Tag: python

See #BuildWithAI: Introduction to Python & Cloud Computing with Google Gemini

Introduction to Python & Cloud Computing with Google Gemini is an innovative workshop designed for beginners who are eager to delve into the world of cloud computing and AI. This workshop focuses on harnessing the power of Python, a leading programming language, in combination with Google Cloud’s cutting-edge products: Gemini…

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Bioinformatics Developer (Intermediate To Senior) in New Zealand

Job Details Auckland, Auckland, New Zealand Netvalue Ltd Posted 1 day ago Want updates for this and similar Jobs? This advertiser has chosen not to accept applicants from your region. Full Job Description Bioinformatics Developer (Intermediate to Senior) Bioinformatics Developer (Intermediate to Senior) 15 openings But enough about us, what…

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Senior Bioinformatics Analyst in New York, NY for Weill Cornell Medicine

Details Posted: 09-Feb-24 Location: New York, New York Salary: Open Categories: Academic/Faculty Medical – Clinical Senior Bioinformatics Analyst Title: Senior Bioinformatics Analyst Location: Upper East Side Org Unit: Steven Josefowicz Lab Work Days: Monday-Friday Exemption Status: Exempt Salary Range: $108,600.00 – $126,600.00 *As required under NYC Human Rights Law Int…

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Bristol Myers Squibb hiring Machine Learning/AI Scientist Computational Tissue Imaging Research, Translational Bioinformatics in Cambridge, MA

Working with UsChallenging. Meaningful. Life-changing. Those aren’t words that are usually associated with a job. But working at Bristol Myers Squibb is anything but usual. Here, uniquely interesting work happens every day, in every department. From optimizing a production line to the latest breakthroughs in cell therapy, this is work…

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CorGTA Inc. hiring Machine Learning Engineer (Vertex AI) in Canada

*****This company is a Data Consultancy & Solution Provider with high-profile clients that works with Data Scientists, Data Engineers, and Software Engineers to solve any & all business problems. (Data & Analytics Strategy, Data Governance, Data Warehousing, Predictive Analytics, & Cloud BI Services) Machine Learning Engineer (Vertex AI) Job Title:…

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The Henry M. Jackson Foundation for the Advancement of Military Medicine hiring Senior Bioinformatics Scientist in Bethesda, MD

Join the HJF Team!The Henry M. Jackson Foundation for the Advancement of Military Medicine (HJF) is a nonprofit organization dedicated to advancing military medicine. We serve military, medical, academic and government clients by administering, managing and supporting preeminent scientific programs that benefit members of the armed forces and civilians alike….

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Skingpt4 errors python – Models

warning libmamba Added empty dependency for problem type SOLVER_RULE_UPDATECould not solve for environment specsThe following packages are incompatible├─ libzlib is installable and it requires│ └─ zlib 1.2.13 _5, which can be installed;├─ mamba is installable and it requires│ └─ python_abi 3.11. _cp311, which requires│ └─ python 3.11. *_cpython, which can…

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Topic Modelling with LDA: A Comprehensive Guide for Students

2/8/24, 5:59 PMtopic-modelling-lda.ipynb – Colaboratory 1/5# This Python 3 environment comes with many helpful analytics libraries installed # It is defined by the kaggle/python Docker image: # For example, here’s several helpful packages to load import numpy as np # linear algebra import pandas as pd # data processing, CSV…

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King’s College London hiring Research Associate in Translational Bioinformatics in London, England, United Kingdom

Job DescriptionThis is a Pre-Fellowship for early career researchers wanting to establish a career in MND translational research and become MND research leaders of the future. The postholder will have a leading role in an exciting new project funded by Motor Neurone Disease Association and MND Scotland. The project is…

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Coding Softmax in PyTorch with Triton

Coding Softmax in PyTorch with Triton Introduction Setting up the VS Code Editor Importing Libraries Creating a Sample Tensor Coding Softmax in PyTorch Understanding the Softmax Function Implementing Naive Softmax testing the Softmax Functions Comparing Results in PyTorch and Triton Conclusion In this article, we will explore the concept of…

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Google Cloud Platform AI Engineer – Volto Consulting

Summary: We are seeking an experienced and passionate Google Cloud Platform AI Engineer to join our team and drive innovation through the application of artificial intelligence solutions on the Google Cloud Platform (Google Cloud Platform). The ideal candidate will have a strong understanding of AI principles, cloud computing, and a…

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Unlocking PyTorch’s Power: Introducing TorchInductor 2.0

Unlocking PyTorch’s Power: Introducing TorchInductor 2.0 Introduction Principles of Torch Inductor Torch Inductor as PyTorch Native Python First Approach Focus on General Design Technologies Used in Torch Inductor Defined-by-Run Loop Level AR Support for Dynamic Shapes and Strides with Senpai Leveraging the Triton Language Understanding Mine by Run Loop Level…

