Tag: python

Introduction to Python & Cloud Computing with Google Gemini is an innovative workshop designed for beginners who are eager to delve into the world of cloud computing and AI. This workshop focuses on harnessing the power of Python, a leading programming language, in combination with Google Cloud’s cutting-edge products: Gemini…

Job Details Auckland, Auckland, New Zealand Netvalue Ltd Posted 1 day ago Want updates for this and similar Jobs? This advertiser has chosen not to accept applicants from your region. Full Job Description Bioinformatics Developer (Intermediate to Senior) Bioinformatics Developer (Intermediate to Senior) 15 openings But enough about us, what…

Details Posted: 09-Feb-24 Location: New York, New York Salary: Open Categories: Academic/Faculty Medical – Clinical Senior Bioinformatics Analyst Title: Senior Bioinformatics Analyst Location: Upper East Side Org Unit: Steven Josefowicz Lab Work Days: Monday-Friday Exemption Status: Exempt Salary Range: $108,600.00 – $126,600.00 *As required under NYC Human Rights Law Int…

Working with UsChallenging. Meaningful. Life-changing. Those aren’t words that are usually associated with a job. But working at Bristol Myers Squibb is anything but usual. Here, uniquely interesting work happens every day, in every department. From optimizing a production line to the latest breakthroughs in cell therapy, this is work…

*****This company is a Data Consultancy & Solution Provider with high-profile clients that works with Data Scientists, Data Engineers, and Software Engineers to solve any & all business problems. (Data & Analytics Strategy, Data Governance, Data Warehousing, Predictive Analytics, & Cloud BI Services) Machine Learning Engineer (Vertex AI) Job Title:…

Join the HJF Team!The Henry M. Jackson Foundation for the Advancement of Military Medicine (HJF) is a nonprofit organization dedicated to advancing military medicine. We serve military, medical, academic and government clients by administering, managing and supporting preeminent scientific programs that benefit members of the armed forces and civilians alike….

warning libmamba Added empty dependency for problem type SOLVER_RULE_UPDATECould not solve for environment specsThe following packages are incompatible├─ libzlib is installable and it requires│ └─ zlib 1.2.13 _5, which can be installed;├─ mamba is installable and it requires│ └─ python_abi 3.11. _cp311, which requires│ └─ python 3.11. *_cpython, which can…

2/8/24, 5:59 PMtopic-modelling-lda.ipynb – Colaboratory 1/5# This Python 3 environment comes with many helpful analytics libraries installed # It is defined by the kaggle/python Docker image: # For example, here’s several helpful packages to load import numpy as np # linear algebra import pandas as pd # data processing, CSV…

Job DescriptionThis is a Pre-Fellowship for early career researchers wanting to establish a career in MND translational research and become MND research leaders of the future. The postholder will have a leading role in an exciting new project funded by Motor Neurone Disease Association and MND Scotland. The project is…

Coding Softmax in PyTorch with Triton Introduction Setting up the VS Code Editor Importing Libraries Creating a Sample Tensor Coding Softmax in PyTorch Understanding the Softmax Function Implementing Naive Softmax testing the Softmax Functions Comparing Results in PyTorch and Triton Conclusion In this article, we will explore the concept of…

Summary: We are seeking an experienced and passionate Google Cloud Platform AI Engineer to join our team and drive innovation through the application of artificial intelligence solutions on the Google Cloud Platform (Google Cloud Platform). The ideal candidate will have a strong understanding of AI principles, cloud computing, and a…

Unlocking PyTorch’s Power: Introducing TorchInductor 2.0 Introduction Principles of Torch Inductor Torch Inductor as PyTorch Native Python First Approach Focus on General Design Technologies Used in Torch Inductor Defined-by-Run Loop Level AR Support for Dynamic Shapes and Strides with Senpai Leveraging the Triton Language Understanding Mine by Run Loop Level…

At Cepheid, we are passionate about improving health care through fast, accurate diagnostic testing. Our mission drives us, every moment of every day, as we develop scalable, groundbreaking solutions to solve the world’s most complex health challenges. Our associates are involved in every stage of molecular diagnostics, from ideation to…

I’m training a classifier on raw-bytes in binary files. Each file can be several megabytes long. I have a dataset with several millions of binaries in it. Loading all this data at once and keeping it all in memory is very expensive, so I wanted to write an IterableDataset to…

