scaffold_31. ACCESSION scaffold_31 VERSION scaffold_31 KEYWORDS . SOURCE . ORGANISM…

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Senior/Junior Postdoctoral fellow in Bioinformatics

Highly motivated candidates are invited to apply for a 2-year postdoctoral position (with the possibility of an extension) in the laboratory of Assoc. Professor David Gomez-Cabrero in the Biological and Environmental Sciences and Engineering (BESE) Division at the King Abdullah University of Science and Technology (KAUST) (www.kaust.edu.sa/en/study/faculty/david-gomez-cabrero). The project investigates…

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Job – Principal Biostistician/Bioinformatics job at Kenya Medical Research

Vacancy title: Principal Biostistician/Bioinformatics [ Type: FULL TIME , Industry: Research , Category: Research ] Jobs at: Kenya Medical Research – KEMRI Deadline of this Job: 06 October 2022   Duty Station: Within Kenya , Kisumu , East Africa SummaryDate Posted: Tuesday, September 20, 2022 , Base Salary: Not Disclosed…

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Institut Pasteur de Dakar hiring Bioinformatics Analyst in Dakar, Senegal

We are looking for an enthusiastic and motivated bioinformatician to join the Epidemiology, Clinical Research, and Data Science department at the Institut Pasteur de Dakar. The selected candidate will develop and apply bioinformatics methods to support multiple projects in the area of next-generation sequencing and -omics. Minimum qualification Bachelor’s degree…

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Scientist* Bioinformatics & Statistics | datacareer.de

Mainz Work experience Research, development, teaching Become a member of the BioNTech Family! As a part of our team of more than 2.500 pioneers, you will play a key role in developing solutions for some of the most crucial scientific challenges of our age. Within less than a year, we…

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Staff Scientist Bioinformatics – Thermo Fisher Scientific

Job Profile: Staff Scientist, Bioinformatics Location: South San Francisco, California, US Job ID: 205404BR Date Posted: 19 Sept. 2022 Job Overview When you’re part of the team at Thermo Fisher Scientific, you’ll do important work, like helping customers in finding cures for cancer, protecting the environment or making sure our…

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How to Create a GGPlot with Multiple Lines

Load ggplot2 package library(ggplot2) theme_set(theme_minimal()) Data head(economics) ## # A tibble: 6 x 6 ## date pce pop psavert uempmed unemploy ## <date> <dbl> <int> <dbl> <dbl> <int> ## 1 1967-07-01 507. 198712 12.5 4.5 2944 ## 2 1967-08-01 510. 198911 12.5 4.7 2945 ## 3 1967-09-01 516. 199113 11.7…

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[Free Download] DNA Research using Biopython

[Free Download] DNA Research using Biopython DNA Research using Biopython, An Introduction To Bioinformatics, is a crash hacker course that will teach you Hybrid Developer skills. You will use your existing OOPL development skills to fly through python code effortlessly. You will first learn what is deoxyribonucleic acid (DNA) and how to work…

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Research Fellow, Bioinformatician – Cancer Science Institute job with NATIONAL UNIVERSITY OF SINGAPORE

Job Description A postdoctoral position is available immediately in Prof Chng Wee Joo’s groups for a highly motivated PhD graduate with experience in Bioinformatics (computational genomics). The focus of the lab is on deciphering transcriptional and genomic abnormalities in the context of blood cancer, including epigenetic and superenhancer deregulation, using single cell…

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Bioinformatics Intern Job Des Moines IA

Corteva Agriscience is seeking two highly capable and motivated 3 month interns to develop and deploy computational biology solutions by leveraging their knowledge of best practices to solve meaningful challenges in the areas of bioinformatics and computational biology using high performance computing.  As part of our R&D data science…

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PyTorch Flatten + 8 Examples

The PyTorch Flatten method carries both real and composite valued input tensors. The torch.flatten() method is used to flatten the tensor into a one-dimensional tensor by reshaping them. In detail, we will discuss flatten() method using PyTorch in python. And additionally, we will also cover different examples related to PyTorch…

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scikit image – Summing a Python Dictionary that Has Two Nested Keys Per Value

My Python script is designed to count the number of areas at or above a prescribed threshold using SciKit Image. It also computes the areas of these regions, and their average intensity. However, it is designed in a way such that the region coordinate is dependent on the hour coordinate,…

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Bioinformatics Scientist in Pittsburgh, PA

Description Purpose:The scientist works independently using a robust math toolbox to discover solutions for a diverse portfolio of interesting and challenging problems. The scientist develops, implements, and monitors advanced analytic, medical informatics, and predictive modeling tools for health care programs at the UPMC. The scientist normally works Monday through Friday…

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Bioinformatics phd Jobs in India, September 2022

3.8 Senior Manager -Bioinformatics Bangalore ₹350,000 – ₹627,807 (Glassdoor Est.) Understand complex research problems and design and implement bioinformatics solutions working across multiple stakeholders and customers.… 4.2 Bioinformatics Trainer/ Research Associate Noida ₹160,000 – ₹340,000 (Employer Est.) Executing biotechnology training for students. Good Knowledge of Programming Languages. Good Knowledge of…

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Data Scientist – Bioinformatics at Faculty – London, England, United Kingdom

Faculty is one of Europe’s leading applied artificial intelligence companies. We build, deploy and operate AI solutions to increase our customers’ performance and help them realise their full potential. We believe that AI should be trustworthy, impactful and beneficial across society. Those principles have shaped our work with more than…

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Eyam Vaccines and Immunotherapeutics hiring Bioinformatician in Vancouver, British Columbia, Canada

Postdoctoral Position at Eyam Vaccines and Immunotherapeutics – Bioinformatician  Eyam Vaccines and Immunotherapeutics (Eyam) is seeking an outstanding Bioinformatician. This is a unique opportunity to experience collaborative research with leading industry and academic experts. Under the direction of the Director of Bioinformatics and the Chief Scientific Officer, Dr. Paolo Ribeca…

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Research Assistant, Bioinformatician / Cancer Science Institute, NUS job with NATIONAL UNIVERSITY OF SINGAPORE

Job Description The position of Research Assistant (Bioinformatician) is immediately available in the Genome and Data Analytics Core (GeDaC) at the Cancer Science Institute of Singapore (CSI) — a part of National University of Singapore. The CSI GeDaC is building a platform to facilitate the automated processing and analysis of…

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[Internship] Bioinformatics Intern, Fall 2022 at Harmonic Discovery (United States)

About Us Based in NYC, Harmonic Discovery is a biotechnology company leveraging biology, medicinal chemistry, and machine learning to create a new generation of therapeutics for oncology and autoimmune disorders. We look for passionate innovators, radical thinkers, and collaborative builders. It’s time to integrate our understanding of biology and chemistry…

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