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Danaher Jobs – Principal Bioinformatics Scientist

At Cepheid, we are passionate about improving health care through fast, accurate diagnostic testing. Our mission drives us, every moment of every day, as we develop scalable, groundbreaking solutions to solve the world’s most complex health challenges. Our associates are involved in every stage of molecular diagnostics, from ideation to…

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python – Reading files asynchronously hangs within Pytorch Dataset when DataLoader.num_workers > 1

I’m training a classifier on raw-bytes in binary files. Each file can be several megabytes long. I have a dataset with several millions of binaries in it. Loading all this data at once and keeping it all in memory is very expensive, so I wanted to write an IterableDataset to…

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Vertex AI docker in docker: Cannot connect to the Docker daemon

So I am using kubeflow Containerized Python Components to create a Vertex AI training pipeline. As the last step of the pipeline, I would like to build and push a custom prediction container using a Custom Prediction Routine, with the newly trained model baked in. In the Dockerfile that creates…

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How to Analyze Coronavirus RNA with Python (Part 2: Installing Biopython) | by Proto Bioengineering | Feb, 2024

The Biopython logo Biopython is a set of tools for doing all sorts of genomics tasks: reading DNA and RNA, aligning sequences, analyzing similarities between sequences, and more. This is the second part in a series on analyzing coronavirus RNA with Python. Here we’ll install Biopython and use it to…

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AlphaCRV: A Pipeline for Identifying Accurate Binder Topologies in Mass-Modeling with AlphaFold

Abstract The speed and accuracy of deep learning-based structure prediction algorithms makes it now possible to perform in silico pull-downs to identify protein-protein interactions at a proteome-wide scale. However, existing scoring algorithms struggle to accurately identify correct interactions at such a large scale, resulting in an excessive number of false…

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Insight Global hiring Bioinformatics Software Engineer in Tennessee, United States

Job Description: 1) Use Nextflow to build bioinformatics pipelines that take FASTQ or BAM files as input and process them using bioinformatic tools. 2) Write Python/R scripts to process, summarize, and visualize outputs created by other tools. 3) Ensure that the pipeline is modular and flexible, with the ability to…

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Problems rendering a quarto qmd file through jupyter in VS Code – JupyterHub

bj631 January 19, 2024, 10:45pm 1 I’m trying to preview a .qmd file using quarto with jupyter in VS Code. There is a little banner in the bottom right corner that shows up when trying to render the .qmd that says ” command ‘quarto.preview’ not found “. It is a…

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invalid deflate data (invalid code lengths set)

I am trying to trim paired end reads using Trim-Galore. I have made sure that the files match based on the total reads processed in the output txt file from trim-galore. One of the files trimmed correctly but when I try some of the others the total written and quality…

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Postdoc/assistant professor in molecular biology and bioinformatics: Structural variations associated to circular DNA in cancer – University of Copenhagen – job portal

Job Portal Postdoc/assistant professor in molecular biology and bioinformatics: Structural variations associated to circular DNA in cancer Department of Biology, Faculty of Science at University of Copenhagen is offering a position in molecular biology and bioinformatics for a Postdoc/assistant professor for the analysis of extrachromosomal circular DNA in 1 April…

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UC San Diego’s Bioengineering Team Uses TSCC at SDSC for Bioinformatics Tool

Jan. 19, 2024 — Over 18 million people worldwide are annually diagnosed with cancer, with each case hiding many mutations in its genome. Understanding these mutations furthers cancer research, while also providing a deeper understanding to create possible cures, therapies and prevention strategies. The Triton Shared Computer Cluster at the…

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Adding an atom onto a surface while using fix wall/region – LAMMPS Beginners

I’m busy with a research project in materials science and I’m using LAMMPS for my simulations. My goal is to find the energy required for an atom to bind to the 111 surface of an fcc metal surface. I’ve successfully achieved this using periodic boundary conditions, but I need to…

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Detection of DNA methylation signatures through the lens of genomic imprinting

Animals and samples The study included 10 pigs, 8 pigs were bred at the INRAE experimental farm (doi.org/doi.org/10.15454/1.5572415481185847E12) and 2 pigs come from breeding organizations in accordance with the French and European legislation on animal welfare. The animals belong to the same family, except for one LW animal. Animals were…

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batchPredictionJobs using BigQuery – Google Cloud Community

Hi, I’m trying to run a batch text prediction job using text-bison mode. I’m following the below instructions: cloud.google.com/vertex-ai/docs/generative-ai/text/batch-prediction-genai The batch works fine if the format is JSONL and reading from GS location, however for BigQuery, I keep getting the below error: Failed to import data. Not found: Dataset f70b83447d1a80046-tp:llm_bp_tenant_dataset_3263592060199895040…