So I am using kubeflow Containerized Python Components to create a Vertex AI training pipeline. As the last step of the pipeline, I would like to build and push a custom prediction container using a Custom Prediction Routine, with the newly trained model baked in. In the Dockerfile that creates…

The Biopython logo Biopython is a set of tools for doing all sorts of genomics tasks: reading DNA and RNA, aligning sequences, analyzing similarities between sequences, and more. This is the second part in a series on analyzing coronavirus RNA with Python. Here we’ll install Biopython and use it to…

Abstract The speed and accuracy of deep learning-based structure prediction algorithms makes it now possible to perform in silico pull-downs to identify protein-protein interactions at a proteome-wide scale. However, existing scoring algorithms struggle to accurately identify correct interactions at such a large scale, resulting in an excessive number of false…

Job Description: 1) Use Nextflow to build bioinformatics pipelines that take FASTQ or BAM files as input and process them using bioinformatic tools. 2) Write Python/R scripts to process, summarize, and visualize outputs created by other tools. 3) Ensure that the pipeline is modular and flexible, with the ability to…

bj631 January 19, 2024, 10:45pm 1 I’m trying to preview a .qmd file using quarto with jupyter in VS Code. There is a little banner in the bottom right corner that shows up when trying to render the .qmd that says ” command ‘quarto.preview’ not found “. It is a…

I am trying to trim paired end reads using Trim-Galore. I have made sure that the files match based on the total reads processed in the output txt file from trim-galore. One of the files trimmed correctly but when I try some of the others the total written and quality…

Job Portal Postdoc/assistant professor in molecular biology and bioinformatics: Structural variations associated to circular DNA in cancer Department of Biology, Faculty of Science at University of Copenhagen is offering a position in molecular biology and bioinformatics for a Postdoc/assistant professor for the analysis of extrachromosomal circular DNA in 1 April…

Jan. 19, 2024 — Over 18 million people worldwide are annually diagnosed with cancer, with each case hiding many mutations in its genome. Understanding these mutations furthers cancer research, while also providing a deeper understanding to create possible cures, therapies and prevention strategies. The Triton Shared Computer Cluster at the…

I’m busy with a research project in materials science and I’m using LAMMPS for my simulations. My goal is to find the energy required for an atom to bind to the 111 surface of an fcc metal surface. I’ve successfully achieved this using periodic boundary conditions, but I need to…

Animals and samples The study included 10 pigs, 8 pigs were bred at the INRAE experimental farm (doi.org/doi.org/10.15454/1.5572415481185847E12) and 2 pigs come from breeding organizations in accordance with the French and European legislation on animal welfare. The animals belong to the same family, except for one LW animal. Animals were…

Hi, I’m trying to run a batch text prediction job using text-bison mode. I’m following the below instructions: cloud.google.com/vertex-ai/docs/generative-ai/text/batch-prediction-genai The batch works fine if the format is JSONL and reading from GS location, however for BigQuery, I keep getting the below error: Failed to import data. Not found: Dataset f70b83447d1a80046-tp:llm_bp_tenant_dataset_3263592060199895040…

All jobs > Research > International Centre of Insect Physiology and Ecology (icipe) – Postdoctoral Research Fellow (Bioinformatics) International Centre of Insect Physiology and Ecology (icipe) Get a free C.V. review by sending your C.V. to submitcv@careerassociated.com or click the following link. Submit C.V.! use the subject heading REVIEW. IMPORTANT: Read the…

 The people of Memorial Sloan Kettering Cancer Center (MSK) are united by a singular mission: ending cancer for life. Our specialized care teams provide personalized, compassionate, expert care to patients of all ages. Informed by basic research done at our Sloan Kettering Institute, scientists across MSK collaborate to conduct innovative…

Cell proliferation and aggregation dynamics modeling The aggregation process is characterized by the dynamic evolution of a density profile of aggregates. Let \(\phi (x,t)\) denote the average number of aggregates or clusters of size \(x\) (i.e., mass and volume) at time \(t\), where mass is equal to a buoyant density…

Unlike high school lessons and exams, competitions can offer some much-needed practical experience. Participating in data science competitions not only allows you to hone your coding and analytical skills but also provides hands-on experience in tackling real-world problems. These competitions act as a dynamic playground where you can put your…

Post-Doctoral and PhD positions: Join our vibrant team! We are currently hiring for various positions – Curators, Post-Docs, PhD, and Master Students. If you are passionate about Bioinformatics and Computational Biology, with a keen interest in Systems Biology, Network-Based, Multi-omic Integration, and deep learning, we want to hear from you!…

Dear all, As a new participant here, I wish to respect the established norms and guidelines – so should there be any nuances I may miss, I welcome your guidance. I am posting to share with you DataLab, a new open-source platform mainly used for image processing and based on…

Analytics Insight has listed top 10 AI remote job opportunities hiring in India Sriram Raghavan, IBM Research AI VP, highlighted IBM’s collaboration with NASA for an advanced AI model during recent AI events in India. Discussing AI’s role in preventing Black Swan events, he showcased the AI Alliance launch with…

Leveraging Google’s Data and AI Technologies with Kaggle Introduction The Growth of Kaggle within Google The Kaggle Community 3.1 The Technical Professional Community 3.2 Learning and Skill Enhancement 3.3 Sharing and Collaboration Kaggle Products and Features 4.1 Kernels: An in-browser Coding Environment 4.2 Forums: Active Technical Discussion Platform 4.3 Events:…

I am using Dataspell to work in a Jupyter Notebook with an conda environment. When I try to display a IPython.display.SVG graphic, it is not rendered correctly and parts are cut off. I am following along this tutorial. When I use the SVG function imported from from IPython.display import SVG…

Given a txt input which represents extracted resume (or “CV” outside of the US) data, pass the text to an AI model and return a JSON version of the original input. I have created the below script, which tries to prompt gpt3-turbo in order to process and return the JSON….

In the rapidly evolving landscape of data science, proficiency extends beyond just technical know-how. To truly excel in this field, aspiring data scientists must cultivate a diverse skill set that encompasses both technical expertise and softer, more nuanced abilities. Here are the top 10 skills to prioritize: 1. Programming Proficiency…

Are you passionate about significantly improving the future of medicine? Do you believe that people are the most important asset of any company? If so, join AmplifyBio! AmplifyBio is a company dedicated to building an integrated environment where clients can access technologies, platforms, capabilities and safety testing for the scale…

Revolutionary AI Advances: Ophelia AI, Pytorch Transition, and Overtrust in XAI Table of Contents: Introduction Ophelia: An Artificial Intelligence Chatbot 2.1 Purpose of Ophelia 2.2 Ophelia’s Conversational Abilities The Importance of Artificial Intelligence Explainability AI Applications in Different Industries 4.1 Greeting Guests at Hotels 4.2 Acting as a Host at…

Fundamentals of Machine Learning through Python, Python, Scikit-Learn, and Practical ML: From Basics to Projects. Unlock the potential of machine learning with our comprehensive course, “Mastering Machine Learning: From Fundamentals to Practical Projects with Python and Scikit-Learn.” Tailored for aspiring data enthusiasts and programmers, this course is an immersive journey…

A technology services client of ours is looking for AI Engineer on their ongoing projects   Below are the additional details of this role:     Required Skills: Master’s degree in Computer Science, Artificial Intelligence, Machine Learning, or a related field. Minimum of two years of professional experience in the…

AMD Ryzen 9 5900X 12-Core testing with a ASUS TUF GAMING B550M-PLUS (WI-FI) (1801 BIOS) and MSI NVIDIA GeForce RTX 3080 10GB on Ubuntu 22.04 via the Phoronix Test Suite. Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2312292-NE-PYTORCHAL51…

Hadoop is an open-source big data analytics platform headquartered in Baltimore, Maryland. The solution evolved from the Google File System paper published by Doug Cutting and Mike Cafarella in October 2003 as part of the Apache Nutch project. The co-founders moved the platform to the Hadoop subproject in 2006. In…

cmndln December 30, 2023, 3:16am 1 Dear, With LibreTranslate depending on pytorch trying to get libtranslate to work with AMD rocm/openCL. The intent is to use ARGOS_DEVICE_TYPE=auto ./libretranslate –update-models –suggestions –host 0.0.0.0 –port 5000 To that end I’ve used Start Locally | PyTorch with Stable Linux Pip Python Rocm/5.6 which…

Deep Learning with Python and PyTorch, Certificate Practice Exam   About the Service: The Risk Management in Development Projects, Certificate Practice Exam provides professionals with a comprehensive understanding of risk management principles and strategies in the context of development projects. This certification program focuses on the utilization of Big Data…