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Career Associated – International Centre of Insect Physiology and Ecology (icipe)

All jobs > Research > International Centre of Insect Physiology and Ecology (icipe) – Postdoctoral Research Fellow (Bioinformatics) International Centre of Insect Physiology and Ecology (icipe) Get a free C.V. review by sending your C.V. to submitcv@careerassociated.com or click the following link. Submit C.V.! use the subject heading REVIEW. IMPORTANT: Read the…

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Memorial Sloan Kettering Cancer Center hiring Bioinformatics Software Engineer III – Chan Lab in New York, NY

 The people of Memorial Sloan Kettering Cancer Center (MSK) are united by a singular mission: ending cancer for life. Our specialized care teams provide personalized, compassionate, expert care to patients of all ages. Informed by basic research done at our Sloan Kettering Institute, scientists across MSK collaborate to conduct innovative…

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Stochastic biological system-of-systems modelling for iPSC culture

Cell proliferation and aggregation dynamics modeling The aggregation process is characterized by the dynamic evolution of a density profile of aggregates. Let \(\phi (x,t)\) denote the average number of aggregates or clusters of size \(x\) (i.e., mass and volume) at time \(t\), where mass is equal to a buoyant density…

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10 Kaggle Competitions Every Young Data Scientist Should Check Out

Unlike high school lessons and exams, competitions can offer some much-needed practical experience. Participating in data science competitions not only allows you to hone your coding and analytical skills but also provides hands-on experience in tackling real-world problems. These competitions act as a dynamic playground where you can put your…

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Post-Doctoral and PhD positions, La Sapienza University, Italy

Post-Doctoral and PhD positions: Join our vibrant team! We are currently hiring for various positions – Curators, Post-Docs, PhD, and Master Students. If you are passionate about Bioinformatics and Computational Biology, with a keen interest in Systems Biology, Network-Based, Multi-omic Integration, and deep learning, we want to hear from you!…

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DataLab 0.10 / A new image processing platform (based on Python, scikit-image, …) – Announcements

Dear all, As a new participant here, I wish to respect the established norms and guidelines – so should there be any nuances I may miss, I welcome your guidance. I am posting to share with you DataLab, a new open-source platform mainly used for image processing and based on…

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AI Remote Jobs 2024: 10 Opportunities in India

Analytics Insight has listed top 10 AI remote job opportunities hiring in India Sriram Raghavan, IBM Research AI VP, highlighted IBM’s collaboration with NASA for an advanced AI model during recent AI events in India. Discussing AI’s role in preventing Black Swan events, he showcased the AI Alliance launch with…

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Leveraging Google’s Data and AI Technologies with Kaggle

Leveraging Google’s Data and AI Technologies with Kaggle Introduction The Growth of Kaggle within Google The Kaggle Community 3.1 The Technical Professional Community 3.2 Learning and Skill Enhancement 3.3 Sharing and Collaboration Kaggle Products and Features 4.1 Kernels: An in-browser Coding Environment 4.2 Forums: Active Technical Discussion Platform 4.3 Events:…

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python – Within Jetbrain DataSpell Jupyter Notbook IPython.Display.SVG Images are not displayed fully/cut off

I am using Dataspell to work in a Jupyter Notebook with an conda environment. When I try to display a IPython.display.SVG graphic, it is not rendered correctly and parts are cut off. I am following along this tutorial. When I use the SVG function imported from from IPython.display import SVG…

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python – OpenAPI: Return structured data from text input

Given a txt input which represents extracted resume (or “CV” outside of the US) data, pass the text to an AI model and return a JSON version of the original input. I have created the below script, which tries to prompt gpt3-turbo in order to process and return the JSON….

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The Essential 10 Skills to Secure Your Dream Data Science Job | by The Tech Guy | Jan, 2024

In the rapidly evolving landscape of data science, proficiency extends beyond just technical know-how. To truly excel in this field, aspiring data scientists must cultivate a diverse skill set that encompasses both technical expertise and softer, more nuanced abilities. Here are the top 10 skills to prioritize: 1. Programming Proficiency…

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Amplifybio, LLC Sr./Scientist, Bioinformatics in South San Francisco, CA | 892968472

Are you passionate about significantly improving the future of medicine? Do you believe that people are the most important asset of any company? If so, join AmplifyBio! AmplifyBio is a company dedicated to building an integrated environment where clients can access technologies, platforms, capabilities and safety testing for the scale…

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Ophelia AI, Pytorch Transition, and Overtrust in XAI

Revolutionary AI Advances: Ophelia AI, Pytorch Transition, and Overtrust in XAI Table of Contents: Introduction Ophelia: An Artificial Intelligence Chatbot 2.1 Purpose of Ophelia 2.2 Ophelia’s Conversational Abilities The Importance of Artificial Intelligence Explainability AI Applications in Different Industries 4.1 Greeting Guests at Hotels 4.2 Acting as a Host at…