AI/ML Engineer Job in LTIMindtree at Other Maharashtra,Pune -Job Description #13777457 – Shine.com Hi Job Details AL/ML Engineer Mandatory Skills- Design and implement AI/ML models and solutions using Google Cloud Platform technologies, including Vertex AI, TensorFlow, PyTorch and Cloud TPUs. Design and implement AI/ML models. Develop a deep understanding of…

I was trying to undertand how does CTC loss work and generated some “input data” and “ground truth data”, send them to CTC loss function and got strange results. For example: *”|” – is vocab[4] – blank char* Try #1 “exelent guess”: 2 words: “acb” “acc” 2 guesses: “a|ccc|b” “aaa|ccc|cccc”…

Academic Job Category Faculty Non Bargaining Job Title Research Associate – Bioinformatics, Cancer Proteomics & Personalized Medicine Department Lange Laboratory | Department of Pathology and Laboratory Medicine | Faculty of Medicine (Philipp Lange) Posting End Date January 31, 2024 Note: Applications will be accepted until 11:59 PM on the day…

The Evolving Future of PyTorch Mobile Introduction Importance of On-Device Machine Learning Growth and Evolution of On-Device ML Current State of On-Device ML in Fighters Challenges in On-Device ML The Future of On-Device ML Support Principles of the New Software Stack Semantic Consistency in Fighters User Extensibility in On-Device ML…

For 75 years, Charles River employees have worked together to assist in the discovery, development and safe manufacture of new drug therapies. When you join our family, you will have a significant impact on the health and well-being of people across the globe. Whether your background is in life sciences, finance,…

a python beginner here. I have a fasta file with 2500+ sequences, and after doing some analysis I want to remove around 200+ sequences based on the matching IDs. Now, I have one fasta file (as sample.fa) and a text file with a list of IDs for the sequences that…

Team Leader Bioinformatics – Ryvu Therapeutics, Krakow Team Leader Bioinformatics Ryvu Therapeutics Krakow, Poland As Bioinformatics Team Leader you will be responsible for development of this area within Data Science department which includes managing and growing the team, setting and executing short and long term plans, propagating collaboration with other…

extract sequence from genome by region 2 fasta • 277 views • link updated 1 hour ago by Ram 42k • written 6 hours ago by gernophil ▴ 40 you can integrate Bioio in Python by using subprocess module. subprocess is a built-in Python module. here is an example: import…

When I run following code for dynamic quantization it starts training with some random natural images for 100 epochs, I don’t want to do training again. I have pretrained weights, I just want to quantize my pretrained weights to reduce inference time: from ultralytics import YOLO import torch import torch.quantization…

Following on from Google’s recent launch announcement for Gemini (its new super-powered foundation model family), Google has now announced the launch of AI Studio to enable the development of apps and chatbots using Gemini. Gemini (Pro)  Google recently announced the introduction of its largest and most capable AI model, Gemini….

Let’s shape the future – University of Antwerp The University of Antwerp is a dynamic, forward-thinking, European university. We offer an innovative academic education to more than 20000 students, conduct pioneering scientific research and play an important service-providing role in society. We are one of the largest, most international and most innovative…

EMBO is a not-for-profit organization that promotes excellence in life sciences in Europe and beyond. We fund talented researchers at all stages of their careers, stimulate scientific exchanges through high-quality academic publishing, conferences and lectures, and help build a research environment where scientists can achieve their best work. Our international…

Gemini, Google’s newest artificial intelligence (AI) creation, has become one of the most talked about tools in 2023. Its immense potential and varied applications have left a mark on various sectors, including gaming. Google Gemini has emerged as a powerful ally in the world of game development, offering versatile solutions…

The Collaborative Research Centre 1381 “Dynamic organization of cellular protein machineries: From biogenesis and modular assembly to function” is looking for a Postdoctoral Scientist (f/m/d) in Bioinformatics / Computational Proteomics Bewerbungsfrist: 15.01.2024 Veröffentlicht: 19.12.2023 Start-date: At the earliest possible date. Fulltime position Kennziffer: 00003485 Beschreibung The position is embedded in…

Key Points Question  What is the association of PIK3CA mutations, response to therapy, and outcome by hormone receptor (HR) status and intrinsic subtype among patients with ERBB2/HER2-positive early breast cancer (EBC) treated in a clinical trial? Findings  In this cohort study of 184 patients enrolled in the phase 3 trial…

Roche PhD Student – Bioinformatics approaches for understanding patient response to immunotherapy (temporary contract) The Position In Roche’s Pharmaceutical Research and Early Development organisation (pRED), we are united by our mission to transform science into medicines. We develop transformative therapies for patients in order to tackle some of the world’s…

Parallel Computing With R & Rstudio: Complete Tutorial GuidePublished 12/2023MP4 | Video: h264, 1920×1080 | Audio: AAC, 44.1 KHzLanguage: English | Size: 1.30 GB | Duration: 1h 30m R Programming, RStudio, Parallel Computing, Multicore, Data Science, Speed Optimization What you’ll learn Understand core parallel computing concepts. Explore essential R packages…

Job Description Who we are Genomines is a young biotechnology company based in Paris and Saclay, specialized in sustainable extraction of Nickel from plants. The mission of Genomines is to usher in a new era of sustainable mining by using genetically enhanced plants to extract metals from soil (agromining). Through…

Posting InformationPosting Information Department Renaissance Computing Inst-637100 Career Area Information Technology Posting Open Date 09/14/2023 Application Deadline 01/02/2024 Open Until Filled No Position Type Permanent Staff (EHRA NF) Working Title Bioinformatics Data Scientist Appointment Type EHRA Non-Faculty Position Number 20059390, 20061324 Vacancy ID NF0007337 Full Time/Part Time Full-Time Permanent FTE…

As a Research Bioinformatician II, you will join the research team at the Center for Cardiac Arrest Prevention directed by Dr. Sumeet Chugh and located within the Cedars-Sinai Smidt Heart Institute. The overall goal of this Center is to predict and prevent sudden cardiac arrest, a mostly lethal condition. You…

Hi all I am trying to perform scan on an openapi definition file (api-qa-clone.json) .Some APIs in this definition file are open and some require token in ‘Authorization’ request header. To achieve this I am using below multi-stage Dockerfile: FROM python AS pybuildWORKDIR /tmpCOPY zap_api_automation.py .COPY options.prop .COPY api-qa-clone.json .RUN…

Job Description 6000! This is the number of associates in the Novartis Institutes for BioMedical Research (NIBR). This division is the innovation engine of Novartis, focusing on new technologies that have the potential to help produce therapeutic breakthroughs for patients. The Biologics Center (NBC) is accommodated within the Novartis Institutes…

Ethics No new aDNA data were generated for this study and we only analysed previously published and publicly available aDNA data. Identifying biological kin is a standard analysis in the aDNA field. Permission for aDNA work on the archaeological samples was granted by the respective excavators, archaeologists, curators and museum…

Learn how to create your own AI app from scratch using the latest technologies and tools In the rapidly evolving landscape of technology, artificial intelligence (AI) has emerged as a transformative force, influencing various industries. Building an AI app from scratch might seem daunting, but with the right approach and…

20 Nov 2023 by dzlab Vertex AI Pipelines are a platform for building and running machine learning workflows on Google Cloud Platform. They allow the orchestration of machine learning tasks using pre-built or custom components, and leverage the serverless and scalable infrastructure of Vertex AI. Vertex AI Pipelines is based…

Department: RECETOX – Faculty of Science Deadline: 15 Jan 2024 Start date: upon agreement Job type: full-time Job field Science and research Bursar of the Faculty of Science, Masaryk University announces an open competition for the position Postdoc in the field of Integrative Bioinformatics and Biostatistics Workplace: RECETOX, Faculty of Science, Masaryk University in…

Diagram tool 1 How can I make a diagram like this image using Python or R for 10 sets? Which tools should I use? Python Diagram R • 176 views • link updated 7 hours ago by Sajad ▴ 30 • written 11 hours ago by a3532321 • 0 That…

Job Title: Sr. Software Engineer in Test (Bioinformatics or Data Sciences) Location: Mississauga, CAD Pay Rate: DOE   Requirements: B.S. or M.S. in Computer Science, Data Sciences, Bioinformatics, Biomedical engineering or equivalent field 5+ years of experience in software development or software test engineering or data engineering Proficiency in Python,…