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Fundamentals of Machine Learning through Python

Fundamentals of Machine Learning through Python, Python, Scikit-Learn, and Practical ML: From Basics to Projects. Unlock the potential of machine learning with our comprehensive course, “Mastering Machine Learning: From Fundamentals to Practical Projects with Python and Scikit-Learn.” Tailored for aspiring data enthusiasts and programmers, this course is an immersive journey…

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AI Engineer – Swift Strategic Solutions Inc

A technology services client of ours is looking for AI Engineer on their ongoing projects   Below are the additional details of this role:     Required Skills: Master’s degree in Computer Science, Artificial Intelligence, Machine Learning, or a related field. Minimum of two years of professional experience in the…

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Pytorch_all_l Benchmarks – OpenBenchmarking.org

AMD Ryzen 9 5900X 12-Core testing with a ASUS TUF GAMING B550M-PLUS (WI-FI) (1801 BIOS) and MSI NVIDIA GeForce RTX 3080 10GB on Ubuntu 22.04 via the Phoronix Test Suite. Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2312292-NE-PYTORCHAL51…

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Top 20 Hadoop Competitors and Alternatives

Hadoop is an open-source big data analytics platform headquartered in Baltimore, Maryland. The solution evolved from the Google File System paper published by Doug Cutting and Mike Cafarella in October 2003 as part of the Apache Nutch project. The co-founders moved the platform to the Hadoop subproject in 2006. In…

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PyTorch hard depency blocks use of GPU running main.py? – General

cmndln December 30, 2023, 3:16am 1 Dear, With LibreTranslate depending on pytorch trying to get libtranslate to work with AMD rocm/openCL. The intent is to use ARGOS_DEVICE_TYPE=auto ./libretranslate –update-models –suggestions –host 0.0.0.0 –port 5000 To that end I’ve used Start Locally | PyTorch with Stable Linux Pip Python Rocm/5.6 which…

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Deep Learning with Python and PyTorch, Certificate Practice Exam

Deep Learning with Python and PyTorch, Certificate Practice Exam   About the Service: The Risk Management in Development Projects, Certificate Practice Exam provides professionals with a comprehensive understanding of risk management principles and strategies in the context of development projects. This certification program focuses on the utilization of Big Data…

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AI/ML Engineer Job in LTIMindtree at Other Maharashtra,Pune -Job Description #13777457

AI/ML Engineer Job in LTIMindtree at Other Maharashtra,Pune -Job Description #13777457 – Shine.com Hi Job Details AL/ML Engineer Mandatory Skills- Design and implement AI/ML models and solutions using Google Cloud Platform technologies, including Vertex AI, TensorFlow, PyTorch and Cloud TPUs. Design and implement AI/ML models. Develop a deep understanding of…

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python – pytorch CTC loss works strange on my test data

I was trying to undertand how does CTC loss work and generated some “input data” and “ground truth data”, send them to CTC loss function and got strange results. For example: *”|” – is vocab[4] – blank char* Try #1 “exelent guess”: 2 words: “acb” “acc” 2 guesses: “a|ccc|b” “aaa|ccc|cccc”…

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Research Associate – Bioinformatics, Cancer Proteomics & Personalized Medicine Job in Vancouver for UBC

Academic Job Category Faculty Non Bargaining Job Title Research Associate – Bioinformatics, Cancer Proteomics & Personalized Medicine Department Lange Laboratory | Department of Pathology and Laboratory Medicine | Faculty of Medicine (Philipp Lange) Posting End Date January 31, 2024 Note: Applications will be accepted until 11:59 PM on the day…

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The Evolving Future of PyTorch Mobile

The Evolving Future of PyTorch Mobile Introduction Importance of On-Device Machine Learning Growth and Evolution of On-Device ML Current State of On-Device ML in Fighters Challenges in On-Device ML The Future of On-Device ML Support Principles of the New Software Stack Semantic Consistency in Fighters User Extensibility in On-Device ML…

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Data manager/Bioinformatics Scientist

For 75 years, Charles River employees have worked together to assist in the discovery, development and safe manufacture of new drug therapies. When you join our family, you will have a significant impact on the health and well-being of people across the globe. Whether your background is in life sciences, finance,…

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Remove sequences from a fasta file with IDs from a text file using Python

a python beginner here. I have a fasta file with 2500+ sequences, and after doing some analysis I want to remove around 200+ sequences based on the matching IDs. Now, I have one fasta file (as sample.fa) and a text file with a list of IDs for the sequences that…

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Team Leader Bioinformatics – Ryvu Therapeutics, Krakow