Basics of Python Programming: A Quick Guide for Beginners is a new Bentham Science book, edited by Krishna Kumar Mohbey and Malika Acharya Basics of Python Programming: A Quick Guide for Beginners is an essential companion to mastering the Python programming language. The editors’ primary goal in writing this book…

—–BEGIN PGP SIGNED MESSAGE—– Hash: SHA512 Format: 1.8 Date: Tue, 19 Dec 2023 15:06:46 +0100 Source: python-biopython Architecture: source Version: 1.81+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag…@lists.alioth.debian.org> Changed-By: Étienne Mollier <emoll…@debian.org> Closes: 1058967 Changes: python-biopython (1.81+dfsg-3) unstable; urgency=medium . * d/control: remove dependency on python3-unittest2. (Closes:…

by Aaron Shi, Zachary DeVito This is part 2 of the Understanding GPU Memory blog series. Our first post Understanding GPU Memory 1: Visualizing All Allocations over Time shows how to use the memory snapshot tool. In this part, we will use the Memory Snapshot to visualize a GPU memory…

Hey there, fellow code wranglers and AI enthusiasts! I’m Cami, your friendly neighborhood tech explorer, and I’m about to take you on a wild ride through my latest adventure: contributing to PyTorch without being an expert in it. Yes, you read that right! My Unexpected Journey into PyTorch So, I…

—–BEGIN PGP SIGNED MESSAGE—– Hash: SHA512 Format: 1.8 Date: Mon, 18 Dec 2023 11:17:04 +0100 Source: python-deeptools Architecture: source Version: 3.5.4+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag…@lists.alioth.debian.org> Changed-By: Étienne Mollier <emoll…@debian.org> Changes: python-deeptools (3.5.4+dfsg-1) unstable; urgency=medium . * New upstream version * d/watch: add +dfsg repack…

Welcome to the cutting edge of artificial intelligence and coding! Today, we’re diving into Google’s latest marvel in the AI world — the Vertex AI Gemini API. This isn’t just another AI tool; it’s a game-changer, a glimpse into the future of how we interact with code and AI. Function…

Job Title: Sr. Software Engineer in Test (Bioinformatics or Data Sciences) Location: Mississauga, CAD Impact Healthcare Roche Sequencing is not only changing science, but we are changing lives. Our software teams are laying the groundwork for the future by developing powerful bioinformatics algorithms, data analysis tools, and software/systems infrastructures so…

I am writing a custom potential for a molecule so I want to sort all the atoms in amolecule according to their Atom ids .Any idea how that can be done ? Do you mean you already have the LAMMPS data file and you want to sort the atoms of…

Note: This is the whole question. For Exercise 6 & 7 & 8 it’s asking for a mermaid code through RStudio/Posit Cloud that generates a flowchart. Additionally, Exercise 6 & 7 & 8 is also asking for a python code that answers the questions. Also if it’s not too much…

Google has recently announced the Gemini AI, along with Imagen 2 and Duet AU for developers. These can be used to develop tools and integrate them into their products and services. All of these are available with Gemini, Imagen 2, and Duet AI on Vertex AI (Google Cloud API solution…

You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/ampere3/data/132releng-armv7-default/1dd4264fe4a8/logs/py39-pytorch-2.1.1_1.log Build URL: pkg-status.freebsd.org/ampere3/build.html?mastername=132releng-armv7-default&build=1dd4264fe4a8 Log: =>> Building misc/py-pytorch build started at Tue Dec 19…

Details Posted: 19-Dec-23 Location: Chicago, Illinois Type: Full-time Salary: Open Categories: Research – Laboratory/Non-Laboratory Staff/Administrative Location: Chicago, IL Job Description: Development of an integrated data warehouse for symbiote including clinical, microbiome sequence, and metabolomic data.  Management of DFI Biobank, MMF, and HMMF data within the Symbiote platform. Functional analysis of…

Job Title: Sr. Software Engineer in Test (Bioinformatics or Data Sciences) Remote Description: Responsibilities: •         Implement and maintain an end-to-end automation test framework for running UI integration tests and quality dashboards using various tools: Java, JavaScript/TypeScript, Cypress, Selenium WebDriver, Cucumber, TestNG, Junit •         Design and develop requirements based test cases •         Implement automated…

Our company is a Silicon Valley based biotech startup focusing on non-invasive diagnostics (liquid biopsy) to facilitate early detection of cancer. We are developing systems that will provide the most sensitive, accurate, and robust NGS-based ctDNA mutation detection. We are looking for a highly motivated Scientist to join our Bioinformatics…

I downloaded Era5 single level data using Python, where I tried to calculate daily_means from hourly data prior to downloading. I read the returned NetCDF-file into RStudio using nc_file <- “path/download.nc” raster_data <- raster::brick(nc_file) This results in a LargeRasterBrick (with more than 5 million elements) of type S4. From here…

About UsEmpirico is a venture-backed, next-generation therapeutics company founded on utilizing huge biological datasets, human genetics and programmable biology to power novel target discovery and development. Empirico’s Precision Insights Platform was purpose-built for therapeutic discovery and leverages a world-leading dataset and advanced algorithmic approaches to identify and prioritize therapeutic targets…

Master Image Segmentation with PyTorch U-NET Introduction Building the Model Preprocessing the Data Loading the Data Training the Model Evaluating Model Performance Saving and Loading the Model Visualizing Predictions Conclusion Frequently Asked Questions In this article, we will learn how to perform image segmentation in PyTorch. We will start by…

Embarking on the journey of integrating artificial intelligence into your projects can be both exciting and daunting. Google’s Gemini API stands as a beacon of innovation, offering a plethora of possibilities to enhance and streamline various aspects of your projects.  Whether you’re a seasoned developer or a beginner in the…

Position Summary: Stealth NewCo is a discovery-stage biotechnology company leveraging insights in RNA biology to discover and develop new therapeutics for indications across multiple disease areas including oncology and neuromuscular disorders. We are seeking a talented Bioinformatics and Data Science Senior/Principal Scientist with experience analyzing multidimensional chemical, biological, and sequencing…

Department BSD DFI – Translational Informatics About the Department The Duchossois Family Institute focuses on the role of commensal bacteria in enhancing disease resistance and is using genomic and metabolomic platforms to characterize the microbiome and its metabolites. Computational and bioinformatic expertise is required to understand how commensal bacteria impact…

Snakemake error AttributeError: ‘Resources’ object has no attribute ‘tmpdir’ 0 I have built a Snakemake pipeline which has been designed for paired-end reads. I have made a trial with single-end reads, and got this error. I am not sure it is related to the change of reads design, and to…

What is Kaggle Kaggle is a platform where machine learning and data science enthusiasts share their knowledge through data sets and free resources. Kaggle is very helpful for Computer science and Engineering Students and IT Professionals to develop projects in various fields such as Machine Learning, Data Science, Artificial intelligence,…

–Must See– Mapmygenome Jobs For Bioinformatics – Analyst Vacancy Hot Job Opportunity: Bioinformatics Analyst at Mapmygenome™! Mapmygenome™ is a leading genomics company based in Hyderabad. We specialize in providing personalized healthcare solutions based on an individual’s genetic makeup. Our mission is to empower individuals to make informed choices about their…

Description Convenor: Alexia Cardona (CDH RSE Methods Fellow) Please note this workshop has limited spaces and an application process in place. Application forms should be completed by noon, Friday 16 February 2024. Successful applicants will be notified by the end-of-day Wednesday 21 February 2024. Version control helps you to write…

In this article we provide an overview on the Convolutional Neural Networks (CNNs) main building features and how to implement them in PyTorch. This article was written together with chiara giovagnoli Image taken from Unsplash A Convolutional Neural Network (CNN) is a type of deep learning algorithm designed for processing…

You can use index_select: torch.index_select(x, dim=dim, index=torch.tensor(x.size(dim) – 1)) The output tensor would contain the same number of dimensions as the input. You can use squeeze on the dim to get rid of the extra dimension: torch.index_select(x, dim=dim, index=torch.tensor(x.size(dim) – 1)).squeeze(dim=dim) Note: While select returns a view of the input…

Machine learning models are at the heart of data-driven solutions, enabling computers to learn patterns from data and make predictions or decisions. Python, with its rich ecosystem of libraries, offers a diverse range of machine learning models. Let’s delve into some popular ones: Linear RegressionLinear regression is a fundamental supervised…

Book Description As the open-source and free competitor to expensive software like Maple™, Mathematica&reg, Magma, and MATLAB(R), Sage offers anyone with access to a web browser the ability to use cutting-edge mathematical software and display his or her results for others, often with stunning graphics. This book is a gentle…