Team Leader Bioinformatics – Ryvu Therapeutics, Krakow Team Leader Bioinformatics Ryvu Therapeutics Krakow, Poland As Bioinformatics Team Leader you will be responsible for development of this area within Data Science department which includes managing and growing the team, setting and executing short and long term plans, propagating collaboration with other…

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extract sequence from genome by region

extract sequence from genome by region 2 fasta • 277 views • link updated 1 hour ago by Ram 42k • written 6 hours ago by gernophil ▴ 40 you can integrate Bioio in Python by using subprocess module. subprocess is a built-in Python module. here is an example: import…

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python – Dynamic quantization in Pytorch starts random training after quantization

When I run following code for dynamic quantization it starts training with some random natural images for 100 epochs, I don’t want to do training again. I have pretrained weights, I just want to quantize my pretrained weights to reduce inference time: from ultralytics import YOLO import torch import torch.quantization…

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Featured Article : Google Launches Gemini AI Studio

Following on from Google’s recent launch announcement for Gemini (its new super-powered foundation model family), Google has now announced the launch of AI Studio to enable the development of apps and chatbots using Gemini. Gemini (Pro)  Google recently announced the introduction of its largest and most capable AI model, Gemini….

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Doctoral scholarship holder bioinformatics – Academic Positions

Let’s shape the future – University of Antwerp The University of Antwerp is a dynamic, forward-thinking, European university. We offer an innovative academic education to more than 20000 students, conduct pioneering scientific research and play an important service-providing role in society. We are one of the largest, most international and most innovative…

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Software Developer (m/w/d), Austria – SaluteMyJob

EMBO is a not-for-profit organization that promotes excellence in life sciences in Europe and beyond. We fund talented researchers at all stages of their careers, stimulate scientific exchanges through high-quality academic publishing, conferences and lectures, and help build a research environment where scientists can achieve their best work. Our international…

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3 Easy Ways to Use Google Gemini for Game Development

Gemini, Google’s newest artificial intelligence (AI) creation, has become one of the most talked about tools in 2023. Its immense potential and varied applications have left a mark on various sectors, including gaming. Google Gemini has emerged as a powerful ally in the world of game development, offering versatile solutions…

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Postdoctoral Scientist (f/m/d) in Bioinformatics / Computational Proteomics

The Collaborative Research Centre 1381 “Dynamic organization of cellular protein machineries: From biogenesis and modular assembly to function” is looking for a Postdoctoral Scientist (f/m/d) in Bioinformatics / Computational Proteomics Bewerbungsfrist: 15.01.2024 Veröffentlicht: 19.12.2023 Start-date: At the earliest possible date. Fulltime position Kennziffer: 00003485 Beschreibung The position is embedded in…

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Association of PIK3CA Mutation With Pathologic Complete Response and Outcome by Hormone Receptor Status and Intrinsic Subtype in Early-Stage ERBB2/HER2-Positive Breast Cancer | Oncology | JAMA Network Open

Key Points Question  What is the association of PIK3CA mutations, response to therapy, and outcome by hormone receptor (HR) status and intrinsic subtype among patients with ERBB2/HER2-positive early breast cancer (EBC) treated in a clinical trial? Findings  In this cohort study of 184 patients enrolled in the phase 3 trial…

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Roche PhD Student – Bioinformatics approaches for understanding patient response to immunotherapy (temporary contract)

Roche PhD Student – Bioinformatics approaches for understanding patient response to immunotherapy (temporary contract) The Position In Roche’s Pharmaceutical Research and Early Development organisation (pRED), we are united by our mission to transform science into medicines. We develop transformative therapies for patients in order to tackle some of the world’s…

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Complete Tutorial Guide / AvaxHome

Parallel Computing With R & Rstudio: Complete Tutorial GuidePublished 12/2023MP4 | Video: h264, 1920×1080 | Audio: AAC, 44.1 KHzLanguage: English | Size: 1.30 GB | Duration: 1h 30m R Programming, RStudio, Parallel Computing, Multicore, Data Science, Speed Optimization What you’ll learn Understand core parallel computing concepts. Explore essential R packages…

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Bioinformatics scientist | GENOMINES

Job Description Who we are Genomines is a young biotechnology company based in Paris and Saclay, specialized in sustainable extraction of Nickel from plants. The mission of Genomines is to usher in a new era of sustainable mining by using genetically enhanced plants to extract metals from soil (agromining). Through…

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University of North Carolina at Chapel Hill hiring Bioinformatics Data Scientist in North Carolina, United States

Posting InformationPosting Information Department Renaissance Computing Inst-637100 Career Area Information Technology Posting Open Date 09/14/2023 Application Deadline 01/02/2024 Open Until Filled No Position Type Permanent Staff (EHRA NF) Working Title Bioinformatics Data Scientist Appointment Type EHRA Non-Faculty Position Number 20059390, 20061324 Vacancy ID NF0007337 Full Time/Part Time Full-Time Permanent FTE…

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Research Bioinformatician II – Smidt Heart Institute – Center for Cardiac Arrest Prevention at Cedar job with Cedars-Sinai

As a Research Bioinformatician II, you will join the research team at the Center for Cardiac Arrest Prevention directed by Dr. Sumeet Chugh and located within the Cedars-Sinai Smidt Heart Institute. The overall goal of this Center is to predict and prevent sudden cardiac arrest, a mostly lethal condition. You…

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Getting 401 in openapi scan for authenticated APIs.

Hi all I am trying to perform scan on an openapi definition file (api-qa-clone.json) .Some APIs in this definition file are open and some require token in ‘Authorization’ request header. To achieve this I am using below multi-stage Dockerfile: FROM python AS pybuildWORKDIR /tmpCOPY zap_api_automation.py .COPY options.prop .COPY api-qa-clone.json .RUN…

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Data Scientist / Bioinformatician, Biologics R&D Job

Job Description 6000! This is the number of associates in the Novartis Institutes for BioMedical Research (NIBR). This division is the innovation engine of Novartis, focusing on new technologies that have the potential to help produce therapeutic breakthroughs for patients. The Biologics Center (NBC) is accommodated within the Novartis Institutes…

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Accurate detection of identity-by-descent segments in human ancient DNA

Ethics No new aDNA data were generated for this study and we only analysed previously published and publicly available aDNA data. Identifying biological kin is a standard analysis in the aDNA field. Permission for aDNA work on the archaeological samples was granted by the respective excavators, archaeologists, curators and museum…

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How To Build AI App from Scratch

Learn how to create your own AI app from scratch using the latest technologies and tools In the rapidly evolving landscape of technology, artificial intelligence (AI) has emerged as a transformative force, influencing various industries. Building an AI app from scratch might seem daunting, but with the right approach and…

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ML Pipelines on GCP with Vertex AI

20 Nov 2023 by dzlab Vertex AI Pipelines are a platform for building and running machine learning workflows on Google Cloud Platform. They allow the orchestration of machine learning tasks using pre-built or custom components, and leverage the serverless and scalable infrastructure of Vertex AI. Vertex AI Pipelines is based…

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Postdoc in the field of Integrative Bioinformatics and Biostatistics job with MASARYK UNIVERSITY

Department: RECETOX – Faculty of Science Deadline: 15 Jan 2024 Start date: upon agreement Job type: full-time Job field Science and research Bursar of the Faculty of Science, Masaryk University announces an open competition for the position Postdoc in the field of Integrative Bioinformatics and Biostatistics Workplace: RECETOX, Faculty of Science, Masaryk University in…

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Diagram tool

Diagram tool 1 How can I make a diagram like this image using Python or R for 10 sets? Which tools should I use? Python Diagram R • 176 views • link updated 7 hours ago by Sajad ▴ 30 • written 11 hours ago by a3532321 • 0 That…

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Sr. Software Engineer in Test (Bioinformatics or Data Sciences) / SDET – Key Infotek LLC

Job Title: Sr. Software Engineer in Test (Bioinformatics or Data Sciences) Location: Mississauga, CAD Pay Rate: DOE   Requirements: B.S. or M.S. in Computer Science, Data Sciences, Bioinformatics, Biomedical engineering or equivalent field 5+ years of experience in software development or software test engineering or data engineering Proficiency in Python,…

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Basics of python programming: A quick guide f

Basics of Python Programming: A Quick Guide for Beginners is a new Bentham Science book, edited by Krishna Kumar Mohbey and Malika Acharya Basics of Python Programming: A Quick Guide for Beginners is an essential companion to mastering the Python programming language. The editors’ primary goal in writing this book…

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Accepted python-biopython 1.81+dfsg-3 (source) into unstable

—–BEGIN PGP SIGNED MESSAGE—– Hash: SHA512 Format: 1.8 Date: Tue, 19 Dec 2023 15:06:46 +0100 Source: python-biopython Architecture: source Version: 1.81+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag…@lists.alioth.debian.org> Changed-By: Étienne Mollier <emoll…@debian.org> Closes: 1058967 Changes: python-biopython (1.81+dfsg-3) unstable; urgency=medium . * d/control: remove dependency on python3-unittest2. (Closes:…

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Understanding GPU Memory 2: Finding and Removing Reference Cycles

by Aaron Shi, Zachary DeVito This is part 2 of the Understanding GPU Memory blog series. Our first post Understanding GPU Memory 1: Visualizing All Allocations over Time shows how to use the memory snapshot tool. In this part, we will use the Memory Snapshot to visualize a GPU memory…

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Diving into PyTorch: A Beginner’s Tale of Contribution | by Weinheimergracia | Dec, 2023

Hey there, fellow code wranglers and AI enthusiasts! I’m Cami, your friendly neighborhood tech explorer, and I’m about to take you on a wild ride through my latest adventure: contributing to PyTorch without being an expert in it. Yes, you read that right! My Unexpected Journey into PyTorch So, I…

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Accepted python-deeptools 3.5.4+dfsg-1 (source) into unstable

—–BEGIN PGP SIGNED MESSAGE—– Hash: SHA512 Format: 1.8 Date: Mon, 18 Dec 2023 11:17:04 +0100 Source: python-deeptools Architecture: source Version: 3.5.4+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag…@lists.alioth.debian.org> Changed-By: Étienne Mollier <emoll…@debian.org> Changes: python-deeptools (3.5.4+dfsg-1) unstable; urgency=medium . * New upstream version * d/watch: add +dfsg repack…

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Exploring Google’s Gemini For Function Calling | by Tarun Singh | Dec, 2023

Welcome to the cutting edge of artificial intelligence and coding! Today, we’re diving into Google’s latest marvel in the AI world — the Vertex AI Gemini API. This isn’t just another AI tool; it’s a game-changer, a glimpse into the future of how we interact with code and AI. Function…

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Vimerse InfoTech Inc hiring Sr. Software Engineer (Bioinformatics) in Mississauga, Ontario, Canada

Job Title: Sr. Software Engineer in Test (Bioinformatics or Data Sciences) Location: Mississauga, CAD Impact Healthcare Roche Sequencing is not only changing science, but we are changing lives. Our software teams are laying the groundwork for the future by developing powerful bioinformatics algorithms, data analysis tools, and software/systems infrastructures so…

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Sorting atoms based on their Atom ids – LAMMPS Development

I am writing a custom potential for a molecule so I want to sort all the atoms in amolecule according to their Atom ids .Any idea how that can be done ? Do you mean you already have the LAMMPS data file and you want to sort the atoms of…

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Solved Note: This is the whole question. For Exercise 6 & 7

Note: This is the whole question. For Exercise 6 & 7 & 8 it’s asking for a mermaid code through RStudio/Posit Cloud that generates a flowchart. Additionally, Exercise 6 & 7 & 8 is also asking for a python code that answers the questions. Also if it’s not too much…

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Google Announced Gemini, And Imagen 2 API For Developers

Google has recently announced the Gemini AI, along with Imagen 2 and Duet AU for developers. These can be used to develop tools and integrate them into their products and services. All of these are available with Gemini, Imagen 2, and Duet AI on Vertex AI (Google Cloud API solution…

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132releng-armv7-default][misc/py-pytorch] Failed for py39-pytorch-2.1.1_1 in configure

You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/ampere3/data/132releng-armv7-default/1dd4264fe4a8/logs/py39-pytorch-2.1.1_1.log Build URL: pkg-status.freebsd.org/ampere3/build.html?mastername=132releng-armv7-default&build=1dd4264fe4a8 Log: =>> Building misc/py-pytorch build started at Tue Dec 19…

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Senior Bioinformatics Scientist in Chicago, IL for University of Chicago (UC)

Details Posted: 19-Dec-23 Location: Chicago, Illinois Type: Full-time Salary: Open Categories: Research – Laboratory/Non-Laboratory Staff/Administrative Location: Chicago, IL Job Description: Development of an integrated data warehouse for symbiote including clinical, microbiome sequence, and metabolomic data.  Management of DFI Biobank, MMF, and HMMF data within the Symbiote platform. Functional analysis of…

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KeyInfo hiring SDET must have (Bioinformatics or Data Sciences) in Canada

Job Title: Sr. Software Engineer in Test (Bioinformatics or Data Sciences) Remote Description: Responsibilities: •         Implement and maintain an end-to-end automation test framework for running UI integration tests and quality dashboards using various tools: Java, JavaScript/TypeScript, Cypress, Selenium WebDriver, Cucumber, TestNG, Junit •         Design and develop requirements based test cases •         Implement automated…

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Bioinformatics Scientist, San Jose, California

Our company is a Silicon Valley based biotech startup focusing on non-invasive diagnostics (liquid biopsy) to facilitate early detection of cancer. We are developing systems that will provide the most sensitive, accurate, and robust NGS-based ctDNA mutation detection. We are looking for a highly motivated Scientist to join our Bioinformatics…

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python – Processing S4 object of data class .MultipleRasterData in RStudio

I downloaded Era5 single level data using Python, where I tried to calculate daily_means from hourly data prior to downloading. I read the returned NetCDF-file into RStudio using nc_file <- “path/download.nc” raster_data <- raster::brick(nc_file) This results in a LargeRasterBrick (with more than 5 million elements) of type S4. From here…

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Bioinformatics Engineer, Translational Genetics, San Diego, California

About UsEmpirico is a venture-backed, next-generation therapeutics company founded on utilizing huge biological datasets, human genetics and programmable biology to power novel target discovery and development. Empirico’s Precision Insights Platform was purpose-built for therapeutic discovery and leverages a world-leading dataset and advanced algorithmic approaches to identify and prioritize therapeutic targets…

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Master Image Segmentation with PyTorch U-NET

Master Image Segmentation with PyTorch U-NET Introduction Building the Model Preprocessing the Data Loading the Data Training the Model Evaluating Model Performance Saving and Loading the Model Visualizing Predictions Conclusion Frequently Asked Questions In this article, we will learn how to perform image segmentation in PyTorch. We will start by…

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How to Use Google’s Gemini API for Your Projects (Beginner’s Guide)

Embarking on the journey of integrating artificial intelligence into your projects can be both exciting and daunting. Google’s Gemini API stands as a beacon of innovation, offering a plethora of possibilities to enhance and streamline various aspects of your projects.  Whether you’re a seasoned developer or a beginner in the…

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Senior Scientist/Principal Scientist, Bioinformatics and Data Science, Cambridge, Massachusetts

Position Summary: Stealth NewCo is a discovery-stage biotechnology company leveraging insights in RNA biology to discover and develop new therapeutics for indications across multiple disease areas including oncology and neuromuscular disorders. We are seeking a talented Bioinformatics and Data Science Senior/Principal Scientist with experience analyzing multidimensional chemical, biological, and sequencing…

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Senior Bioinformatics Scientist @ University of Chicago

Department BSD DFI – Translational Informatics About the Department The Duchossois Family Institute focuses on the role of commensal bacteria in enhancing disease resistance and is using genomic and metabolomic platforms to characterize the microbiome and its metabolites. Computational and bioinformatic expertise is required to understand how commensal bacteria impact…

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‘Resources’ object has no attribute ‘tmpdir’

Snakemake error AttributeError: ‘Resources’ object has no attribute ‘tmpdir’ 0 I have built a Snakemake pipeline which has been designed for paired-end reads. I have made a trial with single-end reads, and got this error. I am not sure it is related to the change of reads design, and to…

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Kaggle Python Certification For Free in Just 1 Day

What is Kaggle Kaggle is a platform where machine learning and data science enthusiasts share their knowledge through data sets and free resources. Kaggle is very helpful for Computer science and Engineering Students and IT Professionals to develop projects in various fields such as Machine Learning, Data Science, Artificial intelligence,…

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Mapmygenome Jobs For Bioinformatics – Analyst Vacancy

–Must See– Mapmygenome Jobs For Bioinformatics – Analyst Vacancy Hot Job Opportunity: Bioinformatics Analyst at Mapmygenome™! Mapmygenome™ is a leading genomics company based in Hyderabad. We specialize in providing personalized healthcare solutions based on an individual’s genetic makeup. Our mission is to empower individuals to make informed choices about their…

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First steps in version control with GitHub

Description Convenor: Alexia Cardona (CDH RSE Methods Fellow) Please note this workshop has limited spaces and an application process in place. Application forms should be completed by noon, Friday 16 February 2024. Successful applicants will be notified by the end-of-day Wednesday 21 February 2024. Version control helps you to write…

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CNN: building blocks with PyTorch

In this article we provide an overview on the Convolutional Neural Networks (CNNs) main building features and how to implement them in PyTorch. This article was written together with chiara giovagnoli Image taken from Unsplash A Convolutional Neural Network (CNN) is a type of deep learning algorithm designed for processing…

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python – Get final values from an specific dimension/axis of an arbitrarily dimensioned PyTorch Tensor

You can use index_select: torch.index_select(x, dim=dim, index=torch.tensor(x.size(dim) – 1)) The output tensor would contain the same number of dimensions as the input. You can use squeeze on the dim to get rid of the extra dimension: torch.index_select(x, dim=dim, index=torch.tensor(x.size(dim) – 1)).squeeze(dim=dim) Note: While select returns a view of the input…

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Exploring Popular Machine Learning Models in Python | by Jawaria Irfan Thakur | Dec, 2023

Machine learning models are at the heart of data-driven solutions, enabling computers to learn patterns from data and make predictions or decisions. Python, with its rich ecosystem of libraries, offers a diverse range of machine learning models. Let’s delve into some popular ones: Linear RegressionLinear regression is a fundamental supervised…

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Sage for Undergraduates – Free Computer, Programming, Mathematics, Technical Books, Lecture Notes and Tutorials

Book Description As the open-source and free competitor to expensive software like Maple™, Mathematica&reg, Magma, and MATLAB(R), Sage offers anyone with access to a web browser the ability to use cutting-edge mathematical software and display his or her results for others, often with stunning graphics. This book is a gentle…

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